Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01617

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
1,780,596	-		MIT1002_01616	0.39	+0.2
1,780,605	-		MIT1002_01616	0.40	+0.2
1,780,644	+		MIT1002_01616	0.43	-0.2
1,780,672	-		MIT1002_01616	0.45	-0.4
1,780,770	+		MIT1002_01616	0.52	+0.2
1,780,823	-		MIT1002_01616	0.55	+0.3
1,780,877	+		MIT1002_01616	0.59	-0.3
1,780,877	+		MIT1002_01616	0.59	+0.3
1,780,903	+		MIT1002_01616	0.61	-0.2
1,780,905	-		MIT1002_01616	0.61	-0.5
1,780,907	+		MIT1002_01616	0.61	-0.5
1,780,909	+		MIT1002_01616	0.62	+0.5
1,780,909	+		MIT1002_01616	0.62	+0.1
1,780,912	-		MIT1002_01616	0.62	-0.1
1,780,937	+		MIT1002_01616	0.64	-0.9
1,780,975	+		MIT1002_01616	0.66	-0.6
1,780,975	+		MIT1002_01616	0.66	+0.6
1,780,975	+		MIT1002_01616	0.66	+0.5
1,780,975	+		MIT1002_01616	0.66	-0.3
1,780,983	-		MIT1002_01616	0.67	-0.2
1,780,983	-		MIT1002_01616	0.67	-0.2
1,780,983	-		MIT1002_01616	0.67	+0.1
1,780,990	-		MIT1002_01616	0.67	+1.2
1,781,014	+		MIT1002_01616	0.69	-0.2
1,781,014	+		MIT1002_01616	0.69	-0.0
1,781,022	-		MIT1002_01616	0.70	+1.7
1,781,070	-		MIT1002_01616	0.73	+0.3
1,781,072	+		MIT1002_01616	0.73	-0.7
1,781,072	+		MIT1002_01616	0.73	+1.2
1,781,072	+		MIT1002_01616	0.73	+0.9
1,781,150	-		MIT1002_01616	0.79	-0.2
1,781,161	+		MIT1002_01616	0.80	-0.2
1,781,185	+		MIT1002_01616	0.81	+0.2
1,781,192	+		MIT1002_01616	0.82	-0.1
1,781,192	+		MIT1002_01616	0.82	-0.2
1,781,193	-		MIT1002_01616	0.82	-0.4
1,781,200	-		MIT1002_01616	0.82	-1.9
1,781,200	-		MIT1002_01616	0.82	-0.9
1,781,382	+				-1.6
1,781,382	+				-0.7
1,781,390	-				-1.5
1,781,538	+				-0.6
1,781,595	+		MIT1002_01617	0.18	-2.6
1,781,603	-		MIT1002_01617	0.19	+0.1
1,781,603	-		MIT1002_01617	0.19	-1.6
1,781,603	-		MIT1002_01617	0.19	+1.6
1,781,619	-		MIT1002_01617	0.22	-0.9
1,781,638	-		MIT1002_01617	0.25	-0.8
1,781,640	+		MIT1002_01617	0.26	+1.3
1,781,718	-		MIT1002_01617	0.39	+0.8
1,781,757	+		MIT1002_01617	0.46	-1.4
1,781,765	-		MIT1002_01617	0.48	-0.8
1,781,872	+		MIT1002_01617	0.66	+0.5
1,781,910	-		MIT1002_01617	0.73	-1.8
1,781,925	-		MIT1002_01617	0.76	+0.2
1,781,952	+		MIT1002_01617	0.80	-0.5
1,782,027	-				-1.0
1,782,065	+				+0.2
1,782,072	-				+0.5
1,782,154	-				+0.4
1,782,196	+				-0.4
1,782,197	+				+0.7
1,782,204	-				+0.5
1,782,221	-				-0.2
1,782,245	+				+0.6
1,782,329	-				+1.2
1,782,420	-		MIT1002_01618	0.12	-0.2
1,782,458	-		MIT1002_01618	0.14	+0.0
1,782,739	+		MIT1002_01618	0.29	+0.7
1,782,757	+		MIT1002_01618	0.30	-0.6
1,782,758	+		MIT1002_01618	0.30	-0.2
1,782,758	+		MIT1002_01618	0.30	-0.9
1,782,766	-		MIT1002_01618	0.30	+0.8
1,782,859	+		MIT1002_01618	0.35	-0.8
1,782,859	+		MIT1002_01618	0.35	-0.2
1,782,881	+		MIT1002_01618	0.36	+0.7
1,782,889	-		MIT1002_01618	0.36	-0.6
1,782,904	+		MIT1002_01618	0.37	+2.0
1,782,904	+		MIT1002_01618	0.37	+0.9
1,782,910	-		MIT1002_01618	0.38	+0.3
1,782,912	-		MIT1002_01618	0.38	+0.6
1,782,920	-		MIT1002_01618	0.38	+0.6
1,782,976	-		MIT1002_01618	0.41	-1.2
1,783,038	+		MIT1002_01618	0.44	+1.1
1,783,038	+		MIT1002_01618	0.44	-0.1
1,783,046	-		MIT1002_01618	0.45	-0.7
1,783,046	-		MIT1002_01618	0.45	-2.6