Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01233

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
1,356,492	+		MIT1002_01232	0.32	-0.5
1,356,492	+		MIT1002_01232	0.32	-0.4
1,356,500	-		MIT1002_01232	0.33	+1.0
1,356,584	-		MIT1002_01232	0.39	-1.4
1,356,615	+		MIT1002_01232	0.42	+1.0
1,356,615	+		MIT1002_01232	0.42	+0.1
1,356,759	-		MIT1002_01232	0.53	+2.2
1,356,769	+		MIT1002_01232	0.54	-1.2
1,356,852	+		MIT1002_01232	0.60	-0.2
1,356,860	-		MIT1002_01232	0.61	-1.5
1,356,860	-		MIT1002_01232	0.61	-0.3
1,356,860	-		MIT1002_01232	0.61	+0.8
1,356,860	-		MIT1002_01232	0.61	-0.8
1,356,900	+		MIT1002_01232	0.64	-0.2
1,356,908	-		MIT1002_01232	0.64	+0.8
1,356,908	-		MIT1002_01232	0.64	+0.6
1,356,908	-		MIT1002_01232	0.64	+0.2
1,357,059	+		MIT1002_01232	0.76	-0.2
1,357,067	-		MIT1002_01232	0.77	-0.1
1,357,119	+		MIT1002_01232	0.81	+0.2
1,357,243	+				+0.6
1,357,251	-				+0.4
1,357,291	-				+0.7
1,357,323	-				-0.4
1,357,328	-				+1.3
1,357,335	+				+0.9
1,357,343	-				+0.4
1,357,343	-				+0.1
1,357,368	+				-0.9
1,357,371	-				-0.2
1,357,371	-				+1.3
1,357,392	+				-0.7
1,357,426	+				-0.3
1,357,426	+				-0.5
1,357,563	+				+0.8
1,357,571	-				-0.9
1,357,668	-		MIT1002_01233	0.11	-0.7
1,357,781	+		MIT1002_01233	0.17	-0.5
1,357,804	-		MIT1002_01233	0.18	-0.0
1,357,807	-		MIT1002_01233	0.19	+0.1
1,357,860	+		MIT1002_01233	0.21	+0.1
1,357,898	+		MIT1002_01233	0.23	+1.0
1,357,949	-		MIT1002_01233	0.26	+0.0
1,357,986	-		MIT1002_01233	0.28	-0.4
1,358,016	-		MIT1002_01233	0.29	-0.6
1,358,210	-		MIT1002_01233	0.40	+0.1
1,358,289	+		MIT1002_01233	0.44	-0.7
1,358,294	+		MIT1002_01233	0.44	-0.5
1,358,320	-		MIT1002_01233	0.45	-0.9
1,358,337	-		MIT1002_01233	0.46	-0.9
1,358,390	-		MIT1002_01233	0.49	+0.1
1,358,390	-		MIT1002_01233	0.49	-1.1
1,358,390	-		MIT1002_01233	0.49	-0.6
1,358,392	+		MIT1002_01233	0.49	+0.5
1,358,408	+		MIT1002_01233	0.50	-0.7
1,358,471	-		MIT1002_01233	0.53	+0.7
1,358,487	+		MIT1002_01233	0.54	+1.4
1,358,487	+		MIT1002_01233	0.54	+0.0
1,358,487	+		MIT1002_01233	0.54	-3.0
1,358,487	+		MIT1002_01233	0.54	+0.3
1,358,487	+		MIT1002_01233	0.54	+0.3
1,358,487	+		MIT1002_01233	0.54	-1.6
1,358,494	-		MIT1002_01233	0.54	+2.8
1,358,495	-		MIT1002_01233	0.54	+1.1
1,358,495	-		MIT1002_01233	0.54	+0.5
1,358,516	-		MIT1002_01233	0.55	+0.6
1,358,518	+		MIT1002_01233	0.56	-0.0
1,358,528	+		MIT1002_01233	0.56	-1.5
1,358,528	-		MIT1002_01233	0.56	-0.7
1,358,542	-		MIT1002_01233	0.57	-0.8
1,358,547	-		MIT1002_01233	0.57	+0.5
1,358,593	-		MIT1002_01233	0.59	-0.7
1,358,632	-		MIT1002_01233	0.61	-0.2
1,358,759	+		MIT1002_01233	0.68	-0.9
1,358,765	+		MIT1002_01233	0.68	-0.4
1,358,791	-		MIT1002_01233	0.70	+0.4
1,358,798	+		MIT1002_01233	0.70	+0.4
1,358,798	+		MIT1002_01233	0.70	-0.2
1,358,798	+		MIT1002_01233	0.70	-0.7
1,358,798	+		MIT1002_01233	0.70	+0.5
1,358,798	+		MIT1002_01233	0.70	+0.4
1,358,798	+		MIT1002_01233	0.70	+0.6
1,358,806	-		MIT1002_01233	0.71	+0.9
1,358,806	-		MIT1002_01233	0.71	-0.0
1,358,806	-		MIT1002_01233	0.71	+0.3
1,358,808	+		MIT1002_01233	0.71	-1.5
1,358,808	+		MIT1002_01233	0.71	-0.5
1,358,816	-		MIT1002_01233	0.71	+1.1
1,358,816	-		MIT1002_01233	0.71	+0.7
1,358,816	-		MIT1002_01233	0.71	-0.3
1,358,895	-		MIT1002_01233	0.75	-0.1
1,358,895	-		MIT1002_01233	0.75	+0.2
1,358,947	+		MIT1002_01233	0.78	-0.7
1,358,981	+		MIT1002_01233	0.80	+0.2
1,359,036	+		MIT1002_01233	0.82	-0.6
1,359,044	-		MIT1002_01233	0.83	+1.6
1,359,044	-		MIT1002_01233	0.83	+1.8
1,359,072	+		MIT1002_01233	0.84	-0.3
1,359,114	+		MIT1002_01233	0.87	+1.0
1,359,122	-		MIT1002_01233	0.87	+0.0
1,359,231	+				-1.4
1,359,306	+				+0.4
1,359,511	+				-0.1
1,359,574	+				-0.3
1,359,574	-				-0.1
1,359,584	-				+0.3
1,359,584	-				-0.4
1,359,608	-				+1.3
1,360,284	-				-0.9
1,360,296	-				-1.6