Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00957

Experiment: monoculture; Experiment A, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment A, time point 1
1,062,380	-				-0.0
1,062,455	+				-0.8
1,062,471	+				-0.4
1,062,497	+				+1.0
1,062,497	+				+0.2
1,062,497	+				-0.9
1,062,505	-				+0.9
1,062,505	-				-0.2
1,062,520	-				-1.2
1,062,568	-				-2.1
1,062,646	-		MIT1002_00956	0.14	-1.7
1,062,670	+		MIT1002_00956	0.17	+0.1
1,062,678	-		MIT1002_00956	0.18	+0.8
1,062,687	+		MIT1002_00956	0.19	-0.1
1,062,729	+		MIT1002_00956	0.24	-1.7
1,062,737	-		MIT1002_00956	0.25	-1.9
1,062,737	-		MIT1002_00956	0.25	-2.5
1,062,749	-		MIT1002_00956	0.26	-1.4
1,062,803	-		MIT1002_00956	0.33	+0.5
1,062,803	-		MIT1002_00956	0.33	+0.9
1,062,841	-		MIT1002_00956	0.38	-0.4
1,062,889	+		MIT1002_00956	0.43	+1.1
1,062,899	-		MIT1002_00956	0.45	-0.4
1,063,028	+		MIT1002_00956	0.60	+0.4
1,063,030	+		MIT1002_00956	0.61	+0.2
1,063,030	+		MIT1002_00956	0.61	+0.1
1,063,030	+		MIT1002_00956	0.61	-0.7
1,063,030	+		MIT1002_00956	0.61	+0.2
1,063,030	+		MIT1002_00956	0.61	+2.5
1,063,030	+		MIT1002_00956	0.61	-0.2
1,063,030	+		MIT1002_00956	0.61	-0.1
1,063,030	+		MIT1002_00956	0.61	+0.3
1,063,038	-		MIT1002_00956	0.62	+1.8
1,063,038	-		MIT1002_00956	0.62	-2.3
1,063,038	-		MIT1002_00956	0.62	-0.7
1,063,038	-		MIT1002_00956	0.62	+1.6
1,063,048	-		MIT1002_00956	0.63	-0.7
1,063,136	-		MIT1002_00956	0.73	-1.1
1,063,174	+		MIT1002_00956	0.78	+0.9
1,063,174	+		MIT1002_00956	0.78	+0.2
1,063,174	+		MIT1002_00956	0.78	-0.3
1,063,288	+				-1.4
1,063,293	-				+0.0
1,063,340	-				+0.3
1,063,471	+		MIT1002_00957	0.11	+0.6
1,063,511	+		MIT1002_00957	0.15	+0.2
1,063,517	+		MIT1002_00957	0.15	-0.0
1,063,517	+		MIT1002_00957	0.15	+0.2
1,063,550	-		MIT1002_00957	0.18	+0.6
1,063,567	-		MIT1002_00957	0.19	-0.7
1,063,599	+		MIT1002_00957	0.22	+0.3
1,063,599	+		MIT1002_00957	0.22	+0.2
1,063,599	+		MIT1002_00957	0.22	+0.2
1,063,607	-		MIT1002_00957	0.23	-1.4
1,063,684	+		MIT1002_00957	0.29	-1.7
1,063,684	+		MIT1002_00957	0.29	-0.2
1,063,689	+		MIT1002_00957	0.29	-0.0
1,063,689	+		MIT1002_00957	0.29	+0.4
1,063,692	-		MIT1002_00957	0.30	+0.6
1,063,713	-		MIT1002_00957	0.31	+0.4
1,063,720	+		MIT1002_00957	0.32	+0.6
1,063,803	-		MIT1002_00957	0.39	-0.0
1,063,803	-		MIT1002_00957	0.39	+1.1
1,063,803	-		MIT1002_00957	0.39	+1.2
1,063,883	+		MIT1002_00957	0.46	+1.1
1,063,889	+		MIT1002_00957	0.46	-0.6
1,063,965	+		MIT1002_00957	0.52	+1.6
1,063,979	+		MIT1002_00957	0.54	+0.6
1,063,990	+		MIT1002_00957	0.55	+0.1
1,064,030	-		MIT1002_00957	0.58	+0.3
1,064,030	-		MIT1002_00957	0.58	+1.5
1,064,111	+		MIT1002_00957	0.65	+0.6
1,064,163	-		MIT1002_00957	0.69	+0.2
1,064,174	+		MIT1002_00957	0.70	+0.0
1,064,180	-		MIT1002_00957	0.70	-1.2
1,064,232	+		MIT1002_00957	0.75	+0.5
1,064,265	+		MIT1002_00957	0.78	-0.1
1,064,283	+		MIT1002_00957	0.79	+0.8
1,064,340	+		MIT1002_00957	0.84	-0.5
1,064,343	+		MIT1002_00957	0.84	+0.2
1,064,343	+		MIT1002_00957	0.84	-0.1
1,064,343	+		MIT1002_00957	0.84	+1.4
1,064,351	-		MIT1002_00957	0.85	-1.2
1,064,351	-		MIT1002_00957	0.85	+0.7
1,064,351	-		MIT1002_00957	0.85	+0.3
1,064,365	+		MIT1002_00957	0.86	+0.1
1,064,373	-		MIT1002_00957	0.87	-0.6
1,064,407	-		MIT1002_00957	0.89	-0.9
1,064,410	+		MIT1002_00957	0.90	+0.4
1,064,410	+		MIT1002_00957	0.90	+0.5
1,064,418	-				-1.2
1,064,418	-				-0.1
1,064,418	-				-0.2
1,064,438	-				-0.0
1,064,438	-				-1.1
1,064,438	-				-1.0
1,064,579	+				+0.2
1,064,651	-				+1.8
1,064,675	+				-0.1
1,064,682	+				-0.7
1,064,735	+		MIT1002_00958	0.20	-0.2
1,064,748	-		MIT1002_00958	0.25	-1.5
1,064,797	+		MIT1002_00958	0.40	+0.9
1,064,945	+		MIT1002_00958	0.86	-1.0
1,065,017	+				+0.6
1,065,034	+				-0.5
1,065,034	+				+0.1
1,065,034	+				+0.0
1,065,034	+				+0.6
1,065,042	-				+0.4
1,065,042	-				-0.9
1,065,057	-				+1.0
1,065,119	+				+0.8
1,065,125	+				-0.7
1,065,127	-				+0.6
1,065,140	+				-0.0
1,065,171	-				-0.8
1,065,228	+				-0.0
1,065,236	-				-0.2
1,065,290	+		MIT1002_00959	0.12	+0.5
1,065,328	-		MIT1002_00959	0.13	-0.3
1,065,340	-		MIT1002_00959	0.14	-0.8
1,065,438	+		MIT1002_00959	0.18	+1.9
1,065,468	-		MIT1002_00959	0.19	+1.7
1,065,505	+		MIT1002_00959	0.20	+1.5