Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00811 and MIT1002_00812 are separated by 298 nucleotides MIT1002_00812 and MIT1002_00813 are separated by 12 nucleotides MIT1002_00813 and MIT1002_00814 are separated by 437 nucleotides
MIT1002_00811: MIT1002_00811 - hypothetical protein, at 897,023 to 897,895
_00811
MIT1002_00812: MIT1002_00812 - 50S ribosomal protein L13, at 898,194 to 898,622
_00812
MIT1002_00813: MIT1002_00813 - 30S ribosomal protein S9, at 898,635 to 899,027
_00813
MIT1002_00814: MIT1002_00814 - Ubiquinol-cytochrome c reductase iron-sulfur subunit, at 899,465 to 900,097
_00814
Position (kb) 898
899 Strain fitness (log2 ratio) -2
-1
0
1
2 at 897.220 kb on - strand, within MIT1002_00811 at 897.229 kb on + strand, within MIT1002_00811 at 897.261 kb on - strand, within MIT1002_00811 at 897.283 kb on + strand, within MIT1002_00811 at 897.288 kb on + strand, within MIT1002_00811 at 897.308 kb on + strand, within MIT1002_00811 at 897.316 kb on + strand, within MIT1002_00811 at 897.316 kb on + strand, within MIT1002_00811 at 897.321 kb on + strand, within MIT1002_00811 at 897.417 kb on - strand, within MIT1002_00811 at 897.423 kb on + strand, within MIT1002_00811 at 897.446 kb on - strand, within MIT1002_00811 at 897.456 kb on + strand, within MIT1002_00811 at 897.458 kb on - strand, within MIT1002_00811 at 897.459 kb on - strand, within MIT1002_00811 at 897.503 kb on + strand, within MIT1002_00811 at 897.531 kb on - strand, within MIT1002_00811 at 897.706 kb on - strand, within MIT1002_00811 at 897.706 kb on - strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.739 kb on + strand, within MIT1002_00811 at 897.756 kb on + strand, within MIT1002_00811 at 897.783 kb on + strand, within MIT1002_00811 at 897.788 kb on + strand, within MIT1002_00811 at 897.788 kb on + strand, within MIT1002_00811 at 897.796 kb on - strand, within MIT1002_00811 at 897.834 kb on + strand at 897.836 kb on + strand at 897.840 kb on - strand at 897.842 kb on - strand at 897.850 kb on - strand at 897.855 kb on + strand at 897.856 kb on + strand at 897.871 kb on + strand at 897.950 kb on - strand at 897.951 kb on + strand at 897.951 kb on + strand at 897.971 kb on - strand at 897.971 kb on - strand at 897.971 kb on - strand at 897.971 kb on - strand at 897.971 kb on - strand at 898.020 kb on + strand at 898.028 kb on - strand at 898.081 kb on + strand at 899.115 kb on - strand at 899.134 kb on - strand at 899.153 kb on + strand at 899.153 kb on + strand at 899.207 kb on + strand at 899.232 kb on - strand at 899.344 kb on - strand at 899.388 kb on - strand at 899.403 kb on - strand at 899.415 kb on + strand at 899.425 kb on + strand at 899.484 kb on + strand at 899.539 kb on + strand, within MIT1002_00814
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 897,220 - MIT1002_00811 0.23 +0.9 897,229 + MIT1002_00811 0.24 -0.1 897,261 - MIT1002_00811 0.27 +0.7 897,283 + MIT1002_00811 0.30 +0.2 897,288 + MIT1002_00811 0.30 -1.3 897,308 + MIT1002_00811 0.33 +2.0 897,316 + MIT1002_00811 0.34 -2.3 897,316 + MIT1002_00811 0.34 +1.3 897,321 + MIT1002_00811 0.34 -1.0 897,417 - MIT1002_00811 0.45 -0.6 897,423 + MIT1002_00811 0.46 -0.2 897,446 - MIT1002_00811 0.48 +0.2 897,456 + MIT1002_00811 0.50 -1.2 897,458 - MIT1002_00811 0.50 +0.7 897,459 - MIT1002_00811 0.50 -0.2 897,503 + MIT1002_00811 0.55 +0.2 897,531 - MIT1002_00811 0.58 +0.3 897,706 - MIT1002_00811 0.78 -0.3 897,706 - MIT1002_00811 0.78 +1.5 897,739 + MIT1002_00811 0.82 -1.0 897,739 + MIT1002_00811 0.82 +0.3 897,739 + MIT1002_00811 0.82 -1.7 897,739 + MIT1002_00811 0.82 -0.2 897,756 + MIT1002_00811 0.84 -0.0 897,783 + MIT1002_00811 0.87 +0.2 897,788 + MIT1002_00811 0.88 -1.7 897,788 + MIT1002_00811 0.88 +0.4 897,796 - MIT1002_00811 0.89 -0.2 897,834 + +1.4 897,836 + +0.5 897,840 - -1.6 897,842 - +0.5 897,850 - +2.4 897,855 + -0.6 897,856 + -0.5 897,871 + +0.2 897,950 - -0.9 897,951 + +0.7 897,951 + +0.5 897,971 - -0.8 897,971 - -1.2 897,971 - +1.0 897,971 - +1.4 897,971 - -1.5 898,020 + +0.3 898,028 - +0.2 898,081 + +0.5 899,115 - -1.1 899,134 - -0.1 899,153 + +0.3 899,153 + -0.1 899,207 + -0.7 899,232 - -0.7 899,344 - -1.4 899,388 - -1.7 899,403 - -1.1 899,415 + -1.4 899,425 + -2.1 899,484 + +1.2 899,539 + MIT1002_00814 0.12 +0.5
Or see this region's nucleotide sequence