Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00141

Experiment: monoculture; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00139 and MIT1002_00140 are separated by 122 nucleotidesMIT1002_00140 and MIT1002_00141 are separated by 63 nucleotidesMIT1002_00141 and MIT1002_00142 are separated by 173 nucleotides MIT1002_00139: MIT1002_00139 - glutaredoxin 3, at 151,176 to 151,916 _00139 MIT1002_00140: MIT1002_00140 - hypothetical protein, at 152,039 to 152,530 _00140 MIT1002_00141: MIT1002_00141 - hypothetical protein, at 152,594 to 154,075 _00141 MIT1002_00142: MIT1002_00142 - Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase), at 154,249 to 155,121 _00142 Position (kb) 152 153 154 155Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 151.618 kb on - strand, within MIT1002_00139at 151.646 kb on + strand, within MIT1002_00139at 151.672 kb on - strand, within MIT1002_00139at 151.738 kb on - strand, within MIT1002_00139at 151.817 kb on - strand, within MIT1002_00139at 151.817 kb on - strand, within MIT1002_00139at 151.819 kb on - strand, within MIT1002_00139at 151.874 kb on + strandat 151.874 kb on + strandat 151.877 kb on - strandat 151.893 kb on + strandat 151.903 kb on - strandat 151.906 kb on + strandat 151.927 kb on + strandat 152.035 kb on + strandat 152.043 kb on - strandat 152.043 kb on - strandat 152.043 kb on - strandat 152.064 kb on + strandat 152.090 kb on - strand, within MIT1002_00140at 152.095 kb on + strand, within MIT1002_00140at 152.100 kb on + strand, within MIT1002_00140at 152.100 kb on - strand, within MIT1002_00140at 152.152 kb on - strand, within MIT1002_00140at 152.164 kb on + strand, within MIT1002_00140at 152.172 kb on - strand, within MIT1002_00140at 152.172 kb on - strand, within MIT1002_00140at 152.207 kb on + strand, within MIT1002_00140at 152.236 kb on + strand, within MIT1002_00140at 152.264 kb on + strand, within MIT1002_00140at 152.337 kb on + strand, within MIT1002_00140at 152.345 kb on - strand, within MIT1002_00140at 152.451 kb on - strand, within MIT1002_00140at 152.492 kb on - strandat 152.517 kb on + strandat 152.592 kb on + strandat 152.621 kb on + strandat 152.656 kb on - strandat 152.738 kb on - strandat 152.738 kb on - strandat 152.856 kb on - strand, within MIT1002_00141at 152.867 kb on - strand, within MIT1002_00141at 152.934 kb on - strand, within MIT1002_00141at 153.014 kb on - strand, within MIT1002_00141at 153.016 kb on + strand, within MIT1002_00141at 153.073 kb on + strand, within MIT1002_00141at 153.135 kb on + strand, within MIT1002_00141at 153.154 kb on + strand, within MIT1002_00141at 153.175 kb on - strand, within MIT1002_00141at 153.183 kb on - strand, within MIT1002_00141at 153.210 kb on + strand, within MIT1002_00141at 153.220 kb on + strand, within MIT1002_00141at 153.232 kb on + strand, within MIT1002_00141at 153.237 kb on + strand, within MIT1002_00141at 153.267 kb on - strand, within MIT1002_00141at 153.273 kb on + strand, within MIT1002_00141at 153.319 kb on - strand, within MIT1002_00141at 153.400 kb on - strand, within MIT1002_00141at 153.438 kb on + strand, within MIT1002_00141at 153.458 kb on - strand, within MIT1002_00141at 153.521 kb on - strand, within MIT1002_00141at 153.521 kb on - strand, within MIT1002_00141at 153.541 kb on + strand, within MIT1002_00141at 153.554 kb on - strand, within MIT1002_00141at 153.733 kb on - strand, within MIT1002_00141at 153.772 kb on + strand, within MIT1002_00141at 153.853 kb on - strand, within MIT1002_00141at 153.865 kb on + strand, within MIT1002_00141at 153.865 kb on + strand, within MIT1002_00141at 153.873 kb on + strand, within MIT1002_00141at 153.893 kb on + strand, within MIT1002_00141at 154.032 kb on - strandat 154.081 kb on + strandat 154.134 kb on - strandat 154.190 kb on - strandat 154.335 kb on + strandat 154.353 kb on - strand, within MIT1002_00142at 154.388 kb on + strand, within MIT1002_00142at 154.407 kb on + strand, within MIT1002_00142at 154.412 kb on + strand, within MIT1002_00142at 154.412 kb on + strand, within MIT1002_00142at 154.420 kb on - strand, within MIT1002_00142at 154.420 kb on - strand, within MIT1002_00142at 154.450 kb on - strand, within MIT1002_00142at 154.477 kb on + strand, within MIT1002_00142at 154.502 kb on + strand, within MIT1002_00142at 154.510 kb on - strand, within MIT1002_00142at 154.548 kb on + strand, within MIT1002_00142at 154.548 kb on + strand, within MIT1002_00142at 154.548 kb on + strand, within MIT1002_00142at 154.556 kb on - strand, within MIT1002_00142at 154.556 kb on - strand, within MIT1002_00142at 154.556 kb on - strand, within MIT1002_00142at 154.576 kb on + strand, within MIT1002_00142at 154.647 kb on + strand, within MIT1002_00142at 154.647 kb on + strand, within MIT1002_00142at 154.652 kb on + strand, within MIT1002_00142at 154.652 kb on + strand, within MIT1002_00142at 154.660 kb on - strand, within MIT1002_00142at 154.744 kb on - strand, within MIT1002_00142at 154.744 kb on - strand, within MIT1002_00142at 154.768 kb on + strand, within MIT1002_00142at 154.776 kb on - strand, within MIT1002_00142at 154.976 kb on - strand, within MIT1002_00142at 154.981 kb on - strand, within MIT1002_00142at 154.993 kb on + strand, within MIT1002_00142at 154.998 kb on + strand, within MIT1002_00142at 155.001 kb on - strand, within MIT1002_00142at 155.006 kb on - strand, within MIT1002_00142

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
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151,618 - MIT1002_00139 0.60 +0.5
151,646 + MIT1002_00139 0.63 +0.1
151,672 - MIT1002_00139 0.67 -1.2
151,738 - MIT1002_00139 0.76 -0.1
151,817 - MIT1002_00139 0.87 -1.5
151,817 - MIT1002_00139 0.87 -0.2
151,819 - MIT1002_00139 0.87 -3.5
151,874 + -1.8
151,874 + +0.2
151,877 - -0.1
151,893 + +0.9
151,903 - +0.5
151,906 + +0.2
151,927 + -0.3
152,035 + -0.2
152,043 - -0.8
152,043 - -1.3
152,043 - +0.4
152,064 + -0.6
152,090 - MIT1002_00140 0.10 +1.1
152,095 + MIT1002_00140 0.11 +1.1
152,100 + MIT1002_00140 0.12 +0.4
152,100 - MIT1002_00140 0.12 +0.5
152,152 - MIT1002_00140 0.23 +0.4
152,164 + MIT1002_00140 0.25 -0.0
152,172 - MIT1002_00140 0.27 -1.1
152,172 - MIT1002_00140 0.27 +0.7
152,207 + MIT1002_00140 0.34 +0.2
152,236 + MIT1002_00140 0.40 +0.5
152,264 + MIT1002_00140 0.46 +0.2
152,337 + MIT1002_00140 0.61 +0.2
152,345 - MIT1002_00140 0.62 -0.4
152,451 - MIT1002_00140 0.84 +0.0
152,492 - +1.6
152,517 + +0.3
152,592 + +1.0
152,621 + -0.6
152,656 - -1.2
152,738 - +0.1
152,738 - +0.2
152,856 - MIT1002_00141 0.18 -1.8
152,867 - MIT1002_00141 0.18 +1.1
152,934 - MIT1002_00141 0.23 -0.2
153,014 - MIT1002_00141 0.28 -0.2
153,016 + MIT1002_00141 0.28 +0.1
153,073 + MIT1002_00141 0.32 +0.8
153,135 + MIT1002_00141 0.37 -0.8
153,154 + MIT1002_00141 0.38 +1.1
153,175 - MIT1002_00141 0.39 +1.0
153,183 - MIT1002_00141 0.40 +1.1
153,210 + MIT1002_00141 0.42 -0.6
153,220 + MIT1002_00141 0.42 -0.6
153,232 + MIT1002_00141 0.43 +0.2
153,237 + MIT1002_00141 0.43 +0.3
153,267 - MIT1002_00141 0.45 -0.0
153,273 + MIT1002_00141 0.46 +1.8
153,319 - MIT1002_00141 0.49 +1.4
153,400 - MIT1002_00141 0.54 -0.4
153,438 + MIT1002_00141 0.57 +0.4
153,458 - MIT1002_00141 0.58 -0.7
153,521 - MIT1002_00141 0.63 -0.3
153,521 - MIT1002_00141 0.63 +0.9
153,541 + MIT1002_00141 0.64 -0.0
153,554 - MIT1002_00141 0.65 +0.7
153,733 - MIT1002_00141 0.77 +0.9
153,772 + MIT1002_00141 0.79 -2.6
153,853 - MIT1002_00141 0.85 -0.4
153,865 + MIT1002_00141 0.86 +0.5
153,865 + MIT1002_00141 0.86 -0.6
153,873 + MIT1002_00141 0.86 +1.0
153,893 + MIT1002_00141 0.88 +0.4
154,032 - +0.1
154,081 + -0.1
154,134 - +1.4
154,190 - +0.7
154,335 + +1.3
154,353 - MIT1002_00142 0.12 +0.4
154,388 + MIT1002_00142 0.16 +1.2
154,407 + MIT1002_00142 0.18 +1.1
154,412 + MIT1002_00142 0.19 -1.9
154,412 + MIT1002_00142 0.19 +1.1
154,420 - MIT1002_00142 0.20 -0.8
154,420 - MIT1002_00142 0.20 +0.1
154,450 - MIT1002_00142 0.23 +0.5
154,477 + MIT1002_00142 0.26 +0.6
154,502 + MIT1002_00142 0.29 +0.8
154,510 - MIT1002_00142 0.30 +1.4
154,548 + MIT1002_00142 0.34 +0.1
154,548 + MIT1002_00142 0.34 -0.8
154,548 + MIT1002_00142 0.34 -3.1
154,556 - MIT1002_00142 0.35 +0.4
154,556 - MIT1002_00142 0.35 -0.8
154,556 - MIT1002_00142 0.35 +0.0
154,576 + MIT1002_00142 0.37 +0.5
154,647 + MIT1002_00142 0.46 -0.3
154,647 + MIT1002_00142 0.46 +0.4
154,652 + MIT1002_00142 0.46 +0.2
154,652 + MIT1002_00142 0.46 +0.4
154,660 - MIT1002_00142 0.47 +0.5
154,744 - MIT1002_00142 0.57 -0.6
154,744 - MIT1002_00142 0.57 +1.1
154,768 + MIT1002_00142 0.59 +0.6
154,776 - MIT1002_00142 0.60 -0.8
154,976 - MIT1002_00142 0.83 +0.9
154,981 - MIT1002_00142 0.84 -0.4
154,993 + MIT1002_00142 0.85 +0.5
154,998 + MIT1002_00142 0.86 -0.4
155,001 - MIT1002_00142 0.86 +0.1
155,006 - MIT1002_00142 0.87 +0.3

Or see this region's nucleotide sequence