Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00609 and MIT1002_00610 are separated by 81 nucleotides MIT1002_00610 and MIT1002_00611 are separated by 218 nucleotides MIT1002_00611 and MIT1002_00612 overlap by 1 nucleotides MIT1002_00612 and MIT1002_00613 are separated by 200 nucleotides MIT1002_00613 and MIT1002_00614 are separated by 198 nucleotides
MIT1002_00609: MIT1002_00609 - Regulatory protein BlaI, at 663,585 to 663,965
_00609
MIT1002_00610: MIT1002_00610 - hypothetical protein, at 664,047 to 664,400
_00610
MIT1002_00611: MIT1002_00611 - hypothetical protein, at 664,619 to 664,789
_00611
MIT1002_00612: MIT1002_00612 - death-on-curing family protein, at 664,789 to 665,190
_00612
MIT1002_00613: MIT1002_00613 - hypothetical protein, at 665,391 to 665,489
_00613
MIT1002_00614: MIT1002_00614 - site-specific tyrosine recombinase XerC, at 665,688 to 666,002
_00614
Position (kb) 664
665 Strain fitness (log2 ratio) -2
-1
0
1 at 663.624 kb on + strand, within MIT1002_00609 at 663.668 kb on - strand, within MIT1002_00609 at 663.786 kb on - strand, within MIT1002_00609 at 663.807 kb on + strand, within MIT1002_00609 at 663.845 kb on + strand, within MIT1002_00609 at 663.865 kb on + strand, within MIT1002_00609 at 663.989 kb on + strand at 664.063 kb on - strand at 664.067 kb on + strand at 664.128 kb on - strand, within MIT1002_00610 at 664.256 kb on - strand, within MIT1002_00610 at 664.324 kb on + strand, within MIT1002_00610 at 664.324 kb on + strand, within MIT1002_00610 at 664.332 kb on - strand, within MIT1002_00610 at 664.332 kb on - strand, within MIT1002_00610 at 664.332 kb on - strand, within MIT1002_00610 at 664.343 kb on - strand, within MIT1002_00610 at 664.353 kb on - strand, within MIT1002_00610 at 664.353 kb on - strand, within MIT1002_00610
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 663,624 + MIT1002_00609 0.10 +1.4 663,668 - MIT1002_00609 0.22 +1.1 663,786 - MIT1002_00609 0.53 -2.5 663,807 + MIT1002_00609 0.58 +0.7 663,845 + MIT1002_00609 0.68 -0.0 663,865 + MIT1002_00609 0.73 +0.3 663,989 + -0.0 664,063 - -0.2 664,067 + -0.1 664,128 - MIT1002_00610 0.23 -0.9 664,256 - MIT1002_00610 0.59 -0.2 664,324 + MIT1002_00610 0.78 -1.0 664,324 + MIT1002_00610 0.78 +1.4 664,332 - MIT1002_00610 0.81 +0.2 664,332 - MIT1002_00610 0.81 -0.0 664,332 - MIT1002_00610 0.81 +0.7 664,343 - MIT1002_00610 0.84 +1.1 664,353 - MIT1002_00610 0.86 -0.1 664,353 - MIT1002_00610 0.86 -0.0
Or see this region's nucleotide sequence