Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00788

Experiment: monoculture; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00787 and MIT1002_00788 are separated by 243 nucleotidesMIT1002_00788 and MIT1002_00789 are separated by 78 nucleotidesMIT1002_00789 and MIT1002_00790 are separated by 55 nucleotides MIT1002_00787: MIT1002_00787 - Thiol:disulfide interchange protein DsbC precursor, at 872,365 to 873,087 _00787 MIT1002_00788: MIT1002_00788 - Single-stranded-DNA-specific exonuclease RecJ, at 873,331 to 875,052 _00788 MIT1002_00789: MIT1002_00789 - hypothetical protein, at 875,131 to 875,412 _00789 MIT1002_00790: MIT1002_00790 - Recombination protein O, at 875,468 to 876,181 _00790 Position (kb) 873 874 875 876Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 872.335 kb on - strandat 872.431 kb on - strandat 872.449 kb on + strand, within MIT1002_00787at 872.506 kb on - strand, within MIT1002_00787at 872.535 kb on - strand, within MIT1002_00787at 872.540 kb on - strand, within MIT1002_00787at 872.581 kb on - strand, within MIT1002_00787at 872.806 kb on + strand, within MIT1002_00787at 872.811 kb on - strand, within MIT1002_00787at 872.814 kb on - strand, within MIT1002_00787at 872.833 kb on + strand, within MIT1002_00787at 872.833 kb on + strand, within MIT1002_00787at 872.833 kb on + strand, within MIT1002_00787at 872.833 kb on + strand, within MIT1002_00787at 872.833 kb on + strand, within MIT1002_00787at 872.868 kb on + strand, within MIT1002_00787at 872.972 kb on - strand, within MIT1002_00787at 873.015 kb on + strandat 873.021 kb on - strandat 873.075 kb on - strandat 873.087 kb on - strandat 873.090 kb on + strandat 873.098 kb on - strandat 873.289 kb on + strandat 873.309 kb on + strandat 873.311 kb on + strandat 873.311 kb on + strandat 873.311 kb on - strandat 873.319 kb on - strandat 873.350 kb on + strandat 873.357 kb on + strandat 873.452 kb on + strandat 873.461 kb on + strandat 873.461 kb on + strandat 873.488 kb on - strandat 873.493 kb on - strandat 873.593 kb on + strand, within MIT1002_00788at 873.675 kb on + strand, within MIT1002_00788at 873.687 kb on + strand, within MIT1002_00788at 873.703 kb on - strand, within MIT1002_00788at 873.705 kb on - strand, within MIT1002_00788at 873.729 kb on + strand, within MIT1002_00788at 873.762 kb on - strand, within MIT1002_00788at 873.779 kb on - strand, within MIT1002_00788at 874.011 kb on + strand, within MIT1002_00788at 874.074 kb on - strand, within MIT1002_00788at 874.101 kb on - strand, within MIT1002_00788at 874.101 kb on - strand, within MIT1002_00788at 874.101 kb on - strand, within MIT1002_00788at 874.106 kb on - strand, within MIT1002_00788at 874.117 kb on + strand, within MIT1002_00788at 874.158 kb on - strand, within MIT1002_00788at 874.158 kb on - strand, within MIT1002_00788at 874.173 kb on - strand, within MIT1002_00788at 874.184 kb on + strand, within MIT1002_00788at 874.184 kb on + strand, within MIT1002_00788at 874.192 kb on - strand, within MIT1002_00788at 874.192 kb on - strand, within MIT1002_00788at 874.368 kb on + strand, within MIT1002_00788at 874.376 kb on - strand, within MIT1002_00788at 874.389 kb on - strand, within MIT1002_00788at 874.420 kb on - strand, within MIT1002_00788at 874.446 kb on - strand, within MIT1002_00788at 874.506 kb on + strand, within MIT1002_00788at 874.514 kb on - strand, within MIT1002_00788at 874.577 kb on + strand, within MIT1002_00788at 874.577 kb on + strand, within MIT1002_00788at 874.577 kb on + strand, within MIT1002_00788at 874.577 kb on + strand, within MIT1002_00788at 874.580 kb on - strand, within MIT1002_00788at 874.585 kb on - strand, within MIT1002_00788at 874.585 kb on - strand, within MIT1002_00788at 874.621 kb on + strand, within MIT1002_00788at 874.645 kb on - strand, within MIT1002_00788at 874.698 kb on + strand, within MIT1002_00788at 874.752 kb on + strand, within MIT1002_00788at 874.760 kb on - strand, within MIT1002_00788at 874.776 kb on - strand, within MIT1002_00788at 874.794 kb on - strand, within MIT1002_00788at 874.802 kb on + strand, within MIT1002_00788at 874.810 kb on - strand, within MIT1002_00788at 874.848 kb on + strand, within MIT1002_00788at 874.903 kb on - strandat 874.956 kb on + strandat 875.070 kb on - strandat 875.082 kb on + strandat 875.221 kb on + strand, within MIT1002_00789at 875.229 kb on - strand, within MIT1002_00789at 875.257 kb on - strand, within MIT1002_00789at 875.264 kb on + strand, within MIT1002_00789at 875.272 kb on - strand, within MIT1002_00789at 875.272 kb on - strand, within MIT1002_00789at 875.318 kb on - strand, within MIT1002_00789at 875.454 kb on - strandat 875.460 kb on + strandat 875.490 kb on + strandat 875.490 kb on + strandat 875.490 kb on + strandat 875.498 kb on - strandat 875.498 kb on - strandat 875.498 kb on - strandat 875.507 kb on + strandat 875.511 kb on + strandat 875.517 kb on - strandat 875.617 kb on + strand, within MIT1002_00790at 875.699 kb on - strand, within MIT1002_00790at 875.703 kb on + strand, within MIT1002_00790at 875.711 kb on - strand, within MIT1002_00790at 875.711 kb on - strand, within MIT1002_00790at 875.723 kb on + strand, within MIT1002_00790at 875.723 kb on + strand, within MIT1002_00790at 875.728 kb on + strand, within MIT1002_00790at 875.731 kb on - strand, within MIT1002_00790at 875.742 kb on + strand, within MIT1002_00790at 875.787 kb on + strand, within MIT1002_00790at 875.804 kb on + strand, within MIT1002_00790at 875.844 kb on + strand, within MIT1002_00790at 875.844 kb on + strand, within MIT1002_00790at 875.852 kb on - strand, within MIT1002_00790at 875.852 kb on - strand, within MIT1002_00790at 875.864 kb on - strand, within MIT1002_00790at 875.864 kb on - strand, within MIT1002_00790at 875.902 kb on + strand, within MIT1002_00790at 875.937 kb on - strand, within MIT1002_00790at 875.941 kb on + strand, within MIT1002_00790at 875.972 kb on + strand, within MIT1002_00790at 876.020 kb on + strand, within MIT1002_00790

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
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872,335 - -0.4
872,431 - -1.9
872,449 + MIT1002_00787 0.12 -2.0
872,506 - MIT1002_00787 0.20 -0.4
872,535 - MIT1002_00787 0.24 +1.4
872,540 - MIT1002_00787 0.24 -0.4
872,581 - MIT1002_00787 0.30 +2.3
872,806 + MIT1002_00787 0.61 +0.6
872,811 - MIT1002_00787 0.62 +0.2
872,814 - MIT1002_00787 0.62 -0.5
872,833 + MIT1002_00787 0.65 -1.4
872,833 + MIT1002_00787 0.65 -0.4
872,833 + MIT1002_00787 0.65 +1.2
872,833 + MIT1002_00787 0.65 +2.9
872,833 + MIT1002_00787 0.65 -0.7
872,868 + MIT1002_00787 0.70 -1.2
872,972 - MIT1002_00787 0.84 -0.9
873,015 + +0.1
873,021 - -0.3
873,075 - +0.3
873,087 - +1.0
873,090 + +0.3
873,098 - +0.7
873,289 + +0.5
873,309 + -0.6
873,311 + +0.1
873,311 + +0.5
873,311 - +0.2
873,319 - -0.7
873,350 + +1.3
873,357 + +0.0
873,452 + +0.6
873,461 + -0.6
873,461 + -2.3
873,488 - +0.3
873,493 - +0.2
873,593 + MIT1002_00788 0.15 -0.7
873,675 + MIT1002_00788 0.20 -1.1
873,687 + MIT1002_00788 0.21 -0.2
873,703 - MIT1002_00788 0.22 +0.3
873,705 - MIT1002_00788 0.22 +0.4
873,729 + MIT1002_00788 0.23 -0.0
873,762 - MIT1002_00788 0.25 -0.5
873,779 - MIT1002_00788 0.26 -0.1
874,011 + MIT1002_00788 0.39 +0.6
874,074 - MIT1002_00788 0.43 -0.9
874,101 - MIT1002_00788 0.45 +0.2
874,101 - MIT1002_00788 0.45 +0.8
874,101 - MIT1002_00788 0.45 -0.5
874,106 - MIT1002_00788 0.45 -0.4
874,117 + MIT1002_00788 0.46 -0.5
874,158 - MIT1002_00788 0.48 +0.1
874,158 - MIT1002_00788 0.48 -1.0
874,173 - MIT1002_00788 0.49 +0.7
874,184 + MIT1002_00788 0.50 -0.3
874,184 + MIT1002_00788 0.50 -0.7
874,192 - MIT1002_00788 0.50 -0.9
874,192 - MIT1002_00788 0.50 -0.9
874,368 + MIT1002_00788 0.60 +0.6
874,376 - MIT1002_00788 0.61 -1.7
874,389 - MIT1002_00788 0.61 +1.1
874,420 - MIT1002_00788 0.63 +0.0
874,446 - MIT1002_00788 0.65 -0.9
874,506 + MIT1002_00788 0.68 -0.3
874,514 - MIT1002_00788 0.69 -0.0
874,577 + MIT1002_00788 0.72 -0.4
874,577 + MIT1002_00788 0.72 -0.3
874,577 + MIT1002_00788 0.72 -0.8
874,577 + MIT1002_00788 0.72 -0.9
874,580 - MIT1002_00788 0.73 -1.5
874,585 - MIT1002_00788 0.73 -0.7
874,585 - MIT1002_00788 0.73 +0.7
874,621 + MIT1002_00788 0.75 -0.5
874,645 - MIT1002_00788 0.76 +0.6
874,698 + MIT1002_00788 0.79 +2.2
874,752 + MIT1002_00788 0.83 -1.7
874,760 - MIT1002_00788 0.83 -2.3
874,776 - MIT1002_00788 0.84 +0.7
874,794 - MIT1002_00788 0.85 -0.4
874,802 + MIT1002_00788 0.85 +1.3
874,810 - MIT1002_00788 0.86 +0.6
874,848 + MIT1002_00788 0.88 -0.8
874,903 - +0.1
874,956 + +2.1
875,070 - +0.9
875,082 + +0.3
875,221 + MIT1002_00789 0.32 +0.5
875,229 - MIT1002_00789 0.35 +0.2
875,257 - MIT1002_00789 0.45 -0.7
875,264 + MIT1002_00789 0.47 -0.4
875,272 - MIT1002_00789 0.50 +1.4
875,272 - MIT1002_00789 0.50 -0.1
875,318 - MIT1002_00789 0.66 +0.3
875,454 - -0.4
875,460 + +1.0
875,490 + +0.1
875,490 + -0.7
875,490 + -0.9
875,498 - -2.2
875,498 - -0.2
875,498 - +0.3
875,507 + -1.0
875,511 + -0.9
875,517 - -0.6
875,617 + MIT1002_00790 0.21 +0.7
875,699 - MIT1002_00790 0.32 +0.3
875,703 + MIT1002_00790 0.33 -0.8
875,711 - MIT1002_00790 0.34 +2.2
875,711 - MIT1002_00790 0.34 -0.6
875,723 + MIT1002_00790 0.36 +1.0
875,723 + MIT1002_00790 0.36 -0.1
875,728 + MIT1002_00790 0.36 -0.4
875,731 - MIT1002_00790 0.37 -1.0
875,742 + MIT1002_00790 0.38 -1.8
875,787 + MIT1002_00790 0.45 -0.8
875,804 + MIT1002_00790 0.47 +0.1
875,844 + MIT1002_00790 0.53 -2.5
875,844 + MIT1002_00790 0.53 -0.4
875,852 - MIT1002_00790 0.54 -0.0
875,852 - MIT1002_00790 0.54 -0.8
875,864 - MIT1002_00790 0.55 -3.3
875,864 - MIT1002_00790 0.55 -0.2
875,902 + MIT1002_00790 0.61 -1.1
875,937 - MIT1002_00790 0.66 +0.1
875,941 + MIT1002_00790 0.66 -1.9
875,972 + MIT1002_00790 0.71 -0.7
876,020 + MIT1002_00790 0.77 +0.6

Or see this region's nucleotide sequence