Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00543 and MIT1002_00544 are separated by 190 nucleotides MIT1002_00544 and MIT1002_00545 are separated by 425 nucleotides
MIT1002_00543: MIT1002_00543 - N-acetylmuramic acid 6-phosphate etherase, at 592,609 to 593,622
_00543
MIT1002_00544: MIT1002_00544 - Alanine racemase, at 593,813 to 594,889
_00544
MIT1002_00545: MIT1002_00545 - hypothetical protein, at 595,315 to 596,040
_00545
Position (kb) 593
594
595 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 592.861 kb on - strand, within MIT1002_00543 at 592.913 kb on + strand, within MIT1002_00543 at 592.955 kb on - strand, within MIT1002_00543 at 592.966 kb on + strand, within MIT1002_00543 at 593.068 kb on + strand, within MIT1002_00543 at 593.084 kb on - strand, within MIT1002_00543 at 593.084 kb on - strand, within MIT1002_00543 at 593.084 kb on - strand, within MIT1002_00543 at 593.084 kb on - strand, within MIT1002_00543 at 593.084 kb on - strand, within MIT1002_00543 at 593.084 kb on - strand, within MIT1002_00543 at 593.108 kb on + strand, within MIT1002_00543 at 593.118 kb on + strand, within MIT1002_00543 at 593.126 kb on - strand, within MIT1002_00543 at 593.126 kb on - strand, within MIT1002_00543 at 593.139 kb on + strand, within MIT1002_00543 at 593.157 kb on - strand, within MIT1002_00543 at 593.175 kb on + strand, within MIT1002_00543 at 593.227 kb on - strand, within MIT1002_00543 at 593.252 kb on + strand, within MIT1002_00543 at 593.538 kb on - strand at 593.550 kb on + strand at 593.592 kb on + strand at 593.661 kb on + strand at 593.668 kb on + strand at 593.669 kb on - strand at 593.676 kb on - strand at 593.731 kb on - strand at 593.736 kb on + strand at 593.736 kb on + strand at 594.613 kb on + strand, within MIT1002_00544 at 594.993 kb on - strand at 595.031 kb on + strand at 595.031 kb on + strand at 595.036 kb on + strand at 595.036 kb on + strand at 595.087 kb on + strand at 595.102 kb on + strand at 595.115 kb on - strand at 595.115 kb on - strand at 595.121 kb on + strand at 595.129 kb on - strand at 595.129 kb on - strand at 595.129 kb on - strand at 595.140 kb on + strand at 595.353 kb on + strand at 595.353 kb on + strand at 595.353 kb on + strand at 595.353 kb on + strand at 595.361 kb on - strand at 595.361 kb on - strand at 595.361 kb on - strand at 595.361 kb on - strand at 595.361 kb on - strand at 595.438 kb on + strand, within MIT1002_00545 at 595.438 kb on + strand, within MIT1002_00545 at 595.446 kb on - strand, within MIT1002_00545 at 595.451 kb on - strand, within MIT1002_00545 at 595.463 kb on + strand, within MIT1002_00545 at 595.463 kb on + strand, within MIT1002_00545 at 595.463 kb on + strand, within MIT1002_00545 at 595.463 kb on + strand, within MIT1002_00545 at 595.463 kb on + strand, within MIT1002_00545 at 595.471 kb on - strand, within MIT1002_00545 at 595.471 kb on - strand, within MIT1002_00545 at 595.557 kb on + strand, within MIT1002_00545 at 595.614 kb on + strand, within MIT1002_00545 at 595.629 kb on + strand, within MIT1002_00545 at 595.650 kb on + strand, within MIT1002_00545 at 595.658 kb on - strand, within MIT1002_00545 at 595.658 kb on - strand, within MIT1002_00545 at 595.680 kb on + strand, within MIT1002_00545 at 595.798 kb on + strand, within MIT1002_00545 at 595.806 kb on - strand, within MIT1002_00545 at 595.807 kb on + strand, within MIT1002_00545 at 595.849 kb on - strand, within MIT1002_00545 at 595.851 kb on - strand, within MIT1002_00545 at 595.882 kb on + strand, within MIT1002_00545
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 592,861 - MIT1002_00543 0.25 +0.9 592,913 + MIT1002_00543 0.30 -0.9 592,955 - MIT1002_00543 0.34 -0.6 592,966 + MIT1002_00543 0.35 -0.4 593,068 + MIT1002_00543 0.45 +0.1 593,084 - MIT1002_00543 0.47 -0.9 593,084 - MIT1002_00543 0.47 +0.0 593,084 - MIT1002_00543 0.47 -0.8 593,084 - MIT1002_00543 0.47 +0.8 593,084 - MIT1002_00543 0.47 +0.7 593,084 - MIT1002_00543 0.47 -0.4 593,108 + MIT1002_00543 0.49 -0.2 593,118 + MIT1002_00543 0.50 +0.0 593,126 - MIT1002_00543 0.51 +0.1 593,126 - MIT1002_00543 0.51 +0.4 593,139 + MIT1002_00543 0.52 -1.0 593,157 - MIT1002_00543 0.54 +1.1 593,175 + MIT1002_00543 0.56 +0.5 593,227 - MIT1002_00543 0.61 +0.5 593,252 + MIT1002_00543 0.63 +0.2 593,538 - +1.3 593,550 + +0.0 593,592 + +0.4 593,661 + -0.1 593,668 + -2.6 593,669 - -0.2 593,676 - +0.1 593,731 - +1.1 593,736 + +0.5 593,736 + -1.1 594,613 + MIT1002_00544 0.74 -0.6 594,993 - -0.6 595,031 + -0.0 595,031 + -1.2 595,036 + -1.5 595,036 + -1.2 595,087 + +0.0 595,102 + +0.2 595,115 - +0.2 595,115 - +0.5 595,121 + +1.7 595,129 - -0.2 595,129 - -1.6 595,129 - +0.6 595,140 + +0.2 595,353 + -1.1 595,353 + -0.6 595,353 + +0.2 595,353 + -3.3 595,361 - +0.7 595,361 - +0.1 595,361 - +0.8 595,361 - +0.7 595,361 - +0.2 595,438 + MIT1002_00545 0.17 +1.6 595,438 + MIT1002_00545 0.17 +0.7 595,446 - MIT1002_00545 0.18 -0.4 595,451 - MIT1002_00545 0.19 -1.8 595,463 + MIT1002_00545 0.20 -0.3 595,463 + MIT1002_00545 0.20 -0.5 595,463 + MIT1002_00545 0.20 +0.2 595,463 + MIT1002_00545 0.20 -1.2 595,463 + MIT1002_00545 0.20 +0.9 595,471 - MIT1002_00545 0.21 +0.0 595,471 - MIT1002_00545 0.21 +1.5 595,557 + MIT1002_00545 0.33 +0.1 595,614 + MIT1002_00545 0.41 -0.4 595,629 + MIT1002_00545 0.43 +0.2 595,650 + MIT1002_00545 0.46 -0.8 595,658 - MIT1002_00545 0.47 +0.0 595,658 - MIT1002_00545 0.47 -1.2 595,680 + MIT1002_00545 0.50 -0.1 595,798 + MIT1002_00545 0.67 -0.0 595,806 - MIT1002_00545 0.68 -1.4 595,807 + MIT1002_00545 0.68 +0.3 595,849 - MIT1002_00545 0.74 +0.1 595,851 - MIT1002_00545 0.74 -0.4 595,882 + MIT1002_00545 0.78 -2.0
Or see this region's nucleotide sequence