Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00667

Experiment: monoculture; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00666 and MIT1002_00667 are separated by 305 nucleotidesMIT1002_00667 and MIT1002_00668 are separated by 112 nucleotides MIT1002_00666: MIT1002_00666 - Cold-shock DEAD box protein A, at 727,845 to 729,635 _00666 MIT1002_00667: MIT1002_00667 - tetratricopeptide repeat protein, at 729,941 to 732,715 _00667 MIT1002_00668: MIT1002_00668 - Ion transport protein, at 732,828 to 733,682 _00668 Position (kb) 729 730 731 732 733Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 729.004 kb on + strand, within MIT1002_00666at 729.014 kb on + strand, within MIT1002_00666at 729.068 kb on - strand, within MIT1002_00666at 729.095 kb on + strand, within MIT1002_00666at 729.095 kb on + strand, within MIT1002_00666at 729.095 kb on + strand, within MIT1002_00666at 729.095 kb on + strand, within MIT1002_00666at 729.103 kb on - strand, within MIT1002_00666at 729.103 kb on - strand, within MIT1002_00666at 729.103 kb on - strand, within MIT1002_00666at 729.121 kb on - strand, within MIT1002_00666at 729.235 kb on + strand, within MIT1002_00666at 729.240 kb on + strand, within MIT1002_00666at 729.248 kb on - strand, within MIT1002_00666at 729.259 kb on - strand, within MIT1002_00666at 729.308 kb on - strand, within MIT1002_00666at 729.424 kb on + strand, within MIT1002_00666at 729.478 kb on + strandat 729.480 kb on - strandat 729.482 kb on + strandat 729.498 kb on + strandat 729.528 kb on - strandat 729.548 kb on + strandat 729.600 kb on - strandat 729.605 kb on + strandat 729.631 kb on - strandat 729.633 kb on - strandat 729.633 kb on - strandat 729.639 kb on + strandat 729.655 kb on + strandat 729.711 kb on + strandat 729.711 kb on + strandat 729.711 kb on + strandat 729.719 kb on - strandat 729.719 kb on - strandat 729.719 kb on - strandat 729.726 kb on + strandat 729.858 kb on - strandat 729.955 kb on + strandat 729.992 kb on + strandat 729.992 kb on + strandat 730.060 kb on + strandat 730.079 kb on - strandat 730.160 kb on + strandat 730.215 kb on + strandat 730.327 kb on - strand, within MIT1002_00667at 730.327 kb on - strand, within MIT1002_00667at 730.327 kb on - strand, within MIT1002_00667at 730.408 kb on - strand, within MIT1002_00667at 730.449 kb on + strand, within MIT1002_00667at 730.463 kb on - strand, within MIT1002_00667at 730.486 kb on - strand, within MIT1002_00667at 730.486 kb on - strand, within MIT1002_00667at 730.562 kb on - strand, within MIT1002_00667at 730.628 kb on - strand, within MIT1002_00667at 730.643 kb on + strand, within MIT1002_00667at 730.900 kb on - strand, within MIT1002_00667at 730.943 kb on - strand, within MIT1002_00667at 731.021 kb on + strand, within MIT1002_00667at 731.032 kb on + strand, within MIT1002_00667at 731.040 kb on - strand, within MIT1002_00667at 731.146 kb on - strand, within MIT1002_00667at 731.156 kb on + strand, within MIT1002_00667at 731.156 kb on + strand, within MIT1002_00667at 731.164 kb on - strand, within MIT1002_00667at 731.164 kb on - strand, within MIT1002_00667at 731.232 kb on + strand, within MIT1002_00667at 731.240 kb on - strand, within MIT1002_00667at 731.259 kb on + strand, within MIT1002_00667at 731.278 kb on - strand, within MIT1002_00667at 731.278 kb on - strand, within MIT1002_00667at 731.342 kb on - strand, within MIT1002_00667at 731.361 kb on - strand, within MIT1002_00667at 731.441 kb on + strand, within MIT1002_00667at 731.467 kb on + strand, within MIT1002_00667at 731.501 kb on + strand, within MIT1002_00667at 731.558 kb on + strand, within MIT1002_00667at 731.561 kb on + strand, within MIT1002_00667at 731.615 kb on - strand, within MIT1002_00667at 731.641 kb on + strand, within MIT1002_00667at 731.641 kb on + strand, within MIT1002_00667at 731.912 kb on - strand, within MIT1002_00667at 731.945 kb on + strand, within MIT1002_00667at 731.945 kb on + strand, within MIT1002_00667at 731.952 kb on - strand, within MIT1002_00667at 731.977 kb on - strand, within MIT1002_00667at 731.979 kb on - strand, within MIT1002_00667at 732.003 kb on + strand, within MIT1002_00667at 732.011 kb on - strand, within MIT1002_00667at 732.013 kb on + strand, within MIT1002_00667at 732.013 kb on + strand, within MIT1002_00667at 732.013 kb on + strand, within MIT1002_00667at 732.013 kb on + strand, within MIT1002_00667at 732.013 kb on + strand, within MIT1002_00667at 732.013 kb on + strand, within MIT1002_00667at 732.021 kb on - strand, within MIT1002_00667at 732.021 kb on - strand, within MIT1002_00667at 732.036 kb on - strand, within MIT1002_00667at 732.125 kb on + strand, within MIT1002_00667at 732.144 kb on - strand, within MIT1002_00667at 732.267 kb on - strand, within MIT1002_00667at 732.291 kb on - strand, within MIT1002_00667at 732.291 kb on - strand, within MIT1002_00667at 732.291 kb on - strand, within MIT1002_00667at 732.323 kb on - strand, within MIT1002_00667at 732.513 kb on - strandat 732.676 kb on + strandat 732.689 kb on - strandat 732.708 kb on + strandat 732.791 kb on - strandat 732.896 kb on - strandat 732.916 kb on - strand, within MIT1002_00668at 732.922 kb on - strand, within MIT1002_00668at 732.922 kb on - strand, within MIT1002_00668at 732.933 kb on - strand, within MIT1002_00668at 733.086 kb on + strand, within MIT1002_00668at 733.102 kb on + strand, within MIT1002_00668at 733.215 kb on + strand, within MIT1002_00668at 733.215 kb on + strand, within MIT1002_00668at 733.215 kb on + strand, within MIT1002_00668at 733.215 kb on + strand, within MIT1002_00668at 733.215 kb on + strand, within MIT1002_00668at 733.223 kb on - strand, within MIT1002_00668at 733.223 kb on - strand, within MIT1002_00668at 733.223 kb on - strand, within MIT1002_00668at 733.223 kb on - strand, within MIT1002_00668at 733.223 kb on - strand, within MIT1002_00668at 733.223 kb on - strand, within MIT1002_00668at 733.282 kb on + strand, within MIT1002_00668at 733.290 kb on - strand, within MIT1002_00668at 733.290 kb on - strand, within MIT1002_00668at 733.379 kb on + strand, within MIT1002_00668at 733.393 kb on + strand, within MIT1002_00668at 733.496 kb on - strand, within MIT1002_00668at 733.498 kb on + strand, within MIT1002_00668at 733.506 kb on - strand, within MIT1002_00668at 733.629 kb on - strandat 733.667 kb on + strandat 733.690 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
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729,004 + MIT1002_00666 0.65 -2.4
729,014 + MIT1002_00666 0.65 -3.1
729,068 - MIT1002_00666 0.68 -2.0
729,095 + MIT1002_00666 0.70 -2.7
729,095 + MIT1002_00666 0.70 -1.7
729,095 + MIT1002_00666 0.70 -0.3
729,095 + MIT1002_00666 0.70 -0.8
729,103 - MIT1002_00666 0.70 -0.4
729,103 - MIT1002_00666 0.70 -1.3
729,103 - MIT1002_00666 0.70 -3.1
729,121 - MIT1002_00666 0.71 +0.5
729,235 + MIT1002_00666 0.78 -0.6
729,240 + MIT1002_00666 0.78 -0.6
729,248 - MIT1002_00666 0.78 -1.7
729,259 - MIT1002_00666 0.79 -1.5
729,308 - MIT1002_00666 0.82 -2.3
729,424 + MIT1002_00666 0.88 -0.5
729,478 + -0.4
729,480 - -3.4
729,482 + -1.3
729,498 + -0.4
729,528 - +0.2
729,548 + -1.0
729,600 - +0.0
729,605 + +0.0
729,631 - -0.4
729,633 - -1.9
729,633 - -2.9
729,639 + -0.8
729,655 + -1.5
729,711 + -2.0
729,711 + -1.5
729,711 + -1.4
729,719 - -2.6
729,719 - -3.5
729,719 - -0.3
729,726 + -1.2
729,858 - -1.3
729,955 + +0.9
729,992 + -1.5
729,992 + +0.4
730,060 + +0.6
730,079 - +0.0
730,160 + -0.2
730,215 + +1.7
730,327 - MIT1002_00667 0.14 -0.9
730,327 - MIT1002_00667 0.14 -0.5
730,327 - MIT1002_00667 0.14 +0.2
730,408 - MIT1002_00667 0.17 +0.3
730,449 + MIT1002_00667 0.18 +0.3
730,463 - MIT1002_00667 0.19 -0.0
730,486 - MIT1002_00667 0.20 +1.2
730,486 - MIT1002_00667 0.20 +0.4
730,562 - MIT1002_00667 0.22 -0.9
730,628 - MIT1002_00667 0.25 +2.5
730,643 + MIT1002_00667 0.25 +1.0
730,900 - MIT1002_00667 0.35 -0.1
730,943 - MIT1002_00667 0.36 +0.4
731,021 + MIT1002_00667 0.39 +1.4
731,032 + MIT1002_00667 0.39 -0.6
731,040 - MIT1002_00667 0.40 -0.8
731,146 - MIT1002_00667 0.43 -2.8
731,156 + MIT1002_00667 0.44 +0.6
731,156 + MIT1002_00667 0.44 +0.9
731,164 - MIT1002_00667 0.44 +0.9
731,164 - MIT1002_00667 0.44 +1.9
731,232 + MIT1002_00667 0.47 -0.5
731,240 - MIT1002_00667 0.47 +0.4
731,259 + MIT1002_00667 0.47 +0.3
731,278 - MIT1002_00667 0.48 +0.3
731,278 - MIT1002_00667 0.48 -0.4
731,342 - MIT1002_00667 0.50 +0.4
731,361 - MIT1002_00667 0.51 -0.4
731,441 + MIT1002_00667 0.54 +0.4
731,467 + MIT1002_00667 0.55 +0.1
731,501 + MIT1002_00667 0.56 -0.4
731,558 + MIT1002_00667 0.58 -0.2
731,561 + MIT1002_00667 0.58 +0.4
731,615 - MIT1002_00667 0.60 +0.2
731,641 + MIT1002_00667 0.61 -3.2
731,641 + MIT1002_00667 0.61 +1.4
731,912 - MIT1002_00667 0.71 +0.8
731,945 + MIT1002_00667 0.72 -1.0
731,945 + MIT1002_00667 0.72 +1.4
731,952 - MIT1002_00667 0.72 +0.9
731,977 - MIT1002_00667 0.73 -1.5
731,979 - MIT1002_00667 0.73 +0.2
732,003 + MIT1002_00667 0.74 +0.5
732,011 - MIT1002_00667 0.75 -1.9
732,013 + MIT1002_00667 0.75 +0.1
732,013 + MIT1002_00667 0.75 +0.2
732,013 + MIT1002_00667 0.75 +0.6
732,013 + MIT1002_00667 0.75 -2.0
732,013 + MIT1002_00667 0.75 -0.6
732,013 + MIT1002_00667 0.75 +0.7
732,021 - MIT1002_00667 0.75 +0.6
732,021 - MIT1002_00667 0.75 +0.6
732,036 - MIT1002_00667 0.75 -0.5
732,125 + MIT1002_00667 0.79 +1.4
732,144 - MIT1002_00667 0.79 -0.2
732,267 - MIT1002_00667 0.84 -0.3
732,291 - MIT1002_00667 0.85 +1.2
732,291 - MIT1002_00667 0.85 +0.1
732,291 - MIT1002_00667 0.85 +0.2
732,323 - MIT1002_00667 0.86 -0.1
732,513 - +0.2
732,676 + -0.5
732,689 - +1.2
732,708 + +0.8
732,791 - -0.1
732,896 - -1.4
732,916 - MIT1002_00668 0.10 -0.3
732,922 - MIT1002_00668 0.11 -0.1
732,922 - MIT1002_00668 0.11 +0.9
732,933 - MIT1002_00668 0.12 -0.1
733,086 + MIT1002_00668 0.30 +0.8
733,102 + MIT1002_00668 0.32 -0.1
733,215 + MIT1002_00668 0.45 -1.0
733,215 + MIT1002_00668 0.45 +0.1
733,215 + MIT1002_00668 0.45 +0.4
733,215 + MIT1002_00668 0.45 +0.4
733,215 + MIT1002_00668 0.45 -2.6
733,223 - MIT1002_00668 0.46 +0.8
733,223 - MIT1002_00668 0.46 -0.3
733,223 - MIT1002_00668 0.46 -1.5
733,223 - MIT1002_00668 0.46 +0.7
733,223 - MIT1002_00668 0.46 +0.5
733,223 - MIT1002_00668 0.46 -0.1
733,282 + MIT1002_00668 0.53 -0.0
733,290 - MIT1002_00668 0.54 +0.1
733,290 - MIT1002_00668 0.54 +1.7
733,379 + MIT1002_00668 0.64 -0.1
733,393 + MIT1002_00668 0.66 -1.8
733,496 - MIT1002_00668 0.78 +1.1
733,498 + MIT1002_00668 0.78 -0.2
733,506 - MIT1002_00668 0.79 -0.5
733,629 - -0.1
733,667 + -0.1
733,690 - +0.2

Or see this region's nucleotide sequence