Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00830 and MIT1002_00831 overlap by 4 nucleotides MIT1002_00831 and MIT1002_00832 are separated by 0 nucleotides MIT1002_00832 and MIT1002_00833 are separated by 2 nucleotides
MIT1002_00830: MIT1002_00830 - Lipopolysaccharide export system protein LptC, at 912,571 to 913,149
_00830
MIT1002_00831: MIT1002_00831 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC, at 913,146 to 913,694
_00831
MIT1002_00832: MIT1002_00832 - Arabinose 5-phosphate isomerase KdsD, at 913,695 to 914,675
_00832
MIT1002_00833: MIT1002_00833 - Inner membrane protein YrbG, at 914,678 to 915,634
_00833
Position (kb) 913
914
915 Strain fitness (log2 ratio) -2
-1
0
1 at 913.188 kb on - strand at 914.751 kb on - strand at 914.842 kb on + strand, within MIT1002_00833 at 914.844 kb on - strand, within MIT1002_00833 at 914.904 kb on - strand, within MIT1002_00833 at 914.910 kb on + strand, within MIT1002_00833 at 914.918 kb on - strand, within MIT1002_00833 at 914.918 kb on - strand, within MIT1002_00833 at 914.918 kb on - strand, within MIT1002_00833 at 914.920 kb on + strand, within MIT1002_00833 at 914.928 kb on - strand, within MIT1002_00833 at 915.027 kb on + strand, within MIT1002_00833 at 915.093 kb on - strand, within MIT1002_00833 at 915.095 kb on + strand, within MIT1002_00833 at 915.095 kb on + strand, within MIT1002_00833 at 915.103 kb on - strand, within MIT1002_00833 at 915.103 kb on - strand, within MIT1002_00833 at 915.103 kb on - strand, within MIT1002_00833 at 915.103 kb on - strand, within MIT1002_00833 at 915.143 kb on - strand, within MIT1002_00833 at 915.270 kb on + strand, within MIT1002_00833 at 915.337 kb on - strand, within MIT1002_00833 at 915.365 kb on - strand, within MIT1002_00833 at 915.365 kb on - strand, within MIT1002_00833
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 913,188 - -1.5 914,751 - +0.3 914,842 + MIT1002_00833 0.17 -2.3 914,844 - MIT1002_00833 0.17 -0.2 914,904 - MIT1002_00833 0.24 -0.4 914,910 + MIT1002_00833 0.24 -2.0 914,918 - MIT1002_00833 0.25 -0.5 914,918 - MIT1002_00833 0.25 +0.5 914,918 - MIT1002_00833 0.25 +0.8 914,920 + MIT1002_00833 0.25 -0.1 914,928 - MIT1002_00833 0.26 -0.8 915,027 + MIT1002_00833 0.36 -1.5 915,093 - MIT1002_00833 0.43 -0.7 915,095 + MIT1002_00833 0.44 -2.0 915,095 + MIT1002_00833 0.44 -2.0 915,103 - MIT1002_00833 0.44 +0.4 915,103 - MIT1002_00833 0.44 -0.1 915,103 - MIT1002_00833 0.44 -1.0 915,103 - MIT1002_00833 0.44 -1.3 915,143 - MIT1002_00833 0.49 -0.9 915,270 + MIT1002_00833 0.62 -1.7 915,337 - MIT1002_00833 0.69 -1.4 915,365 - MIT1002_00833 0.72 +0.8 915,365 - MIT1002_00833 0.72 -1.1
Or see this region's nucleotide sequence