Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00648 and MIT1002_00649 are separated by 3 nucleotides MIT1002_00649 and MIT1002_00650 are separated by 4 nucleotides MIT1002_00650 and MIT1002_00651 are separated by 8 nucleotides MIT1002_00651 and MIT1002_00652 are separated by 9 nucleotides
MIT1002_00648: MIT1002_00648 - Phosphoenolpyruvate-protein phosphotransferase, at 702,840 to 705,158
_00648
MIT1002_00649: MIT1002_00649 - Sulfite exporter TauE/SafE, at 705,162 to 705,968
_00649
MIT1002_00650: MIT1002_00650 - Prolipoprotein diacylglyceryl transferase, at 705,973 to 706,785
_00650
MIT1002_00651: MIT1002_00651 - Thymidylate synthase, at 706,794 to 707,627
_00651
MIT1002_00652: MIT1002_00652 - Chemotaxis protein CheY, at 707,637 to 708,707
_00652
Position (kb) 705
706
707 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 704.997 kb on - strand at 704.997 kb on - strand at 705.040 kb on + strand at 705.043 kb on - strand at 705.046 kb on + strand at 705.070 kb on + strand at 705.084 kb on + strand at 705.122 kb on - strand at 705.122 kb on - strand at 705.183 kb on + strand at 705.183 kb on - strand at 705.191 kb on - strand at 705.288 kb on + strand, within MIT1002_00649 at 705.305 kb on - strand, within MIT1002_00649 at 705.403 kb on - strand, within MIT1002_00649 at 705.419 kb on + strand, within MIT1002_00649 at 705.419 kb on + strand, within MIT1002_00649 at 705.427 kb on - strand, within MIT1002_00649 at 705.427 kb on - strand, within MIT1002_00649 at 705.429 kb on + strand, within MIT1002_00649 at 705.429 kb on + strand, within MIT1002_00649 at 705.437 kb on - strand, within MIT1002_00649 at 705.437 kb on - strand, within MIT1002_00649 at 705.437 kb on - strand, within MIT1002_00649 at 705.437 kb on - strand, within MIT1002_00649 at 705.437 kb on - strand, within MIT1002_00649 at 705.494 kb on + strand, within MIT1002_00649 at 705.494 kb on + strand, within MIT1002_00649 at 705.502 kb on - strand, within MIT1002_00649 at 705.623 kb on - strand, within MIT1002_00649 at 705.623 kb on - strand, within MIT1002_00649 at 705.638 kb on - strand, within MIT1002_00649 at 705.656 kb on + strand, within MIT1002_00649 at 705.754 kb on + strand, within MIT1002_00649 at 705.787 kb on + strand, within MIT1002_00649 at 705.799 kb on + strand, within MIT1002_00649 at 705.837 kb on + strand, within MIT1002_00649 at 705.844 kb on + strand, within MIT1002_00649 at 705.844 kb on + strand, within MIT1002_00649 at 705.844 kb on + strand, within MIT1002_00649 at 705.844 kb on + strand, within MIT1002_00649 at 705.863 kb on + strand, within MIT1002_00649 at 705.868 kb on + strand, within MIT1002_00649 at 705.868 kb on + strand, within MIT1002_00649 at 706.727 kb on + strand at 707.629 kb on + strand at 707.696 kb on + strand at 707.696 kb on + strand at 707.704 kb on - strand at 707.745 kb on + strand, within MIT1002_00652 at 707.772 kb on + strand, within MIT1002_00652 at 707.772 kb on + strand, within MIT1002_00652 at 707.780 kb on - strand, within MIT1002_00652 at 707.780 kb on - strand, within MIT1002_00652
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 704,997 - -1.5 704,997 - +1.5 705,040 + +0.2 705,043 - -0.6 705,046 + +0.1 705,070 + +0.0 705,084 + -0.7 705,122 - -0.1 705,122 - +1.4 705,183 + +0.2 705,183 - -1.6 705,191 - +0.0 705,288 + MIT1002_00649 0.16 +1.0 705,305 - MIT1002_00649 0.18 +0.5 705,403 - MIT1002_00649 0.30 -0.1 705,419 + MIT1002_00649 0.32 -1.2 705,419 + MIT1002_00649 0.32 +1.1 705,427 - MIT1002_00649 0.33 +0.9 705,427 - MIT1002_00649 0.33 -1.7 705,429 + MIT1002_00649 0.33 -0.8 705,429 + MIT1002_00649 0.33 +0.2 705,437 - MIT1002_00649 0.34 +0.6 705,437 - MIT1002_00649 0.34 -0.6 705,437 - MIT1002_00649 0.34 -0.3 705,437 - MIT1002_00649 0.34 -0.5 705,437 - MIT1002_00649 0.34 -0.1 705,494 + MIT1002_00649 0.41 +1.1 705,494 + MIT1002_00649 0.41 +0.8 705,502 - MIT1002_00649 0.42 -0.6 705,623 - MIT1002_00649 0.57 +0.9 705,623 - MIT1002_00649 0.57 -1.1 705,638 - MIT1002_00649 0.59 -1.4 705,656 + MIT1002_00649 0.61 -0.3 705,754 + MIT1002_00649 0.73 -0.3 705,787 + MIT1002_00649 0.77 -0.2 705,799 + MIT1002_00649 0.79 -0.9 705,837 + MIT1002_00649 0.84 -1.6 705,844 + MIT1002_00649 0.85 -2.0 705,844 + MIT1002_00649 0.85 +1.4 705,844 + MIT1002_00649 0.85 -0.4 705,844 + MIT1002_00649 0.85 -1.1 705,863 + MIT1002_00649 0.87 +0.9 705,868 + MIT1002_00649 0.87 +0.4 705,868 + MIT1002_00649 0.87 -2.9 706,727 + -1.3 707,629 + -0.8 707,696 + -0.6 707,696 + +0.4 707,704 - +0.4 707,745 + MIT1002_00652 0.10 -0.9 707,772 + MIT1002_00652 0.13 -0.4 707,772 + MIT1002_00652 0.13 +0.5 707,780 - MIT1002_00652 0.13 -1.4 707,780 - MIT1002_00652 0.13 -0.4
Or see this region's nucleotide sequence