Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01328

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
1,473,661	-		MIT1002_01326	0.80	-0.4
1,473,681	+		MIT1002_01326	0.81	+1.0
1,473,694	-		MIT1002_01326	0.82	-0.7
1,473,698	+		MIT1002_01326	0.83	+0.9
1,473,722	+		MIT1002_01326	0.84	-1.2
1,473,730	-		MIT1002_01326	0.85	+0.1
1,473,730	-		MIT1002_01326	0.85	+0.2
1,473,730	-		MIT1002_01326	0.85	+1.1
1,473,735	+		MIT1002_01326	0.85	-0.7
1,473,743	-		MIT1002_01326	0.86	-0.1
1,473,767	+		MIT1002_01326	0.88	+2.2
1,473,770	+		MIT1002_01326	0.88	-0.7
1,473,777	+		MIT1002_01326	0.89	+0.6
1,473,785	-		MIT1002_01326	0.89	+1.3
1,473,785	-		MIT1002_01326	0.89	-1.0
1,473,856	-				-1.0
1,473,877	+				+0.3
1,473,882	+				-0.8
1,473,940	+				-0.0
1,473,948	-				-0.2
1,474,011	-				-0.7
1,474,016	-				-1.0
1,474,029	-				-0.4
1,474,109	-		MIT1002_01327	0.19	+0.3
1,474,158	-		MIT1002_01327	0.29	+0.6
1,474,163	+		MIT1002_01327	0.30	+0.7
1,474,171	-		MIT1002_01327	0.32	+0.4
1,474,171	-		MIT1002_01327	0.32	-0.0
1,474,174	+		MIT1002_01327	0.32	+0.1
1,474,198	+		MIT1002_01327	0.37	-0.3
1,474,316	+		MIT1002_01327	0.62	+0.4
1,474,316	+		MIT1002_01327	0.62	-0.6
1,474,318	+		MIT1002_01327	0.62	+1.2
1,474,336	-		MIT1002_01327	0.66	+0.2
1,474,405	+		MIT1002_01327	0.80	-0.4
1,474,413	-		MIT1002_01327	0.81	-0.2
1,474,507	-				-0.3
1,474,520	+				+0.2
1,474,639	+				-0.2
1,474,647	-				-0.2
1,474,647	-				+0.1
1,474,689	+				-2.4
1,474,691	+				+0.3
1,474,697	-				-0.6
1,474,730	-		MIT1002_01328	0.12	+1.0
1,474,939	-		MIT1002_01328	0.37	-0.4
1,474,946	+		MIT1002_01328	0.37	-0.2
1,474,986	+		MIT1002_01328	0.42	+0.2
1,475,096	-		MIT1002_01328	0.55	-1.3
1,475,109	-		MIT1002_01328	0.57	-3.2
1,475,198	-		MIT1002_01328	0.67	-2.2
1,475,234	-		MIT1002_01328	0.71	-0.2
1,475,241	+		MIT1002_01328	0.72	+1.4
1,475,249	-		MIT1002_01328	0.73	+0.0
1,475,254	-		MIT1002_01328	0.74	+0.6
1,475,271	+		MIT1002_01328	0.76	+0.1
1,475,377	+		MIT1002_01328	0.88	-0.6
1,475,387	+		MIT1002_01328	0.89	-0.5
1,475,387	+		MIT1002_01328	0.89	-1.2
1,475,395	-				-0.4
1,475,397	+				-0.2
1,475,405	-				-0.1
1,475,405	-				-0.4
1,475,459	-				+1.0