Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00515 and MIT1002_00516 are separated by 100 nucleotides MIT1002_00516 and MIT1002_00517 are separated by 271 nucleotides MIT1002_00517 and MIT1002_00518 are separated by 229 nucleotides
MIT1002_00515: MIT1002_00515 - ATP-dependent RNA helicase RhlB, at 559,143 to 560,435
_00515
MIT1002_00516: MIT1002_00516 - Thioredoxin-1, at 560,536 to 560,862
_00516
MIT1002_00517: MIT1002_00517 - hypothetical protein, at 561,134 to 562,399
_00517
MIT1002_00518: MIT1002_00518 - putative hydrolase YxeP, at 562,629 to 563,927
_00518
Position (kb) 561
562
563 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 560.136 kb on + strand, within MIT1002_00515 at 560.157 kb on + strand, within MIT1002_00515 at 560.274 kb on + strand, within MIT1002_00515 at 560.295 kb on + strand, within MIT1002_00515 at 560.295 kb on + strand, within MIT1002_00515 at 560.303 kb on - strand, within MIT1002_00515 at 560.370 kb on + strand at 560.373 kb on + strand at 560.437 kb on + strand at 560.437 kb on + strand at 560.438 kb on - strand at 560.445 kb on - strand at 560.445 kb on - strand at 560.445 kb on - strand at 560.919 kb on + strand at 561.041 kb on + strand at 561.049 kb on - strand at 561.052 kb on + strand at 561.052 kb on + strand at 561.052 kb on + strand at 562.374 kb on + strand at 562.579 kb on + strand at 562.597 kb on - strand at 562.597 kb on - strand at 562.662 kb on + strand at 562.662 kb on + strand at 562.662 kb on + strand at 562.697 kb on + strand at 562.705 kb on - strand at 562.705 kb on - strand at 562.724 kb on + strand at 562.742 kb on - strand at 562.805 kb on + strand, within MIT1002_00518 at 562.878 kb on + strand, within MIT1002_00518 at 562.895 kb on + strand, within MIT1002_00518 at 562.897 kb on - strand, within MIT1002_00518 at 562.947 kb on - strand, within MIT1002_00518 at 562.991 kb on - strand, within MIT1002_00518 at 563.013 kb on + strand, within MIT1002_00518 at 563.018 kb on + strand, within MIT1002_00518 at 563.025 kb on + strand, within MIT1002_00518 at 563.078 kb on + strand, within MIT1002_00518 at 563.122 kb on + strand, within MIT1002_00518 at 563.124 kb on + strand, within MIT1002_00518 at 563.132 kb on - strand, within MIT1002_00518 at 563.316 kb on + strand, within MIT1002_00518 at 563.337 kb on - strand, within MIT1002_00518 at 563.347 kb on + strand, within MIT1002_00518 at 563.388 kb on + strand, within MIT1002_00518 at 563.396 kb on - strand, within MIT1002_00518 at 563.397 kb on + strand, within MIT1002_00518
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 560,136 + MIT1002_00515 0.77 +0.7 560,157 + MIT1002_00515 0.78 +3.0 560,274 + MIT1002_00515 0.87 +0.3 560,295 + MIT1002_00515 0.89 +0.4 560,295 + MIT1002_00515 0.89 +2.3 560,303 - MIT1002_00515 0.90 -0.6 560,370 + -0.4 560,373 + +0.7 560,437 + +0.9 560,437 + +1.6 560,438 - -0.5 560,445 - -1.3 560,445 - -1.7 560,445 - -1.5 560,919 + +0.3 561,041 + -0.2 561,049 - -0.2 561,052 + -2.6 561,052 + -0.2 561,052 + -0.8 562,374 + -1.2 562,579 + -0.1 562,597 - -0.0 562,597 - +0.8 562,662 + -0.4 562,662 + -0.0 562,662 + +0.6 562,697 + -0.4 562,705 - -0.2 562,705 - +2.6 562,724 + +0.0 562,742 - +0.0 562,805 + MIT1002_00518 0.14 +0.8 562,878 + MIT1002_00518 0.19 +1.1 562,895 + MIT1002_00518 0.20 +0.5 562,897 - MIT1002_00518 0.21 +1.8 562,947 - MIT1002_00518 0.24 +1.0 562,991 - MIT1002_00518 0.28 +1.4 563,013 + MIT1002_00518 0.30 +1.1 563,018 + MIT1002_00518 0.30 +0.4 563,025 + MIT1002_00518 0.30 -1.2 563,078 + MIT1002_00518 0.35 +0.5 563,122 + MIT1002_00518 0.38 -2.0 563,124 + MIT1002_00518 0.38 -0.3 563,132 - MIT1002_00518 0.39 -0.3 563,316 + MIT1002_00518 0.53 -0.0 563,337 - MIT1002_00518 0.55 +0.7 563,347 + MIT1002_00518 0.55 +0.3 563,388 + MIT1002_00518 0.58 +0.3 563,396 - MIT1002_00518 0.59 +0.4 563,397 + MIT1002_00518 0.59 -0.5
Or see this region's nucleotide sequence