Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_01164 and MIT1002_01165 are separated by 1 nucleotides MIT1002_01165 and MIT1002_01166 are separated by 11 nucleotides MIT1002_01166 and MIT1002_01167 are separated by 1 nucleotides MIT1002_01167 and MIT1002_01168 are separated by 2 nucleotides
MIT1002_01164: MIT1002_01164 - colicin uptake protein TolQ, at 1,280,230 to 1,281,588
_01164
MIT1002_01165: MIT1002_01165 - biopolymer transport protein ExbB, at 1,281,590 to 1,282,114
_01165
MIT1002_01166: MIT1002_01166 - biopolymer transport protein ExbD, at 1,282,126 to 1,282,524
_01166
MIT1002_01167: MIT1002_01167 - transport protein TonB, at 1,282,526 to 1,283,137
_01167
MIT1002_01168: MIT1002_01168 - Flp pilus assembly protein TadD, contains TPR repeats, at 1,283,140 to 1,284,405
_01168
Position (kb) 1282
1283 Strain fitness (log2 ratio) -1
0
1
2 at 1281.301 kb on - strand, within MIT1002_01164 at 1281.342 kb on + strand, within MIT1002_01164 at 1281.939 kb on + strand, within MIT1002_01165 at 1282.484 kb on - strand, within MIT1002_01166 at 1282.726 kb on - strand, within MIT1002_01167 at 1282.848 kb on + strand, within MIT1002_01167 at 1283.215 kb on + strand at 1283.391 kb on + strand, within MIT1002_01168 at 1283.437 kb on + strand, within MIT1002_01168 at 1283.516 kb on - strand, within MIT1002_01168
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 1,281,301 - MIT1002_01164 0.79 -0.9 1,281,342 + MIT1002_01164 0.82 -1.1 1,281,939 + MIT1002_01165 0.66 -0.3 1,282,484 - MIT1002_01166 0.90 +0.6 1,282,726 - MIT1002_01167 0.33 -0.1 1,282,848 + MIT1002_01167 0.53 -0.8 1,283,215 + -0.7 1,283,391 + MIT1002_01168 0.20 +0.5 1,283,437 + MIT1002_01168 0.23 +2.7 1,283,516 - MIT1002_01168 0.30 +1.1
Or see this region's nucleotide sequence