Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01017

Experiment: monoculture; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01016 and MIT1002_01017 overlap by 8 nucleotidesMIT1002_01017 and MIT1002_01018 are separated by 4 nucleotides MIT1002_01016: MIT1002_01016 - Lipid-A-disaccharide synthase, at 1,123,536 to 1,124,684 _01016 MIT1002_01017: MIT1002_01017 - Ribonuclease HII, at 1,124,677 to 1,125,249 _01017 MIT1002_01018: MIT1002_01018 - DNA polymerase III subunit alpha, at 1,125,254 to 1,128,718 _01018 Position (kb) 1124 1125 1126Strain fitness (log2 ratio) -2 -1 0 1 2at 1124.015 kb on - strand, within MIT1002_01016at 1124.704 kb on + strandat 1124.721 kb on + strandat 1124.784 kb on + strand, within MIT1002_01017at 1124.853 kb on + strand, within MIT1002_01017at 1124.895 kb on + strand, within MIT1002_01017at 1124.920 kb on - strand, within MIT1002_01017at 1124.922 kb on - strand, within MIT1002_01017at 1124.938 kb on + strand, within MIT1002_01017at 1125.021 kb on + strand, within MIT1002_01017at 1125.076 kb on + strand, within MIT1002_01017at 1125.119 kb on - strand, within MIT1002_01017at 1125.144 kb on + strand, within MIT1002_01017at 1125.165 kb on + strand, within MIT1002_01017at 1125.229 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
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1,124,015 - MIT1002_01016 0.42 -2.3
1,124,704 + -0.8
1,124,721 + -1.8
1,124,784 + MIT1002_01017 0.19 -0.1
1,124,853 + MIT1002_01017 0.31 +0.4
1,124,895 + MIT1002_01017 0.38 +0.7
1,124,920 - MIT1002_01017 0.42 -0.2
1,124,922 - MIT1002_01017 0.43 -1.4
1,124,938 + MIT1002_01017 0.46 +1.9
1,125,021 + MIT1002_01017 0.60 -0.6
1,125,076 + MIT1002_01017 0.70 +0.3
1,125,119 - MIT1002_01017 0.77 +0.9
1,125,144 + MIT1002_01017 0.82 -1.1
1,125,165 + MIT1002_01017 0.85 -1.0
1,125,229 + -0.5

Or see this region's nucleotide sequence