Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00664

Experiment: monoculture; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00663 and MIT1002_00664 are separated by 7 nucleotidesMIT1002_00664 and MIT1002_00665 are separated by 319 nucleotides MIT1002_00663: MIT1002_00663 - cytochrome c oxidase accessory protein CcoG, at 723,628 to 725,001 _00663 MIT1002_00664: MIT1002_00664 - hypothetical protein, at 725,009 to 726,013 _00664 MIT1002_00665: MIT1002_00665 - Siroheme synthase, at 726,333 to 727,715 _00665 Position (kb) 725 726 727Strain fitness (log2 ratio) -2 -1 0 1 2at 724.047 kb on + strand, within MIT1002_00663at 724.047 kb on + strand, within MIT1002_00663at 724.079 kb on + strand, within MIT1002_00663at 724.099 kb on - strand, within MIT1002_00663at 724.102 kb on + strand, within MIT1002_00663at 724.192 kb on + strand, within MIT1002_00663at 724.223 kb on - strand, within MIT1002_00663at 724.347 kb on - strand, within MIT1002_00663at 724.364 kb on + strand, within MIT1002_00663at 724.394 kb on - strand, within MIT1002_00663at 724.426 kb on + strand, within MIT1002_00663at 724.434 kb on - strand, within MIT1002_00663at 724.439 kb on - strand, within MIT1002_00663at 724.444 kb on - strand, within MIT1002_00663at 724.479 kb on + strand, within MIT1002_00663at 724.487 kb on - strand, within MIT1002_00663at 724.492 kb on - strand, within MIT1002_00663at 724.492 kb on - strand, within MIT1002_00663at 724.496 kb on + strand, within MIT1002_00663at 724.504 kb on - strand, within MIT1002_00663at 724.629 kb on + strand, within MIT1002_00663at 724.649 kb on - strand, within MIT1002_00663at 724.665 kb on + strand, within MIT1002_00663at 724.723 kb on - strand, within MIT1002_00663at 724.734 kb on + strand, within MIT1002_00663at 724.742 kb on - strand, within MIT1002_00663at 724.770 kb on + strand, within MIT1002_00663at 724.823 kb on - strand, within MIT1002_00663at 724.838 kb on + strand, within MIT1002_00663at 724.843 kb on + strand, within MIT1002_00663at 724.846 kb on - strand, within MIT1002_00663at 724.896 kb on + strandat 724.896 kb on + strandat 724.904 kb on - strandat 724.904 kb on - strandat 724.904 kb on - strandat 724.957 kb on - strandat 724.979 kb on - strandat 725.054 kb on + strandat 725.103 kb on + strandat 725.147 kb on + strand, within MIT1002_00664at 725.172 kb on + strand, within MIT1002_00664at 725.265 kb on + strand, within MIT1002_00664at 725.267 kb on - strand, within MIT1002_00664at 725.267 kb on - strand, within MIT1002_00664at 725.275 kb on + strand, within MIT1002_00664at 725.275 kb on + strand, within MIT1002_00664at 725.275 kb on + strand, within MIT1002_00664at 725.275 kb on + strand, within MIT1002_00664at 725.277 kb on + strand, within MIT1002_00664at 725.282 kb on + strand, within MIT1002_00664at 725.290 kb on - strand, within MIT1002_00664at 725.298 kb on + strand, within MIT1002_00664at 725.327 kb on - strand, within MIT1002_00664at 725.341 kb on + strand, within MIT1002_00664at 725.359 kb on - strand, within MIT1002_00664at 725.658 kb on + strand, within MIT1002_00664at 725.660 kb on - strand, within MIT1002_00664at 725.687 kb on + strand, within MIT1002_00664at 725.689 kb on - strand, within MIT1002_00664at 725.695 kb on + strand, within MIT1002_00664at 725.703 kb on + strand, within MIT1002_00664at 725.703 kb on + strand, within MIT1002_00664at 725.703 kb on + strand, within MIT1002_00664at 725.711 kb on - strand, within MIT1002_00664at 725.747 kb on - strand, within MIT1002_00664at 725.782 kb on - strand, within MIT1002_00664at 725.782 kb on - strand, within MIT1002_00664at 725.782 kb on - strand, within MIT1002_00664at 725.793 kb on - strand, within MIT1002_00664at 725.827 kb on - strand, within MIT1002_00664at 725.829 kb on - strand, within MIT1002_00664at 725.893 kb on + strand, within MIT1002_00664at 725.900 kb on - strand, within MIT1002_00664at 725.949 kb on - strandat 725.962 kb on + strandat 726.007 kb on + strandat 726.054 kb on + strandat 726.109 kb on + strandat 726.109 kb on + strandat 726.109 kb on + strandat 726.117 kb on - strandat 726.117 kb on - strandat 726.117 kb on - strandat 726.134 kb on - strandat 726.174 kb on + strandat 726.174 kb on + strandat 726.182 kb on - strandat 726.215 kb on + strandat 726.230 kb on - strandat 726.343 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
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724,047 + MIT1002_00663 0.30 +0.0
724,047 + MIT1002_00663 0.30 +0.1
724,079 + MIT1002_00663 0.33 -1.2
724,099 - MIT1002_00663 0.34 -0.9
724,102 + MIT1002_00663 0.34 -2.0
724,192 + MIT1002_00663 0.41 +0.4
724,223 - MIT1002_00663 0.43 +0.0
724,347 - MIT1002_00663 0.52 +0.4
724,364 + MIT1002_00663 0.54 -0.1
724,394 - MIT1002_00663 0.56 -0.7
724,426 + MIT1002_00663 0.58 -1.1
724,434 - MIT1002_00663 0.59 -0.1
724,439 - MIT1002_00663 0.59 +0.8
724,444 - MIT1002_00663 0.59 +0.4
724,479 + MIT1002_00663 0.62 -1.6
724,487 - MIT1002_00663 0.63 -0.4
724,492 - MIT1002_00663 0.63 -1.1
724,492 - MIT1002_00663 0.63 +0.9
724,496 + MIT1002_00663 0.63 -0.5
724,504 - MIT1002_00663 0.64 -1.1
724,629 + MIT1002_00663 0.73 +1.8
724,649 - MIT1002_00663 0.74 +0.5
724,665 + MIT1002_00663 0.75 +2.0
724,723 - MIT1002_00663 0.80 -0.2
724,734 + MIT1002_00663 0.80 -0.3
724,742 - MIT1002_00663 0.81 +0.2
724,770 + MIT1002_00663 0.83 +0.7
724,823 - MIT1002_00663 0.87 -0.2
724,838 + MIT1002_00663 0.88 -0.1
724,843 + MIT1002_00663 0.88 +2.7
724,846 - MIT1002_00663 0.89 +0.3
724,896 + -0.5
724,896 + +0.2
724,904 - -0.3
724,904 - +1.3
724,904 - +1.4
724,957 - -1.6
724,979 - -0.2
725,054 + +2.6
725,103 + -1.0
725,147 + MIT1002_00664 0.14 +0.5
725,172 + MIT1002_00664 0.16 +0.6
725,265 + MIT1002_00664 0.25 -0.2
725,267 - MIT1002_00664 0.26 -0.6
725,267 - MIT1002_00664 0.26 +0.3
725,275 + MIT1002_00664 0.26 -0.0
725,275 + MIT1002_00664 0.26 -0.5
725,275 + MIT1002_00664 0.26 +0.3
725,275 + MIT1002_00664 0.26 -0.0
725,277 + MIT1002_00664 0.27 -0.7
725,282 + MIT1002_00664 0.27 -0.1
725,290 - MIT1002_00664 0.28 +0.3
725,298 + MIT1002_00664 0.29 -0.4
725,327 - MIT1002_00664 0.32 -0.4
725,341 + MIT1002_00664 0.33 +0.5
725,359 - MIT1002_00664 0.35 +2.5
725,658 + MIT1002_00664 0.65 -0.0
725,660 - MIT1002_00664 0.65 -0.2
725,687 + MIT1002_00664 0.67 -0.4
725,689 - MIT1002_00664 0.68 +0.1
725,695 + MIT1002_00664 0.68 -2.4
725,703 + MIT1002_00664 0.69 -0.8
725,703 + MIT1002_00664 0.69 -1.5
725,703 + MIT1002_00664 0.69 +0.1
725,711 - MIT1002_00664 0.70 +1.2
725,747 - MIT1002_00664 0.73 -1.0
725,782 - MIT1002_00664 0.77 -1.6
725,782 - MIT1002_00664 0.77 -0.1
725,782 - MIT1002_00664 0.77 +0.5
725,793 - MIT1002_00664 0.78 -1.2
725,827 - MIT1002_00664 0.81 +2.5
725,829 - MIT1002_00664 0.82 +0.2
725,893 + MIT1002_00664 0.88 +1.0
725,900 - MIT1002_00664 0.89 -1.1
725,949 - -0.0
725,962 + -0.8
726,007 + +1.6
726,054 + +1.1
726,109 + +2.2
726,109 + -0.1
726,109 + +0.3
726,117 - +0.0
726,117 - +0.6
726,117 - +0.4
726,134 - -0.4
726,174 + +1.3
726,174 + +0.9
726,182 - -1.0
726,215 + +0.8
726,230 - +0.4
726,343 + +0.2

Or see this region's nucleotide sequence