Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00300 and MIT1002_00301 are separated by 216 nucleotides MIT1002_00301 and MIT1002_00302 overlap by 13 nucleotides MIT1002_00302 and MIT1002_00303 are separated by 122 nucleotides
MIT1002_00300: MIT1002_00300 - hypothetical protein, at 325,468 to 325,710
_00300
MIT1002_00301: MIT1002_00301 - Diacylglycerol kinase, at 325,927 to 326,334
_00301
MIT1002_00302: MIT1002_00302 - Phosphoethanolamine transferase EptA, at 326,322 to 327,929
_00302
MIT1002_00303: MIT1002_00303 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 328,052 to 329,794
_00303
Position (kb) 326
327
328 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 325.337 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.337 kb on + strand at 325.345 kb on - strand at 325.345 kb on - strand at 325.345 kb on - strand at 325.345 kb on - strand at 325.345 kb on - strand at 325.356 kb on + strand at 325.357 kb on - strand at 325.364 kb on - strand at 325.379 kb on + strand at 325.390 kb on + strand at 325.390 kb on + strand at 325.391 kb on + strand at 325.392 kb on + strand at 325.393 kb on - strand at 325.399 kb on - strand at 325.400 kb on - strand at 325.404 kb on + strand at 325.404 kb on + strand at 325.411 kb on - strand at 325.412 kb on - strand at 325.432 kb on + strand at 325.504 kb on - strand, within MIT1002_00300 at 325.549 kb on - strand, within MIT1002_00300 at 325.633 kb on - strand, within MIT1002_00300 at 325.635 kb on - strand, within MIT1002_00300 at 325.733 kb on + strand at 325.733 kb on + strand at 325.738 kb on + strand at 325.739 kb on + strand at 325.739 kb on + strand at 325.772 kb on - strand at 325.773 kb on - strand at 325.802 kb on + strand at 325.857 kb on - strand at 325.867 kb on + strand at 325.876 kb on + strand at 325.880 kb on + strand at 325.882 kb on + strand at 325.887 kb on + strand at 325.890 kb on - strand at 325.890 kb on - strand at 325.892 kb on + strand at 325.892 kb on + strand at 325.892 kb on + strand at 325.892 kb on + strand at 325.894 kb on + strand at 325.895 kb on - strand at 325.895 kb on - strand at 325.900 kb on - strand at 325.908 kb on - strand at 325.927 kb on - strand at 325.942 kb on - strand at 325.950 kb on - strand at 325.952 kb on + strand at 325.952 kb on + strand at 325.954 kb on + strand at 325.954 kb on + strand at 325.954 kb on + strand at 325.954 kb on + strand at 325.954 kb on + strand at 325.960 kb on - strand at 325.960 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.962 kb on - strand at 325.999 kb on + strand, within MIT1002_00301 at 325.999 kb on + strand, within MIT1002_00301 at 326.007 kb on - strand, within MIT1002_00301 at 326.007 kb on - strand, within MIT1002_00301 at 326.007 kb on - strand, within MIT1002_00301 at 326.007 kb on - strand, within MIT1002_00301 at 326.017 kb on + strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.025 kb on - strand, within MIT1002_00301 at 326.050 kb on + strand, within MIT1002_00301 at 326.057 kb on - strand, within MIT1002_00301 at 326.057 kb on - strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.103 kb on + strand, within MIT1002_00301 at 326.111 kb on - strand, within MIT1002_00301 at 326.111 kb on - strand, within MIT1002_00301 at 326.190 kb on - strand, within MIT1002_00301 at 326.322 kb on - strand at 326.365 kb on - strand at 326.378 kb on - strand at 326.595 kb on - strand, within MIT1002_00302 at 326.653 kb on + strand, within MIT1002_00302 at 326.731 kb on + strand, within MIT1002_00302 at 326.735 kb on - strand, within MIT1002_00302 at 326.771 kb on + strand, within MIT1002_00302 at 326.771 kb on + strand, within MIT1002_00302 at 326.776 kb on + strand, within MIT1002_00302 at 326.779 kb on - strand, within MIT1002_00302 at 326.779 kb on - strand, within MIT1002_00302 at 326.779 kb on - strand, within MIT1002_00302 at 326.779 kb on - strand, within MIT1002_00302 at 326.779 kb on - strand, within MIT1002_00302 at 326.781 kb on + strand, within MIT1002_00302 at 326.804 kb on + strand, within MIT1002_00302 at 326.809 kb on + strand, within MIT1002_00302 at 326.810 kb on - strand, within MIT1002_00302 at 326.827 kb on - strand, within MIT1002_00302 at 326.895 kb on + strand, within MIT1002_00302 at 326.903 kb on + strand, within MIT1002_00302 at 326.903 kb on + strand, within MIT1002_00302 at 326.911 kb on + strand, within MIT1002_00302 at 326.921 kb on - strand, within MIT1002_00302 at 326.927 kb on + strand, within MIT1002_00302 at 326.934 kb on - strand, within MIT1002_00302 at 326.947 kb on + strand, within MIT1002_00302 at 326.953 kb on - strand, within MIT1002_00302 at 326.955 kb on - strand, within MIT1002_00302 at 326.982 kb on + strand, within MIT1002_00302 at 327.062 kb on + strand, within MIT1002_00302 at 327.080 kb on - strand, within MIT1002_00302 at 327.108 kb on + strand, within MIT1002_00302 at 327.117 kb on - strand, within MIT1002_00302 at 327.155 kb on + strand, within MIT1002_00302 at 327.189 kb on + strand, within MIT1002_00302 at 327.196 kb on + strand, within MIT1002_00302 at 327.224 kb on - strand, within MIT1002_00302 at 327.232 kb on - strand, within MIT1002_00302 at 327.273 kb on + strand, within MIT1002_00302 at 327.273 kb on + strand, within MIT1002_00302 at 327.273 kb on + strand, within MIT1002_00302 at 327.281 kb on - strand, within MIT1002_00302 at 327.311 kb on - strand, within MIT1002_00302 at 327.332 kb on - strand, within MIT1002_00302 at 327.387 kb on + strand, within MIT1002_00302 at 327.392 kb on + strand, within MIT1002_00302 at 327.400 kb on - strand, within MIT1002_00302 at 327.438 kb on + strand, within MIT1002_00302 at 327.453 kb on + strand, within MIT1002_00302 at 327.489 kb on - strand, within MIT1002_00302 at 327.574 kb on - strand, within MIT1002_00302 at 327.648 kb on - strand, within MIT1002_00302 at 327.665 kb on + strand, within MIT1002_00302 at 327.705 kb on - strand, within MIT1002_00302 at 327.719 kb on - strand, within MIT1002_00302 at 327.762 kb on - strand, within MIT1002_00302 at 327.772 kb on - strand at 327.807 kb on + strand at 327.815 kb on - strand at 327.815 kb on - strand at 327.815 kb on - strand at 327.815 kb on - strand at 327.815 kb on - strand at 327.831 kb on + strand at 327.887 kb on + strand at 327.947 kb on - strand at 327.947 kb on - strand at 328.075 kb on - strand at 328.098 kb on + strand at 328.149 kb on - strand at 328.162 kb on - strand at 328.170 kb on - strand at 328.170 kb on - strand at 328.170 kb on - strand at 328.171 kb on + strand at 328.178 kb on - strand at 328.237 kb on + strand, within MIT1002_00303 at 328.296 kb on + strand, within MIT1002_00303 at 328.297 kb on + strand, within MIT1002_00303 at 328.297 kb on + strand, within MIT1002_00303 at 328.297 kb on + strand, within MIT1002_00303 at 328.301 kb on + strand, within MIT1002_00303 at 328.305 kb on - strand, within MIT1002_00303 at 328.305 kb on - strand, within MIT1002_00303 at 328.305 kb on - strand, within MIT1002_00303 at 328.305 kb on - strand, within MIT1002_00303 at 328.445 kb on - strand, within MIT1002_00303 at 328.449 kb on + strand, within MIT1002_00303 at 328.449 kb on + strand, within MIT1002_00303 at 328.457 kb on - strand, within MIT1002_00303 at 328.457 kb on - strand, within MIT1002_00303 at 328.457 kb on - strand, within MIT1002_00303 at 328.462 kb on - strand, within MIT1002_00303 at 328.472 kb on + strand, within MIT1002_00303 at 328.472 kb on + strand, within MIT1002_00303 at 328.497 kb on + strand, within MIT1002_00303 at 328.541 kb on - strand, within MIT1002_00303 at 328.541 kb on - strand, within MIT1002_00303 at 328.555 kb on - strand, within MIT1002_00303 at 328.582 kb on + strand, within MIT1002_00303 at 328.666 kb on - strand, within MIT1002_00303 at 328.692 kb on + strand, within MIT1002_00303 at 328.742 kb on + strand, within MIT1002_00303 at 328.750 kb on - strand, within MIT1002_00303 at 328.772 kb on + strand, within MIT1002_00303 at 328.772 kb on + strand, within MIT1002_00303 at 328.772 kb on + strand, within MIT1002_00303 at 328.772 kb on + strand, within MIT1002_00303 at 328.772 kb on + strand, within MIT1002_00303 at 328.772 kb on + strand, within MIT1002_00303 at 328.772 kb on + strand, within MIT1002_00303 at 328.775 kb on - strand, within MIT1002_00303 at 328.780 kb on - strand, within MIT1002_00303 at 328.780 kb on - strand, within MIT1002_00303 at 328.780 kb on - strand, within MIT1002_00303 at 328.780 kb on - strand, within MIT1002_00303 at 328.780 kb on - strand, within MIT1002_00303 at 328.830 kb on - strand, within MIT1002_00303 at 328.838 kb on + strand, within MIT1002_00303 at 328.838 kb on + strand, within MIT1002_00303 at 328.852 kb on - strand, within MIT1002_00303
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 325,337 + +0.5 325,337 + -0.2 325,337 + +0.7 325,337 + +0.4 325,337 + +0.4 325,337 + -0.5 325,337 + -0.8 325,345 - -0.0 325,345 - -0.5 325,345 - +0.6 325,345 - -0.1 325,345 - +0.8 325,356 + +0.8 325,357 - +0.6 325,364 - +0.3 325,379 + -0.0 325,390 + +0.9 325,390 + -0.7 325,391 + -0.8 325,392 + -1.1 325,393 - +0.7 325,399 - -0.8 325,400 - +0.8 325,404 + +0.6 325,404 + +0.1 325,411 - +0.4 325,412 - +0.3 325,432 + -0.9 325,504 - MIT1002_00300 0.15 +0.1 325,549 - MIT1002_00300 0.33 -0.4 325,633 - MIT1002_00300 0.68 -0.6 325,635 - MIT1002_00300 0.69 -0.9 325,733 + +0.4 325,733 + +0.4 325,738 + -0.6 325,739 + -0.0 325,739 + -0.0 325,772 - +0.7 325,773 - -1.4 325,802 + -0.6 325,857 - +0.3 325,867 + -1.8 325,876 + +0.4 325,880 + -0.1 325,882 + +0.0 325,887 + -0.7 325,890 - -0.6 325,890 - -0.4 325,892 + -1.6 325,892 + +0.3 325,892 + -0.7 325,892 + -0.1 325,894 + -0.4 325,895 - -1.3 325,895 - +0.2 325,900 - +0.7 325,908 - +0.5 325,927 - -0.2 325,942 - +1.8 325,950 - +0.6 325,952 + +0.5 325,952 + -1.3 325,954 + -0.4 325,954 + -1.0 325,954 + +0.0 325,954 + -1.8 325,954 + +0.6 325,960 - +0.3 325,960 - -0.6 325,962 - +0.5 325,962 - -0.5 325,962 - +0.0 325,962 - +0.3 325,962 - +1.3 325,962 - +1.2 325,962 - +1.0 325,962 - -0.1 325,999 + MIT1002_00301 0.18 -0.2 325,999 + MIT1002_00301 0.18 +0.0 326,007 - MIT1002_00301 0.20 +0.1 326,007 - MIT1002_00301 0.20 -0.6 326,007 - MIT1002_00301 0.20 -2.4 326,007 - MIT1002_00301 0.20 +0.1 326,017 + MIT1002_00301 0.22 -0.5 326,025 - MIT1002_00301 0.24 -0.6 326,025 - MIT1002_00301 0.24 +1.5 326,025 - MIT1002_00301 0.24 -0.7 326,025 - MIT1002_00301 0.24 +0.1 326,025 - MIT1002_00301 0.24 +0.2 326,025 - MIT1002_00301 0.24 +2.4 326,025 - MIT1002_00301 0.24 +1.6 326,050 + MIT1002_00301 0.30 -0.7 326,057 - MIT1002_00301 0.32 +0.4 326,057 - MIT1002_00301 0.32 -1.2 326,103 + MIT1002_00301 0.43 +0.3 326,103 + MIT1002_00301 0.43 +0.3 326,103 + MIT1002_00301 0.43 +0.1 326,103 + MIT1002_00301 0.43 -0.4 326,103 + MIT1002_00301 0.43 +1.1 326,103 + MIT1002_00301 0.43 +0.1 326,111 - MIT1002_00301 0.45 +0.1 326,111 - MIT1002_00301 0.45 -0.2 326,190 - MIT1002_00301 0.64 +0.9 326,322 - -1.7 326,365 - +0.4 326,378 - -1.8 326,595 - MIT1002_00302 0.17 -0.4 326,653 + MIT1002_00302 0.21 +0.9 326,731 + MIT1002_00302 0.25 +0.9 326,735 - MIT1002_00302 0.26 +1.1 326,771 + MIT1002_00302 0.28 -1.4 326,771 + MIT1002_00302 0.28 +0.6 326,776 + MIT1002_00302 0.28 -0.7 326,779 - MIT1002_00302 0.28 -0.2 326,779 - MIT1002_00302 0.28 +0.1 326,779 - MIT1002_00302 0.28 -0.9 326,779 - MIT1002_00302 0.28 -0.2 326,779 - MIT1002_00302 0.28 +2.8 326,781 + MIT1002_00302 0.29 +0.2 326,804 + MIT1002_00302 0.30 +0.2 326,809 + MIT1002_00302 0.30 +0.2 326,810 - MIT1002_00302 0.30 +0.7 326,827 - MIT1002_00302 0.31 -0.2 326,895 + MIT1002_00302 0.36 -0.5 326,903 + MIT1002_00302 0.36 +1.5 326,903 + MIT1002_00302 0.36 +2.2 326,911 + MIT1002_00302 0.37 +0.5 326,921 - MIT1002_00302 0.37 +1.0 326,927 + MIT1002_00302 0.38 +0.7 326,934 - MIT1002_00302 0.38 -0.0 326,947 + MIT1002_00302 0.39 -1.8 326,953 - MIT1002_00302 0.39 -0.3 326,955 - MIT1002_00302 0.39 -0.4 326,982 + MIT1002_00302 0.41 +0.0 327,062 + MIT1002_00302 0.46 +1.0 327,080 - MIT1002_00302 0.47 -0.9 327,108 + MIT1002_00302 0.49 -0.7 327,117 - MIT1002_00302 0.49 +0.5 327,155 + MIT1002_00302 0.52 +0.4 327,189 + MIT1002_00302 0.54 +0.1 327,196 + MIT1002_00302 0.54 +0.8 327,224 - MIT1002_00302 0.56 +0.2 327,232 - MIT1002_00302 0.57 +0.4 327,273 + MIT1002_00302 0.59 +0.3 327,273 + MIT1002_00302 0.59 -0.9 327,273 + MIT1002_00302 0.59 -0.6 327,281 - MIT1002_00302 0.60 +0.6 327,311 - MIT1002_00302 0.62 -1.7 327,332 - MIT1002_00302 0.63 +0.3 327,387 + MIT1002_00302 0.66 -1.4 327,392 + MIT1002_00302 0.67 +0.2 327,400 - MIT1002_00302 0.67 +0.6 327,438 + MIT1002_00302 0.69 +0.5 327,453 + MIT1002_00302 0.70 +0.9 327,489 - MIT1002_00302 0.73 -0.5 327,574 - MIT1002_00302 0.78 -0.5 327,648 - MIT1002_00302 0.82 +0.7 327,665 + MIT1002_00302 0.84 -0.7 327,705 - MIT1002_00302 0.86 +0.2 327,719 - MIT1002_00302 0.87 +0.3 327,762 - MIT1002_00302 0.90 +2.0 327,772 - +0.2 327,807 + -3.8 327,815 - +1.1 327,815 - +1.4 327,815 - +0.3 327,815 - +1.0 327,815 - +0.4 327,831 + +0.7 327,887 + -1.7 327,947 - -0.2 327,947 - +0.4 328,075 - -0.1 328,098 + +0.3 328,149 - +0.5 328,162 - -0.8 328,170 - -0.8 328,170 - -0.2 328,170 - -0.5 328,171 + -0.3 328,178 - +0.6 328,237 + MIT1002_00303 0.11 +0.0 328,296 + MIT1002_00303 0.14 -0.5 328,297 + MIT1002_00303 0.14 +0.5 328,297 + MIT1002_00303 0.14 +0.3 328,297 + MIT1002_00303 0.14 -0.1 328,301 + MIT1002_00303 0.14 +1.1 328,305 - MIT1002_00303 0.15 -1.0 328,305 - MIT1002_00303 0.15 +0.2 328,305 - MIT1002_00303 0.15 -0.0 328,305 - MIT1002_00303 0.15 -0.0 328,445 - MIT1002_00303 0.23 +1.3 328,449 + MIT1002_00303 0.23 +0.4 328,449 + MIT1002_00303 0.23 -0.0 328,457 - MIT1002_00303 0.23 +0.9 328,457 - MIT1002_00303 0.23 -0.1 328,457 - MIT1002_00303 0.23 -0.4 328,462 - MIT1002_00303 0.24 +0.6 328,472 + MIT1002_00303 0.24 +0.3 328,472 + MIT1002_00303 0.24 -0.8 328,497 + MIT1002_00303 0.26 +0.0 328,541 - MIT1002_00303 0.28 +0.8 328,541 - MIT1002_00303 0.28 +0.8 328,555 - MIT1002_00303 0.29 -0.4 328,582 + MIT1002_00303 0.30 -0.5 328,666 - MIT1002_00303 0.35 -1.0 328,692 + MIT1002_00303 0.37 -0.9 328,742 + MIT1002_00303 0.40 +1.1 328,750 - MIT1002_00303 0.40 +0.9 328,772 + MIT1002_00303 0.41 +0.2 328,772 + MIT1002_00303 0.41 +0.3 328,772 + MIT1002_00303 0.41 -1.9 328,772 + MIT1002_00303 0.41 +0.2 328,772 + MIT1002_00303 0.41 -0.0 328,772 + MIT1002_00303 0.41 -0.8 328,772 + MIT1002_00303 0.41 -0.3 328,775 - MIT1002_00303 0.41 -0.3 328,780 - MIT1002_00303 0.42 +0.6 328,780 - MIT1002_00303 0.42 -0.5 328,780 - MIT1002_00303 0.42 +0.8 328,780 - MIT1002_00303 0.42 -0.0 328,780 - MIT1002_00303 0.42 -1.6 328,830 - MIT1002_00303 0.45 -1.5 328,838 + MIT1002_00303 0.45 -0.9 328,838 + MIT1002_00303 0.45 +1.1 328,852 - MIT1002_00303 0.46 -1.1
Or see this region's nucleotide sequence