Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01042

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
1,150,579	-		MIT1002_01040	0.39	+0.6
1,150,595	+		MIT1002_01040	0.42	+0.6
1,150,611	-		MIT1002_01040	0.46	+1.2
1,150,644	-		MIT1002_01040	0.54	-1.1
1,150,658	+		MIT1002_01040	0.57	-0.7
1,150,728	-		MIT1002_01040	0.74	-0.3
1,150,789	+		MIT1002_01040	0.88	+0.1
1,150,789	+		MIT1002_01040	0.88	-0.2
1,150,833	-				+0.3
1,150,858	+				+0.8
1,150,860	+				-1.1
1,150,860	+				+0.9
1,150,868	-				+0.5
1,150,881	+				+1.2
1,150,893	+				+0.1
1,150,911	-				+0.6
1,150,916	-				+3.0
1,151,015	-		MIT1002_01041	0.21	+1.6
1,151,040	-		MIT1002_01041	0.25	-0.4
1,151,052	-		MIT1002_01041	0.26	+0.6
1,151,083	-		MIT1002_01041	0.31	-1.2
1,151,121	-		MIT1002_01041	0.37	+0.2
1,151,121	-		MIT1002_01041	0.37	+3.0
1,151,121	-		MIT1002_01041	0.37	-0.7
1,151,121	-		MIT1002_01041	0.37	+0.3
1,151,266	+		MIT1002_01041	0.58	+1.0
1,151,369	+		MIT1002_01041	0.73	-0.0
1,151,370	+		MIT1002_01041	0.73	-0.0
1,151,381	+		MIT1002_01041	0.74	-0.9
1,151,519	+				-0.9
1,151,527	-				-0.1
1,151,547	-				-0.9
1,151,581	+				-2.3
1,151,648	+				+0.7
1,151,648	+				+2.1
1,151,711	+		MIT1002_01042	0.10	+1.0
1,151,793	-		MIT1002_01042	0.16	+0.1
1,151,845	-		MIT1002_01042	0.20	+1.3
1,151,887	-		MIT1002_01042	0.23	-2.7
1,151,894	+		MIT1002_01042	0.23	-0.2
1,151,897	-		MIT1002_01042	0.24	-1.2
1,151,950	-		MIT1002_01042	0.27	+0.7
1,152,003	-		MIT1002_01042	0.31	-0.3
1,152,003	-		MIT1002_01042	0.31	+0.5
1,152,046	+		MIT1002_01042	0.34	+0.2
1,152,115	+		MIT1002_01042	0.39	-1.4
1,152,183	+		MIT1002_01042	0.44	-0.6
1,152,191	+		MIT1002_01042	0.45	-0.3
1,152,302	+		MIT1002_01042	0.53	-0.3
1,152,310	-		MIT1002_01042	0.53	+0.9
1,152,339	+		MIT1002_01042	0.55	-0.3
1,152,386	-		MIT1002_01042	0.59	+0.0
1,152,483	-		MIT1002_01042	0.66	+0.6
1,152,726	+		MIT1002_01042	0.83	+1.2
1,152,731	+		MIT1002_01042	0.84	+0.0
1,152,739	-		MIT1002_01042	0.84	+0.0
1,152,739	-		MIT1002_01042	0.84	-0.6
1,152,739	-		MIT1002_01042	0.84	-0.1
1,152,739	-		MIT1002_01042	0.84	-1.2
1,152,744	-		MIT1002_01042	0.85	+1.4
1,152,845	+				+1.2
1,152,853	-				+0.3
1,152,858	-				+0.0
1,152,915	-				+0.3
1,152,925	+				+0.6
1,152,947	-				+2.2
1,153,047	-				-0.4
1,153,135	-				+0.9
1,153,217	+		MIT1002_01043	0.19	+1.3
1,153,308	-		MIT1002_01043	0.30	-0.4
1,153,313	-		MIT1002_01043	0.30	+0.2
1,153,356	-		MIT1002_01043	0.35	-0.3
1,153,393	+		MIT1002_01043	0.39	-1.1
1,153,791	-		MIT1002_01043	0.85	+0.7
1,153,939	+				-0.3