Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01403

Experiment: monoculture; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01402 and MIT1002_01403 are separated by 85 nucleotidesMIT1002_01403 and MIT1002_01404 are separated by 93 nucleotidesMIT1002_01404 and MIT1002_01405 are separated by 157 nucleotidesMIT1002_01405 and MIT1002_01406 are separated by 157 nucleotidesMIT1002_01406 and MIT1002_01407 are separated by 157 nucleotides MIT1002_01402: MIT1002_01402 - Glutamate--tRNA ligase, at 1,550,936 to 1,552,345 _01402 MIT1002_01403: MIT1002_01403 - tRNA-Ala, at 1,552,431 to 1,552,506 _01403 MIT1002_01404: MIT1002_01404 - tRNA-Glu, at 1,552,600 to 1,552,675 _01404 MIT1002_01405: MIT1002_01405 - tRNA-Glu, at 1,552,833 to 1,552,908 _01405 MIT1002_01406: MIT1002_01406 - tRNA-Glu, at 1,553,066 to 1,553,141 _01406 MIT1002_01407: MIT1002_01407 - tRNA-Glu, at 1,553,299 to 1,553,374 _01407 Position (kb) 1552 1553Strain fitness (log2 ratio) -2 -1 0 1at 1552.440 kb on + strand, within MIT1002_01403at 1553.220 kb on + strandat 1553.220 kb on + strandat 1553.220 kb on + strandat 1553.220 kb on + strandat 1553.220 kb on + strandat 1553.228 kb on - strandat 1553.228 kb on - strandat 1553.228 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
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1,552,440 + MIT1002_01403 0.12 -1.8
1,553,220 + +0.5
1,553,220 + -0.4
1,553,220 + -0.2
1,553,220 + +0.6
1,553,220 + -0.7
1,553,228 - +0.8
1,553,228 - +1.3
1,553,228 - -0.4

Or see this region's nucleotide sequence