Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00863 and MIT1002_00864 are separated by 301 nucleotides MIT1002_00864 and MIT1002_00865 are separated by 222 nucleotides MIT1002_00865 and MIT1002_00866 are separated by 195 nucleotides
MIT1002_00863: MIT1002_00863 - Phosphoglycerate kinase, at 948,534 to 949,709
_00863
MIT1002_00864: MIT1002_00864 - Fructose-bisphosphate aldolase class 1, at 950,011 to 950,910
_00864
MIT1002_00865: MIT1002_00865 - hypothetical protein, at 951,133 to 951,447
_00865
MIT1002_00866: MIT1002_00866 - Toluene efflux pump periplasmic linker protein TtgA precursor, at 951,643 to 952,728
_00866
Position (kb) 950
951 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 949.744 kb on + strand at 949.759 kb on + strand at 949.777 kb on + strand at 949.834 kb on + strand at 949.834 kb on + strand at 949.964 kb on + strand at 949.964 kb on + strand at 950.905 kb on + strand at 951.075 kb on - strand at 951.077 kb on + strand at 951.085 kb on - strand at 951.085 kb on - strand at 951.149 kb on + strand at 951.286 kb on - strand, within MIT1002_00865 at 951.410 kb on + strand, within MIT1002_00865 at 951.464 kb on - strand at 951.472 kb on - strand at 951.506 kb on - strand at 951.552 kb on + strand at 951.794 kb on + strand, within MIT1002_00866 at 951.806 kb on - strand, within MIT1002_00866 at 951.814 kb on - strand, within MIT1002_00866 at 951.845 kb on + strand, within MIT1002_00866 at 951.878 kb on + strand, within MIT1002_00866 at 951.878 kb on + strand, within MIT1002_00866 at 951.892 kb on + strand, within MIT1002_00866
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 949,744 + -0.2 949,759 + +0.9 949,777 + +0.5 949,834 + -2.8 949,834 + -1.7 949,964 + -3.9 949,964 + -1.2 950,905 + -1.3 951,075 - -0.1 951,077 + +0.0 951,085 - -0.5 951,085 - -0.1 951,149 + -0.9 951,286 - MIT1002_00865 0.49 +1.0 951,410 + MIT1002_00865 0.88 -1.5 951,464 - +1.0 951,472 - +0.8 951,506 - +1.6 951,552 + +0.1 951,794 + MIT1002_00866 0.14 +0.6 951,806 - MIT1002_00866 0.15 -1.8 951,814 - MIT1002_00866 0.16 -0.4 951,845 + MIT1002_00866 0.19 -0.1 951,878 + MIT1002_00866 0.22 +0.1 951,878 + MIT1002_00866 0.22 -1.5 951,892 + MIT1002_00866 0.23 +0.2
Or see this region's nucleotide sequence