Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01006

Experiment: monoculture; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01005 and MIT1002_01006 are separated by 237 nucleotidesMIT1002_01006 and MIT1002_01007 are separated by 23 nucleotidesMIT1002_01007 and MIT1002_01008 are separated by 9 nucleotides MIT1002_01005: MIT1002_01005 - Elongation factor Ts, at 1,112,333 to 1,113,205 _01005 MIT1002_01006: MIT1002_01006 - Uridylate kinase, at 1,113,443 to 1,114,180 _01006 MIT1002_01007: MIT1002_01007 - Ribosome-releasing factor, at 1,114,204 to 1,114,761 _01007 MIT1002_01008: MIT1002_01008 - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific), at 1,114,771 to 1,115,553 _01008 Position (kb) 1113 1114 1115Strain fitness (log2 ratio) -1 0 1 2at 1113.256 kb on + strandat 1113.256 kb on + strandat 1113.259 kb on + strandat 1113.280 kb on + strandat 1113.288 kb on + strandat 1113.288 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
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1,113,256 + -0.0
1,113,256 + +0.3
1,113,259 + -0.7
1,113,280 + +2.1
1,113,288 + -1.5
1,113,288 + +0.3

Or see this region's nucleotide sequence