Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00697 and MIT1002_00698 are separated by 311 nucleotides MIT1002_00698 and MIT1002_00699 are separated by 36 nucleotides MIT1002_00699 and MIT1002_00700 are separated by 86 nucleotides
MIT1002_00697: MIT1002_00697 - Bicarbonate transporter BicA, at 761,023 to 762,588
_00697
MIT1002_00698: MIT1002_00698 - Nitrite reductase [NAD(P)H], at 762,900 to 765,449
_00698
MIT1002_00699: MIT1002_00699 - Nitrite reductase [NAD(P)H] small subunit, at 765,486 to 765,857
_00699
MIT1002_00700: MIT1002_00700 - Nitrate reductase, at 765,944 to 768,853
_00700
Position (kb) 762
763
764
765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 761.912 kb on + strand, within MIT1002_00697 at 761.956 kb on + strand, within MIT1002_00697 at 761.970 kb on - strand, within MIT1002_00697 at 762.064 kb on + strand, within MIT1002_00697 at 762.075 kb on + strand, within MIT1002_00697 at 762.201 kb on - strand, within MIT1002_00697 at 762.203 kb on + strand, within MIT1002_00697 at 762.203 kb on + strand, within MIT1002_00697 at 762.203 kb on + strand, within MIT1002_00697 at 762.225 kb on - strand, within MIT1002_00697 at 762.289 kb on + strand, within MIT1002_00697 at 762.297 kb on - strand, within MIT1002_00697 at 762.582 kb on + strand at 762.645 kb on + strand at 762.660 kb on - strand at 762.791 kb on - strand at 762.813 kb on + strand at 762.946 kb on + strand at 763.029 kb on - strand at 763.042 kb on + strand at 763.083 kb on - strand at 763.089 kb on + strand at 763.094 kb on + strand at 763.202 kb on - strand, within MIT1002_00698 at 763.297 kb on - strand, within MIT1002_00698 at 763.360 kb on + strand, within MIT1002_00698 at 763.398 kb on + strand, within MIT1002_00698 at 763.432 kb on - strand, within MIT1002_00698 at 763.437 kb on - strand, within MIT1002_00698 at 763.450 kb on - strand, within MIT1002_00698 at 763.450 kb on - strand, within MIT1002_00698 at 763.515 kb on - strand, within MIT1002_00698 at 763.540 kb on + strand, within MIT1002_00698 at 763.548 kb on - strand, within MIT1002_00698 at 763.627 kb on + strand, within MIT1002_00698 at 763.636 kb on + strand, within MIT1002_00698 at 763.727 kb on + strand, within MIT1002_00698 at 763.735 kb on - strand, within MIT1002_00698 at 763.739 kb on + strand, within MIT1002_00698 at 763.747 kb on - strand, within MIT1002_00698 at 763.747 kb on - strand, within MIT1002_00698 at 763.752 kb on - strand, within MIT1002_00698 at 763.788 kb on + strand, within MIT1002_00698 at 763.796 kb on - strand, within MIT1002_00698 at 763.796 kb on - strand, within MIT1002_00698 at 763.796 kb on - strand, within MIT1002_00698 at 763.809 kb on + strand, within MIT1002_00698 at 763.836 kb on + strand, within MIT1002_00698 at 763.854 kb on + strand, within MIT1002_00698 at 763.917 kb on + strand, within MIT1002_00698 at 763.945 kb on + strand, within MIT1002_00698 at 764.006 kb on + strand, within MIT1002_00698 at 764.011 kb on + strand, within MIT1002_00698 at 764.051 kb on + strand, within MIT1002_00698 at 764.055 kb on - strand, within MIT1002_00698 at 764.106 kb on - strand, within MIT1002_00698 at 764.106 kb on - strand, within MIT1002_00698 at 764.108 kb on + strand, within MIT1002_00698 at 764.137 kb on + strand, within MIT1002_00698 at 764.148 kb on + strand, within MIT1002_00698 at 764.148 kb on + strand, within MIT1002_00698 at 764.150 kb on + strand, within MIT1002_00698 at 764.150 kb on + strand, within MIT1002_00698 at 764.150 kb on + strand, within MIT1002_00698 at 764.158 kb on - strand, within MIT1002_00698 at 764.224 kb on + strand, within MIT1002_00698 at 764.224 kb on + strand, within MIT1002_00698 at 764.232 kb on - strand, within MIT1002_00698 at 764.247 kb on + strand, within MIT1002_00698 at 764.270 kb on + strand, within MIT1002_00698 at 764.270 kb on + strand, within MIT1002_00698 at 764.270 kb on + strand, within MIT1002_00698 at 764.276 kb on - strand, within MIT1002_00698 at 764.276 kb on - strand, within MIT1002_00698 at 764.329 kb on + strand, within MIT1002_00698 at 764.364 kb on + strand, within MIT1002_00698 at 764.438 kb on + strand, within MIT1002_00698 at 764.446 kb on - strand, within MIT1002_00698 at 764.448 kb on + strand, within MIT1002_00698 at 764.448 kb on + strand, within MIT1002_00698 at 764.448 kb on + strand, within MIT1002_00698 at 764.448 kb on + strand, within MIT1002_00698 at 764.448 kb on + strand, within MIT1002_00698 at 764.448 kb on + strand, within MIT1002_00698 at 764.448 kb on + strand, within MIT1002_00698 at 764.456 kb on - strand, within MIT1002_00698 at 764.456 kb on - strand, within MIT1002_00698 at 764.456 kb on - strand, within MIT1002_00698 at 764.456 kb on - strand, within MIT1002_00698 at 764.487 kb on + strand, within MIT1002_00698 at 764.515 kb on + strand, within MIT1002_00698 at 764.538 kb on + strand, within MIT1002_00698 at 764.553 kb on - strand, within MIT1002_00698 at 764.601 kb on - strand, within MIT1002_00698 at 764.611 kb on - strand, within MIT1002_00698 at 764.721 kb on + strand, within MIT1002_00698 at 764.791 kb on + strand, within MIT1002_00698 at 764.796 kb on + strand, within MIT1002_00698 at 764.868 kb on + strand, within MIT1002_00698 at 764.868 kb on + strand, within MIT1002_00698 at 764.895 kb on + strand, within MIT1002_00698 at 764.904 kb on - strand, within MIT1002_00698 at 764.928 kb on + strand, within MIT1002_00698 at 764.930 kb on + strand, within MIT1002_00698 at 764.936 kb on + strand, within MIT1002_00698 at 764.946 kb on - strand, within MIT1002_00698 at 764.997 kb on + strand, within MIT1002_00698 at 764.998 kb on + strand, within MIT1002_00698 at 765.051 kb on - strand, within MIT1002_00698 at 765.071 kb on - strand, within MIT1002_00698 at 765.148 kb on - strand, within MIT1002_00698 at 765.220 kb on + strand at 765.230 kb on + strand at 765.230 kb on + strand at 765.242 kb on + strand at 765.242 kb on + strand at 765.259 kb on + strand at 765.295 kb on + strand at 765.423 kb on - strand at 765.433 kb on - strand at 765.433 kb on - strand at 765.449 kb on + strand at 765.510 kb on - strand at 765.535 kb on + strand, within MIT1002_00699 at 765.543 kb on - strand, within MIT1002_00699 at 765.588 kb on + strand, within MIT1002_00699 at 765.596 kb on - strand, within MIT1002_00699 at 765.702 kb on + strand, within MIT1002_00699 at 765.744 kb on + strand, within MIT1002_00699 at 765.779 kb on + strand, within MIT1002_00699 at 765.779 kb on + strand, within MIT1002_00699 at 765.779 kb on + strand, within MIT1002_00699 at 765.787 kb on - strand, within MIT1002_00699 at 765.817 kb on - strand, within MIT1002_00699 at 765.828 kb on - strand at 765.886 kb on + strand at 765.975 kb on + strand at 765.975 kb on + strand at 766.001 kb on + strand at 766.029 kb on - strand at 766.036 kb on - strand at 766.044 kb on + strand at 766.052 kb on - strand at 766.059 kb on + strand at 766.059 kb on + strand at 766.059 kb on + strand at 766.072 kb on - strand at 766.072 kb on - strand at 766.072 kb on - strand at 766.076 kb on + strand at 766.084 kb on - strand at 766.086 kb on + strand at 766.127 kb on - strand at 766.258 kb on - strand, within MIT1002_00700 at 766.294 kb on + strand, within MIT1002_00700 at 766.307 kb on + strand, within MIT1002_00700 at 766.378 kb on + strand, within MIT1002_00700 at 766.397 kb on + strand, within MIT1002_00700 at 766.402 kb on + strand, within MIT1002_00700 at 766.422 kb on + strand, within MIT1002_00700
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 761,912 + MIT1002_00697 0.57 +1.5 761,956 + MIT1002_00697 0.60 +1.2 761,970 - MIT1002_00697 0.60 -0.9 762,064 + MIT1002_00697 0.66 +0.7 762,075 + MIT1002_00697 0.67 -1.0 762,201 - MIT1002_00697 0.75 -0.3 762,203 + MIT1002_00697 0.75 +0.9 762,203 + MIT1002_00697 0.75 +0.9 762,203 + MIT1002_00697 0.75 -0.3 762,225 - MIT1002_00697 0.77 +0.9 762,289 + MIT1002_00697 0.81 +0.8 762,297 - MIT1002_00697 0.81 +1.2 762,582 + -0.2 762,645 + -2.1 762,660 - -0.3 762,791 - +0.1 762,813 + +0.4 762,946 + +0.2 763,029 - -0.3 763,042 + -1.1 763,083 - -0.6 763,089 + +1.2 763,094 + -0.9 763,202 - MIT1002_00698 0.12 +0.9 763,297 - MIT1002_00698 0.16 -1.2 763,360 + MIT1002_00698 0.18 +0.0 763,398 + MIT1002_00698 0.20 +0.2 763,432 - MIT1002_00698 0.21 +0.4 763,437 - MIT1002_00698 0.21 -0.6 763,450 - MIT1002_00698 0.22 -0.1 763,450 - MIT1002_00698 0.22 +0.8 763,515 - MIT1002_00698 0.24 +1.3 763,540 + MIT1002_00698 0.25 -0.3 763,548 - MIT1002_00698 0.25 +0.1 763,627 + MIT1002_00698 0.29 -0.2 763,636 + MIT1002_00698 0.29 -0.2 763,727 + MIT1002_00698 0.32 -0.1 763,735 - MIT1002_00698 0.33 -0.4 763,739 + MIT1002_00698 0.33 -0.2 763,747 - MIT1002_00698 0.33 +1.5 763,747 - MIT1002_00698 0.33 -0.2 763,752 - MIT1002_00698 0.33 -0.4 763,788 + MIT1002_00698 0.35 +0.1 763,796 - MIT1002_00698 0.35 +1.9 763,796 - MIT1002_00698 0.35 +1.5 763,796 - MIT1002_00698 0.35 -0.3 763,809 + MIT1002_00698 0.36 +1.9 763,836 + MIT1002_00698 0.37 +0.3 763,854 + MIT1002_00698 0.37 -1.0 763,917 + MIT1002_00698 0.40 -0.1 763,945 + MIT1002_00698 0.41 +1.1 764,006 + MIT1002_00698 0.43 +0.1 764,011 + MIT1002_00698 0.44 -0.1 764,051 + MIT1002_00698 0.45 +1.2 764,055 - MIT1002_00698 0.45 +0.2 764,106 - MIT1002_00698 0.47 -0.6 764,106 - MIT1002_00698 0.47 +0.3 764,108 + MIT1002_00698 0.47 -1.5 764,137 + MIT1002_00698 0.49 -0.2 764,148 + MIT1002_00698 0.49 +2.1 764,148 + MIT1002_00698 0.49 +0.9 764,150 + MIT1002_00698 0.49 +1.5 764,150 + MIT1002_00698 0.49 +0.1 764,150 + MIT1002_00698 0.49 -0.3 764,158 - MIT1002_00698 0.49 +0.9 764,224 + MIT1002_00698 0.52 -0.1 764,224 + MIT1002_00698 0.52 +0.1 764,232 - MIT1002_00698 0.52 +0.4 764,247 + MIT1002_00698 0.53 +0.1 764,270 + MIT1002_00698 0.54 +1.2 764,270 + MIT1002_00698 0.54 +0.5 764,270 + MIT1002_00698 0.54 -1.0 764,276 - MIT1002_00698 0.54 -0.7 764,276 - MIT1002_00698 0.54 +0.4 764,329 + MIT1002_00698 0.56 +1.0 764,364 + MIT1002_00698 0.57 -1.5 764,438 + MIT1002_00698 0.60 +1.9 764,446 - MIT1002_00698 0.61 -1.0 764,448 + MIT1002_00698 0.61 +1.1 764,448 + MIT1002_00698 0.61 +0.6 764,448 + MIT1002_00698 0.61 +0.3 764,448 + MIT1002_00698 0.61 +0.4 764,448 + MIT1002_00698 0.61 +0.7 764,448 + MIT1002_00698 0.61 +0.9 764,448 + MIT1002_00698 0.61 -0.1 764,456 - MIT1002_00698 0.61 -0.8 764,456 - MIT1002_00698 0.61 -1.1 764,456 - MIT1002_00698 0.61 -0.3 764,456 - MIT1002_00698 0.61 +0.2 764,487 + MIT1002_00698 0.62 -0.4 764,515 + MIT1002_00698 0.63 +0.9 764,538 + MIT1002_00698 0.64 +1.2 764,553 - MIT1002_00698 0.65 -0.2 764,601 - MIT1002_00698 0.67 +0.2 764,611 - MIT1002_00698 0.67 -0.2 764,721 + MIT1002_00698 0.71 +0.4 764,791 + MIT1002_00698 0.74 -0.2 764,796 + MIT1002_00698 0.74 +0.2 764,868 + MIT1002_00698 0.77 +0.6 764,868 + MIT1002_00698 0.77 +0.6 764,895 + MIT1002_00698 0.78 -0.3 764,904 - MIT1002_00698 0.79 -1.0 764,928 + MIT1002_00698 0.80 +0.4 764,930 + MIT1002_00698 0.80 +1.3 764,936 + MIT1002_00698 0.80 -0.1 764,946 - MIT1002_00698 0.80 +0.5 764,997 + MIT1002_00698 0.82 +0.5 764,998 + MIT1002_00698 0.82 +0.7 765,051 - MIT1002_00698 0.84 +0.4 765,071 - MIT1002_00698 0.85 +0.8 765,148 - MIT1002_00698 0.88 -0.4 765,220 + +1.1 765,230 + -0.2 765,230 + -0.1 765,242 + +1.3 765,242 + +0.4 765,259 + +0.2 765,295 + -1.3 765,423 - +2.1 765,433 - -3.0 765,433 - +0.4 765,449 + +0.5 765,510 - +0.9 765,535 + MIT1002_00699 0.13 +2.7 765,543 - MIT1002_00699 0.15 +0.6 765,588 + MIT1002_00699 0.27 -0.1 765,596 - MIT1002_00699 0.30 +0.1 765,702 + MIT1002_00699 0.58 +0.5 765,744 + MIT1002_00699 0.69 -0.8 765,779 + MIT1002_00699 0.79 +0.3 765,779 + MIT1002_00699 0.79 +1.0 765,779 + MIT1002_00699 0.79 +0.4 765,787 - MIT1002_00699 0.81 -0.1 765,817 - MIT1002_00699 0.89 +2.8 765,828 - +0.6 765,886 + +0.3 765,975 + -0.9 765,975 + +0.3 766,001 + +0.2 766,029 - +0.7 766,036 - +0.7 766,044 + +2.3 766,052 - +1.4 766,059 + -1.2 766,059 + +1.2 766,059 + -0.4 766,072 - +1.0 766,072 - +0.9 766,072 - -1.0 766,076 + +0.7 766,084 - +0.5 766,086 + +1.1 766,127 - +0.1 766,258 - MIT1002_00700 0.11 +0.2 766,294 + MIT1002_00700 0.12 -0.1 766,307 + MIT1002_00700 0.12 -0.4 766,378 + MIT1002_00700 0.15 -0.5 766,397 + MIT1002_00700 0.16 -1.6 766,402 + MIT1002_00700 0.16 +0.6 766,422 + MIT1002_00700 0.16 +1.0
Or see this region's nucleotide sequence