Experiment: monoculture; Experiment A, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00200 and MIT1002_00201 are separated by 107 nucleotides MIT1002_00201 and MIT1002_00202 are separated by 135 nucleotides MIT1002_00202 and MIT1002_00203 are separated by 166 nucleotides
MIT1002_00200: MIT1002_00200 - Aerobic glycerol-3-phosphate dehydrogenase, at 223,519 to 225,066
_00200
MIT1002_00201: MIT1002_00201 - hypothetical protein, at 225,174 to 225,758
_00201
MIT1002_00202: MIT1002_00202 - hypothetical protein, at 225,894 to 226,397
_00202
MIT1002_00203: MIT1002_00203 - hypothetical protein, at 226,564 to 227,478
_00203
Position (kb) 225
226 Strain fitness (log2 ratio) -2
-1
0
1
2 at 225.049 kb on + strand at 225.090 kb on - strand at 225.090 kb on - strand at 225.153 kb on + strand at 225.153 kb on + strand at 225.161 kb on - strand at 225.244 kb on - strand, within MIT1002_00201 at 225.296 kb on - strand, within MIT1002_00201 at 225.343 kb on + strand, within MIT1002_00201 at 225.385 kb on + strand, within MIT1002_00201 at 225.410 kb on - strand, within MIT1002_00201 at 225.432 kb on + strand, within MIT1002_00201 at 225.483 kb on + strand, within MIT1002_00201 at 225.501 kb on - strand, within MIT1002_00201 at 225.507 kb on + strand, within MIT1002_00201 at 225.507 kb on + strand, within MIT1002_00201 at 225.510 kb on - strand, within MIT1002_00201 at 225.514 kb on + strand, within MIT1002_00201 at 225.515 kb on - strand, within MIT1002_00201 at 225.515 kb on - strand, within MIT1002_00201 at 225.543 kb on - strand, within MIT1002_00201 at 225.578 kb on + strand, within MIT1002_00201 at 225.596 kb on - strand, within MIT1002_00201 at 225.633 kb on + strand, within MIT1002_00201 at 225.636 kb on - strand, within MIT1002_00201 at 225.659 kb on + strand, within MIT1002_00201 at 225.904 kb on - strand at 225.944 kb on + strand at 225.978 kb on - strand, within MIT1002_00202 at 225.978 kb on - strand, within MIT1002_00202 at 226.126 kb on + strand, within MIT1002_00202 at 226.165 kb on + strand, within MIT1002_00202 at 226.189 kb on + strand, within MIT1002_00202 at 226.203 kb on + strand, within MIT1002_00202 at 226.242 kb on + strand, within MIT1002_00202 at 226.261 kb on + strand, within MIT1002_00202 at 226.269 kb on - strand, within MIT1002_00202 at 226.280 kb on + strand, within MIT1002_00202 at 226.280 kb on + strand, within MIT1002_00202 at 226.559 kb on - strand at 226.618 kb on + strand at 226.638 kb on + strand at 226.659 kb on + strand, within MIT1002_00203 at 226.744 kb on + strand, within MIT1002_00203
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1 remove 225,049 + -1.3 225,090 - -0.3 225,090 - -0.8 225,153 + +0.4 225,153 + +0.5 225,161 - -0.6 225,244 - MIT1002_00201 0.12 -0.8 225,296 - MIT1002_00201 0.21 +0.2 225,343 + MIT1002_00201 0.29 -2.0 225,385 + MIT1002_00201 0.36 -0.5 225,410 - MIT1002_00201 0.40 -0.3 225,432 + MIT1002_00201 0.44 +0.1 225,483 + MIT1002_00201 0.53 +0.2 225,501 - MIT1002_00201 0.56 +0.3 225,507 + MIT1002_00201 0.57 +0.5 225,507 + MIT1002_00201 0.57 +0.1 225,510 - MIT1002_00201 0.57 -0.2 225,514 + MIT1002_00201 0.58 +0.4 225,515 - MIT1002_00201 0.58 +0.6 225,515 - MIT1002_00201 0.58 -2.2 225,543 - MIT1002_00201 0.63 -1.9 225,578 + MIT1002_00201 0.69 -0.3 225,596 - MIT1002_00201 0.72 -0.2 225,633 + MIT1002_00201 0.78 -0.3 225,636 - MIT1002_00201 0.79 +0.1 225,659 + MIT1002_00201 0.83 -1.5 225,904 - -1.3 225,944 + -0.3 225,978 - MIT1002_00202 0.17 +0.3 225,978 - MIT1002_00202 0.17 +0.2 226,126 + MIT1002_00202 0.46 -0.8 226,165 + MIT1002_00202 0.54 -1.2 226,189 + MIT1002_00202 0.59 +0.4 226,203 + MIT1002_00202 0.61 +1.8 226,242 + MIT1002_00202 0.69 +0.8 226,261 + MIT1002_00202 0.73 +1.0 226,269 - MIT1002_00202 0.74 -0.1 226,280 + MIT1002_00202 0.77 -0.8 226,280 + MIT1002_00202 0.77 -0.4 226,559 - +0.4 226,618 + -0.5 226,638 + -0.4 226,659 + MIT1002_00203 0.10 +0.1 226,744 + MIT1002_00203 0.20 +0.4
Or see this region's nucleotide sequence