Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01447

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
1,591,916	-		MIT1002_01446	0.71	-0.6
1,591,941	+		MIT1002_01446	0.72	-0.9
1,591,966	+		MIT1002_01446	0.73	-0.3
1,592,000	+		MIT1002_01446	0.74	+0.2
1,592,009	-		MIT1002_01446	0.75	+0.8
1,592,015	+		MIT1002_01446	0.75	+0.6
1,592,023	-		MIT1002_01446	0.75	-0.3
1,592,026	+		MIT1002_01446	0.75	+0.3
1,592,041	+		MIT1002_01446	0.76	-0.6
1,592,044	-		MIT1002_01446	0.76	-1.0
1,592,049	+		MIT1002_01446	0.76	-0.2
1,592,056	+		MIT1002_01446	0.77	-0.0
1,592,066	+		MIT1002_01446	0.77	-0.3
1,592,074	-		MIT1002_01446	0.77	-0.0
1,592,090	+		MIT1002_01446	0.78	-1.5
1,592,113	+		MIT1002_01446	0.79	-0.3
1,592,150	+		MIT1002_01446	0.81	-0.0
1,592,150	+		MIT1002_01446	0.81	+1.3
1,592,164	-		MIT1002_01446	0.81	-0.0
1,592,308	+		MIT1002_01446	0.87	-1.3
1,592,318	+		MIT1002_01446	0.88	+0.1
1,592,318	+		MIT1002_01446	0.88	-1.6
1,592,333	-		MIT1002_01446	0.88	+0.6
1,592,365	+		MIT1002_01446	0.90	-0.3
1,592,366	+		MIT1002_01446	0.90	-0.1
1,592,429	+				+1.4
1,592,435	-				-0.8
1,592,437	-				-2.5
1,592,458	-				+0.3
1,592,518	+				+0.2
1,592,518	+				-0.2
1,592,518	+				+1.5
1,592,526	-				-0.1
1,592,526	-				-2.7
1,592,542	-				-0.4
1,592,624	+				+0.1
1,592,632	-				+1.2
1,592,634	+				+0.8
1,592,683	-				+1.1
1,592,745	-				+1.8
1,592,781	-				-0.0
1,592,781	-				-0.0
1,592,785	+				+1.2
1,592,847	+				+0.2
1,592,855	-				-1.0
1,592,897	+				+0.0
1,592,921	+				+0.1
1,592,923	-				-0.0
1,592,923	-				+0.5
1,592,924	-				+0.4
1,592,930	-				-1.1
1,592,943	+		MIT1002_01447	0.10	+0.4
1,592,943	+		MIT1002_01447	0.10	+1.8
1,592,966	-		MIT1002_01447	0.12	+0.7
1,592,967	-		MIT1002_01447	0.12	-0.1
1,592,975	+		MIT1002_01447	0.13	+1.6
1,592,993	+		MIT1002_01447	0.14	+0.2
1,593,034	-		MIT1002_01447	0.18	-0.3
1,593,047	+		MIT1002_01447	0.19	+0.6
1,593,047	+		MIT1002_01447	0.19	+2.1
1,593,052	+		MIT1002_01447	0.19	+0.2
1,593,055	-		MIT1002_01447	0.20	-0.7
1,593,062	+		MIT1002_01447	0.20	+0.8
1,593,070	-		MIT1002_01447	0.21	+0.8
1,593,070	-		MIT1002_01447	0.21	-1.5
1,593,103	+		MIT1002_01447	0.24	+0.1
1,593,231	+		MIT1002_01447	0.35	-0.4
1,593,239	-		MIT1002_01447	0.35	+0.1
1,593,262	-		MIT1002_01447	0.37	+0.4
1,593,316	+		MIT1002_01447	0.42	-0.2
1,593,335	+		MIT1002_01447	0.44	+1.0
1,593,343	-		MIT1002_01447	0.44	-0.1
1,593,421	+		MIT1002_01447	0.51	+0.1
1,593,427	-		MIT1002_01447	0.52	+1.0
1,593,429	-		MIT1002_01447	0.52	-1.2
1,593,429	-		MIT1002_01447	0.52	+0.6
1,593,479	-		MIT1002_01447	0.56	-0.1
1,593,494	+		MIT1002_01447	0.57	+0.3
1,593,494	+		MIT1002_01447	0.57	-0.8
1,593,511	+		MIT1002_01447	0.59	-0.0
1,593,622	-		MIT1002_01447	0.68	-0.3
1,593,668	-		MIT1002_01447	0.72	-0.0
1,593,730	-		MIT1002_01447	0.78	-0.1
1,593,739	-		MIT1002_01447	0.79	-0.6
1,593,754	+		MIT1002_01447	0.80	+0.3
1,593,754	-		MIT1002_01447	0.80	+0.0
1,593,828	-		MIT1002_01447	0.86	+0.9
1,593,831	+		MIT1002_01447	0.86	+0.3
1,593,839	-		MIT1002_01447	0.87	+0.3
1,593,887	-				+0.3
1,593,914	-				-0.5
1,594,093	-				-1.1
1,594,104	+				+1.0
1,594,104	+				+0.2
1,594,104	+				+0.2
1,594,128	-				+0.6
1,594,135	-				-1.0
1,594,135	-				+1.7
1,594,145	-				-0.8
1,594,308	+		MIT1002_01448	0.28	+0.8
1,594,323	+		MIT1002_01448	0.30	-0.6
1,594,383	+		MIT1002_01448	0.38	-1.9
1,594,419	+		MIT1002_01448	0.42	-0.2
1,594,427	-		MIT1002_01448	0.43	+0.4
1,594,511	+		MIT1002_01448	0.54	-0.1
1,594,560	-		MIT1002_01448	0.61	-0.1
1,594,597	+		MIT1002_01448	0.65	+0.3
1,594,618	-		MIT1002_01448	0.68	+0.4
1,594,629	-		MIT1002_01448	0.70	+1.5
1,594,681	+		MIT1002_01448	0.76	+1.2
1,594,689	-		MIT1002_01448	0.77	-1.1
1,594,777	-		MIT1002_01448	0.89	+0.1
1,594,830	-				+1.6
1,594,876	+				+1.0
1,594,897	+				+1.1
1,594,919	+				+1.3