Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00565 and MIT1002_00568 are separated by 644 nucleotides MIT1002_00568 and MIT1002_00569 are separated by 74 nucleotides
MIT1002_00565: MIT1002_00565 - hypothetical protein, at 610,414 to 611,118
_00565
MIT1002_00568: MIT1002_00568 - Group II intron-encoded protein LtrA, at 611,763 to 613,112
_00568
MIT1002_00569: MIT1002_00569 - hypothetical protein, at 613,187 to 613,795
_00569
Position (kb) 611
612
613
614 Strain fitness (log2 ratio) -2
-1
0
1 at 610.939 kb on - strand, within MIT1002_00565 at 610.946 kb on + strand, within MIT1002_00565 at 611.056 kb on + strand at 611.064 kb on - strand at 611.064 kb on - strand at 611.064 kb on - strand at 611.130 kb on - strand at 611.203 kb on - strand at 611.207 kb on + strand at 611.230 kb on + strand at 611.268 kb on - strand at 611.273 kb on - strand at 611.709 kb on + strand at 613.166 kb on + strand at 613.373 kb on + strand, within MIT1002_00569 at 613.383 kb on + strand, within MIT1002_00569 at 613.386 kb on - strand, within MIT1002_00569 at 613.386 kb on - strand, within MIT1002_00569 at 613.391 kb on - strand, within MIT1002_00569 at 613.400 kb on - strand, within MIT1002_00569 at 613.497 kb on + strand, within MIT1002_00569 at 613.499 kb on + strand, within MIT1002_00569 at 613.507 kb on - strand, within MIT1002_00569 at 613.517 kb on + strand, within MIT1002_00569 at 613.601 kb on - strand, within MIT1002_00569 at 613.687 kb on - strand, within MIT1002_00569 at 613.802 kb on - strand at 613.943 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 610,939 - MIT1002_00565 0.74 +1.2 610,946 + MIT1002_00565 0.75 -0.2 611,056 + -1.0 611,064 - +0.2 611,064 - -0.8 611,064 - +0.7 611,130 - -0.4 611,203 - +0.4 611,207 + +0.0 611,230 + -0.4 611,268 - +0.0 611,273 - -1.0 611,709 + +0.1 613,166 + -2.4 613,373 + MIT1002_00569 0.31 +0.7 613,383 + MIT1002_00569 0.32 -0.0 613,386 - MIT1002_00569 0.33 +0.1 613,386 - MIT1002_00569 0.33 -2.3 613,391 - MIT1002_00569 0.33 +0.7 613,400 - MIT1002_00569 0.35 +0.4 613,497 + MIT1002_00569 0.51 -0.5 613,499 + MIT1002_00569 0.51 -1.4 613,507 - MIT1002_00569 0.53 -1.2 613,517 + MIT1002_00569 0.54 -0.6 613,601 - MIT1002_00569 0.68 +0.1 613,687 - MIT1002_00569 0.82 -2.2 613,802 - +0.8 613,943 - -0.0
Or see this region's nucleotide sequence