Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00584

Experiment: monoculture; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00583 and MIT1002_00584 are separated by 342 nucleotidesMIT1002_00584 and MIT1002_00585 overlap by 4 nucleotides MIT1002_00583: MIT1002_00583 - hypothetical protein, at 630,181 to 631,170 _00583 MIT1002_00584: MIT1002_00584 - hypothetical protein, at 631,513 to 632,106 _00584 MIT1002_00585: MIT1002_00585 - UvsW helicase, at 632,103 to 633,470 _00585 Position (kb) 631 632 633Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 630.513 kb on - strand, within MIT1002_00583at 630.513 kb on - strand, within MIT1002_00583at 630.523 kb on + strand, within MIT1002_00583at 630.532 kb on + strand, within MIT1002_00583at 630.535 kb on + strand, within MIT1002_00583at 630.540 kb on - strand, within MIT1002_00583at 630.577 kb on + strand, within MIT1002_00583at 630.587 kb on + strand, within MIT1002_00583at 630.595 kb on - strand, within MIT1002_00583at 630.628 kb on - strand, within MIT1002_00583at 630.689 kb on + strand, within MIT1002_00583at 630.689 kb on + strand, within MIT1002_00583at 630.730 kb on - strand, within MIT1002_00583at 630.731 kb on + strand, within MIT1002_00583at 630.744 kb on + strand, within MIT1002_00583at 630.744 kb on + strand, within MIT1002_00583at 630.744 kb on + strand, within MIT1002_00583at 630.751 kb on - strand, within MIT1002_00583at 630.809 kb on + strand, within MIT1002_00583at 630.817 kb on - strand, within MIT1002_00583at 630.859 kb on - strand, within MIT1002_00583at 630.859 kb on - strand, within MIT1002_00583at 630.881 kb on - strand, within MIT1002_00583at 630.936 kb on + strand, within MIT1002_00583at 630.941 kb on + strand, within MIT1002_00583at 630.950 kb on - strand, within MIT1002_00583at 630.959 kb on - strand, within MIT1002_00583at 630.987 kb on + strand, within MIT1002_00583at 630.987 kb on + strand, within MIT1002_00583at 630.995 kb on - strand, within MIT1002_00583at 630.995 kb on - strand, within MIT1002_00583at 631.007 kb on - strand, within MIT1002_00583at 631.028 kb on - strand, within MIT1002_00583at 631.030 kb on + strand, within MIT1002_00583at 631.030 kb on + strand, within MIT1002_00583at 631.030 kb on + strand, within MIT1002_00583at 631.070 kb on - strand, within MIT1002_00583at 631.103 kb on + strandat 631.137 kb on + strandat 631.346 kb on + strandat 631.375 kb on - strandat 631.432 kb on + strandat 631.450 kb on + strandat 631.456 kb on - strandat 631.494 kb on - strandat 631.690 kb on - strand, within MIT1002_00584at 631.690 kb on - strand, within MIT1002_00584at 631.700 kb on - strand, within MIT1002_00584at 631.752 kb on + strand, within MIT1002_00584at 631.762 kb on + strand, within MIT1002_00584at 631.770 kb on - strand, within MIT1002_00584at 631.803 kb on - strand, within MIT1002_00584at 631.969 kb on - strand, within MIT1002_00584at 632.000 kb on + strand, within MIT1002_00584at 632.008 kb on - strand, within MIT1002_00584at 632.108 kb on + strandat 632.108 kb on + strandat 632.116 kb on - strandat 632.131 kb on + strandat 632.137 kb on + strandat 632.303 kb on + strand, within MIT1002_00585at 632.314 kb on + strand, within MIT1002_00585at 632.322 kb on - strand, within MIT1002_00585at 632.352 kb on - strand, within MIT1002_00585at 632.462 kb on + strand, within MIT1002_00585at 632.462 kb on + strand, within MIT1002_00585at 632.558 kb on - strand, within MIT1002_00585at 632.565 kb on + strand, within MIT1002_00585at 632.565 kb on + strand, within MIT1002_00585at 632.573 kb on + strand, within MIT1002_00585at 632.573 kb on - strand, within MIT1002_00585at 632.583 kb on - strand, within MIT1002_00585at 632.791 kb on + strand, within MIT1002_00585at 632.799 kb on - strand, within MIT1002_00585at 632.799 kb on - strand, within MIT1002_00585at 632.799 kb on - strand, within MIT1002_00585at 632.810 kb on + strand, within MIT1002_00585at 632.824 kb on + strand, within MIT1002_00585at 632.824 kb on + strand, within MIT1002_00585at 632.894 kb on + strand, within MIT1002_00585at 632.905 kb on + strand, within MIT1002_00585at 632.913 kb on - strand, within MIT1002_00585at 632.945 kb on - strand, within MIT1002_00585at 632.955 kb on - strand, within MIT1002_00585at 633.062 kb on + strand, within MIT1002_00585at 633.062 kb on + strand, within MIT1002_00585at 633.062 kb on + strand, within MIT1002_00585

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
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630,513 - MIT1002_00583 0.34 -0.0
630,513 - MIT1002_00583 0.34 +0.4
630,523 + MIT1002_00583 0.35 -0.5
630,532 + MIT1002_00583 0.35 -0.3
630,535 + MIT1002_00583 0.36 -0.2
630,540 - MIT1002_00583 0.36 +2.2
630,577 + MIT1002_00583 0.40 -0.9
630,587 + MIT1002_00583 0.41 +0.1
630,595 - MIT1002_00583 0.42 +0.2
630,628 - MIT1002_00583 0.45 +0.4
630,689 + MIT1002_00583 0.51 -0.4
630,689 + MIT1002_00583 0.51 -0.8
630,730 - MIT1002_00583 0.55 -2.0
630,731 + MIT1002_00583 0.56 -0.2
630,744 + MIT1002_00583 0.57 +1.0
630,744 + MIT1002_00583 0.57 -0.8
630,744 + MIT1002_00583 0.57 -1.1
630,751 - MIT1002_00583 0.58 +0.1
630,809 + MIT1002_00583 0.63 +0.7
630,817 - MIT1002_00583 0.64 +0.2
630,859 - MIT1002_00583 0.68 -0.0
630,859 - MIT1002_00583 0.68 +0.8
630,881 - MIT1002_00583 0.71 +0.0
630,936 + MIT1002_00583 0.76 +0.4
630,941 + MIT1002_00583 0.77 +0.1
630,950 - MIT1002_00583 0.78 +0.8
630,959 - MIT1002_00583 0.79 +0.1
630,987 + MIT1002_00583 0.81 -0.7
630,987 + MIT1002_00583 0.81 -0.0
630,995 - MIT1002_00583 0.82 -0.2
630,995 - MIT1002_00583 0.82 -0.9
631,007 - MIT1002_00583 0.83 +0.7
631,028 - MIT1002_00583 0.86 +0.3
631,030 + MIT1002_00583 0.86 +1.0
631,030 + MIT1002_00583 0.86 +0.9
631,030 + MIT1002_00583 0.86 -1.1
631,070 - MIT1002_00583 0.90 -0.9
631,103 + +0.6
631,137 + +0.4
631,346 + +0.8
631,375 - +0.4
631,432 + -0.2
631,450 + -0.1
631,456 - -0.7
631,494 - -0.1
631,690 - MIT1002_00584 0.30 +0.2
631,690 - MIT1002_00584 0.30 +0.0
631,700 - MIT1002_00584 0.31 +1.1
631,752 + MIT1002_00584 0.40 +2.3
631,762 + MIT1002_00584 0.42 -0.4
631,770 - MIT1002_00584 0.43 -0.6
631,803 - MIT1002_00584 0.49 -0.3
631,969 - MIT1002_00584 0.77 -1.4
632,000 + MIT1002_00584 0.82 +0.3
632,008 - MIT1002_00584 0.83 +1.2
632,108 + -0.4
632,108 + +1.0
632,116 - +1.5
632,131 + +0.1
632,137 + -0.5
632,303 + MIT1002_00585 0.15 +1.5
632,314 + MIT1002_00585 0.15 -0.4
632,322 - MIT1002_00585 0.16 +0.4
632,352 - MIT1002_00585 0.18 -0.0
632,462 + MIT1002_00585 0.26 +0.1
632,462 + MIT1002_00585 0.26 +0.6
632,558 - MIT1002_00585 0.33 -0.7
632,565 + MIT1002_00585 0.34 -0.4
632,565 + MIT1002_00585 0.34 +1.4
632,573 + MIT1002_00585 0.34 +1.0
632,573 - MIT1002_00585 0.34 +0.6
632,583 - MIT1002_00585 0.35 +0.2
632,791 + MIT1002_00585 0.50 +0.7
632,799 - MIT1002_00585 0.51 +0.5
632,799 - MIT1002_00585 0.51 -0.1
632,799 - MIT1002_00585 0.51 +0.8
632,810 + MIT1002_00585 0.52 -0.9
632,824 + MIT1002_00585 0.53 +0.2
632,824 + MIT1002_00585 0.53 +0.9
632,894 + MIT1002_00585 0.58 -0.1
632,905 + MIT1002_00585 0.59 +0.6
632,913 - MIT1002_00585 0.59 +2.1
632,945 - MIT1002_00585 0.62 +0.1
632,955 - MIT1002_00585 0.62 +0.1
633,062 + MIT1002_00585 0.70 +0.1
633,062 + MIT1002_00585 0.70 -2.8
633,062 + MIT1002_00585 0.70 -0.3

Or see this region's nucleotide sequence