Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00096

Experiment: monoculture; Experiment A, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00093 and MIT1002_00094 are separated by 1 nucleotidesMIT1002_00094 and MIT1002_00095 overlap by 4 nucleotidesMIT1002_00095 and MIT1002_00096 overlap by 8 nucleotidesMIT1002_00096 and MIT1002_00097 overlap by 4 nucleotides MIT1002_00093: MIT1002_00093 - Thiazole synthase, at 101,223 to 101,993 _00093 MIT1002_00094: MIT1002_00094 - sulfur carrier protein ThiS, at 101,995 to 102,204 _00094 MIT1002_00095: MIT1002_00095 - Molybdopterin-synthase adenylyltransferase, at 102,201 to 102,995 _00095 MIT1002_00096: MIT1002_00096 - Thiamine-phosphate synthase, at 102,988 to 104,589 _00096 MIT1002_00097: MIT1002_00097 - Phosphomethylpyrimidine synthase, at 104,586 to 106,496 _00097 Position (kb) 102 103 104 105Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 102.083 kb on - strand, within MIT1002_00094at 102.255 kb on + strandat 102.255 kb on + strandat 102.255 kb on + strandat 102.263 kb on + strandat 102.263 kb on - strandat 102.263 kb on - strandat 102.265 kb on + strandat 102.284 kb on + strand, within MIT1002_00095at 102.330 kb on + strand, within MIT1002_00095at 102.330 kb on + strand, within MIT1002_00095at 102.330 kb on + strand, within MIT1002_00095at 102.338 kb on - strand, within MIT1002_00095at 102.338 kb on - strand, within MIT1002_00095at 102.360 kb on + strand, within MIT1002_00095at 102.360 kb on + strand, within MIT1002_00095at 102.360 kb on + strand, within MIT1002_00095at 102.375 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.473 kb on - strand, within MIT1002_00095at 102.473 kb on - strand, within MIT1002_00095at 102.512 kb on + strand, within MIT1002_00095at 102.556 kb on + strand, within MIT1002_00095at 102.562 kb on - strand, within MIT1002_00095at 102.568 kb on + strand, within MIT1002_00095at 102.568 kb on + strand, within MIT1002_00095at 102.576 kb on - strand, within MIT1002_00095at 102.581 kb on - strand, within MIT1002_00095at 102.674 kb on + strand, within MIT1002_00095at 102.677 kb on - strand, within MIT1002_00095at 102.682 kb on - strand, within MIT1002_00095at 102.719 kb on + strand, within MIT1002_00095at 102.776 kb on + strand, within MIT1002_00095at 102.784 kb on - strand, within MIT1002_00095at 102.786 kb on + strand, within MIT1002_00095at 102.799 kb on - strand, within MIT1002_00095at 102.863 kb on - strand, within MIT1002_00095at 102.868 kb on + strand, within MIT1002_00095at 102.868 kb on + strand, within MIT1002_00095at 102.876 kb on - strand, within MIT1002_00095at 102.882 kb on + strand, within MIT1002_00095at 102.882 kb on + strand, within MIT1002_00095at 102.974 kb on - strandat 102.998 kb on - strandat 103.043 kb on - strandat 103.058 kb on - strandat 103.060 kb on + strandat 103.133 kb on + strandat 103.176 kb on + strand, within MIT1002_00096at 103.192 kb on + strand, within MIT1002_00096at 103.192 kb on - strand, within MIT1002_00096at 103.192 kb on - strand, within MIT1002_00096at 103.225 kb on + strand, within MIT1002_00096at 103.236 kb on + strand, within MIT1002_00096at 103.244 kb on - strand, within MIT1002_00096at 103.251 kb on + strand, within MIT1002_00096at 103.259 kb on - strand, within MIT1002_00096at 103.259 kb on - strand, within MIT1002_00096at 103.328 kb on + strand, within MIT1002_00096at 103.388 kb on + strand, within MIT1002_00096at 103.406 kb on - strand, within MIT1002_00096at 103.437 kb on + strand, within MIT1002_00096at 103.454 kb on - strand, within MIT1002_00096at 103.493 kb on + strand, within MIT1002_00096at 103.499 kb on + strand, within MIT1002_00096at 103.547 kb on - strand, within MIT1002_00096at 103.558 kb on + strand, within MIT1002_00096at 103.558 kb on + strand, within MIT1002_00096at 103.558 kb on + strand, within MIT1002_00096at 103.564 kb on - strand, within MIT1002_00096at 103.566 kb on - strand, within MIT1002_00096at 103.566 kb on - strand, within MIT1002_00096at 103.571 kb on - strand, within MIT1002_00096at 103.578 kb on - strand, within MIT1002_00096at 103.578 kb on - strand, within MIT1002_00096at 103.604 kb on - strand, within MIT1002_00096at 103.683 kb on + strand, within MIT1002_00096at 103.691 kb on - strand, within MIT1002_00096at 103.698 kb on + strand, within MIT1002_00096at 103.713 kb on - strand, within MIT1002_00096at 103.735 kb on - strand, within MIT1002_00096at 103.745 kb on - strand, within MIT1002_00096at 103.803 kb on + strand, within MIT1002_00096at 103.811 kb on - strand, within MIT1002_00096at 103.818 kb on - strand, within MIT1002_00096at 103.850 kb on - strand, within MIT1002_00096at 103.850 kb on - strand, within MIT1002_00096at 103.850 kb on - strand, within MIT1002_00096at 103.897 kb on + strand, within MIT1002_00096at 103.897 kb on + strand, within MIT1002_00096at 103.897 kb on + strand, within MIT1002_00096at 103.897 kb on + strand, within MIT1002_00096at 103.897 kb on + strand, within MIT1002_00096at 103.903 kb on + strand, within MIT1002_00096at 103.903 kb on + strand, within MIT1002_00096at 103.905 kb on - strand, within MIT1002_00096at 103.905 kb on - strand, within MIT1002_00096at 103.911 kb on - strand, within MIT1002_00096at 103.961 kb on - strand, within MIT1002_00096at 104.043 kb on - strand, within MIT1002_00096at 104.050 kb on - strand, within MIT1002_00096at 104.120 kb on - strand, within MIT1002_00096at 104.224 kb on + strand, within MIT1002_00096at 104.224 kb on + strand, within MIT1002_00096at 104.225 kb on - strand, within MIT1002_00096at 104.225 kb on - strand, within MIT1002_00096at 104.273 kb on + strand, within MIT1002_00096at 104.275 kb on + strand, within MIT1002_00096at 104.418 kb on + strand, within MIT1002_00096at 104.418 kb on - strand, within MIT1002_00096at 104.424 kb on + strand, within MIT1002_00096at 104.424 kb on + strand, within MIT1002_00096at 104.424 kb on + strand, within MIT1002_00096at 104.424 kb on + strand, within MIT1002_00096at 104.424 kb on + strand, within MIT1002_00096at 104.424 kb on + strand, within MIT1002_00096at 104.430 kb on - strandat 104.432 kb on - strandat 104.432 kb on - strandat 104.443 kb on + strandat 104.474 kb on - strandat 104.506 kb on - strandat 104.513 kb on - strandat 104.543 kb on + strandat 104.551 kb on - strandat 104.554 kb on + strandat 104.572 kb on - strandat 104.593 kb on + strandat 104.604 kb on + strandat 104.624 kb on + strandat 104.624 kb on + strandat 104.629 kb on + strandat 104.629 kb on + strandat 104.637 kb on - strandat 104.786 kb on - strand, within MIT1002_00097at 104.833 kb on - strand, within MIT1002_00097at 104.835 kb on - strand, within MIT1002_00097at 104.845 kb on + strand, within MIT1002_00097at 104.964 kb on + strand, within MIT1002_00097at 105.009 kb on + strand, within MIT1002_00097at 105.017 kb on + strand, within MIT1002_00097at 105.017 kb on + strand, within MIT1002_00097at 105.017 kb on + strand, within MIT1002_00097at 105.017 kb on + strand, within MIT1002_00097at 105.017 kb on - strand, within MIT1002_00097at 105.020 kb on + strand, within MIT1002_00097at 105.025 kb on - strand, within MIT1002_00097at 105.025 kb on - strand, within MIT1002_00097at 105.035 kb on - strand, within MIT1002_00097at 105.050 kb on - strand, within MIT1002_00097at 105.053 kb on - strand, within MIT1002_00097at 105.066 kb on + strand, within MIT1002_00097at 105.067 kb on - strand, within MIT1002_00097at 105.074 kb on - strand, within MIT1002_00097at 105.119 kb on + strand, within MIT1002_00097at 105.119 kb on + strand, within MIT1002_00097at 105.127 kb on + strand, within MIT1002_00097at 105.151 kb on + strand, within MIT1002_00097at 105.229 kb on + strand, within MIT1002_00097at 105.265 kb on - strand, within MIT1002_00097at 105.292 kb on + strand, within MIT1002_00097at 105.295 kb on - strand, within MIT1002_00097at 105.316 kb on + strand, within MIT1002_00097at 105.331 kb on - strand, within MIT1002_00097at 105.331 kb on - strand, within MIT1002_00097at 105.366 kb on - strand, within MIT1002_00097at 105.399 kb on + strand, within MIT1002_00097at 105.413 kb on + strand, within MIT1002_00097at 105.478 kb on - strand, within MIT1002_00097at 105.483 kb on - strand, within MIT1002_00097at 105.490 kb on - strand, within MIT1002_00097at 105.490 kb on - strand, within MIT1002_00097at 105.490 kb on - strand, within MIT1002_00097at 105.524 kb on + strand, within MIT1002_00097at 105.532 kb on - strand, within MIT1002_00097at 105.533 kb on - strand, within MIT1002_00097at 105.533 kb on - strand, within MIT1002_00097at 105.534 kb on + strand, within MIT1002_00097at 105.536 kb on + strand, within MIT1002_00097at 105.548 kb on + strand, within MIT1002_00097

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment A, time point 1
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102,083 - MIT1002_00094 0.42 -3.6
102,255 + -2.2
102,255 + -1.2
102,255 + -2.6
102,263 + -3.4
102,263 - -4.0
102,263 - -1.6
102,265 + -1.2
102,284 + MIT1002_00095 0.10 +1.0
102,330 + MIT1002_00095 0.16 -2.8
102,330 + MIT1002_00095 0.16 -1.6
102,330 + MIT1002_00095 0.16 -4.7
102,338 - MIT1002_00095 0.17 -1.6
102,338 - MIT1002_00095 0.17 -2.7
102,360 + MIT1002_00095 0.20 -3.6
102,360 + MIT1002_00095 0.20 -3.9
102,360 + MIT1002_00095 0.20 -0.6
102,375 + MIT1002_00095 0.22 -3.4
102,465 + MIT1002_00095 0.33 -3.6
102,465 + MIT1002_00095 0.33 -2.6
102,465 + MIT1002_00095 0.33 -2.9
102,465 + MIT1002_00095 0.33 -2.9
102,465 + MIT1002_00095 0.33 -3.1
102,473 - MIT1002_00095 0.34 -0.9
102,473 - MIT1002_00095 0.34 -2.5
102,512 + MIT1002_00095 0.39 -3.4
102,556 + MIT1002_00095 0.45 -3.1
102,562 - MIT1002_00095 0.45 -2.0
102,568 + MIT1002_00095 0.46 -2.5
102,568 + MIT1002_00095 0.46 -3.0
102,576 - MIT1002_00095 0.47 -2.0
102,581 - MIT1002_00095 0.48 -4.0
102,674 + MIT1002_00095 0.59 -2.7
102,677 - MIT1002_00095 0.60 -2.9
102,682 - MIT1002_00095 0.61 -2.0
102,719 + MIT1002_00095 0.65 -1.0
102,776 + MIT1002_00095 0.72 -2.2
102,784 - MIT1002_00095 0.73 -3.4
102,786 + MIT1002_00095 0.74 -3.7
102,799 - MIT1002_00095 0.75 -3.6
102,863 - MIT1002_00095 0.83 -1.3
102,868 + MIT1002_00095 0.84 -2.6
102,868 + MIT1002_00095 0.84 -1.9
102,876 - MIT1002_00095 0.85 -3.7
102,882 + MIT1002_00095 0.86 -2.1
102,882 + MIT1002_00095 0.86 -2.0
102,974 - -2.6
102,998 - -3.7
103,043 - -0.0
103,058 - -3.2
103,060 + -4.9
103,133 + -2.5
103,176 + MIT1002_00096 0.12 -2.2
103,192 + MIT1002_00096 0.13 -3.3
103,192 - MIT1002_00096 0.13 -3.4
103,192 - MIT1002_00096 0.13 -0.6
103,225 + MIT1002_00096 0.15 -2.5
103,236 + MIT1002_00096 0.15 -2.3
103,244 - MIT1002_00096 0.16 -1.0
103,251 + MIT1002_00096 0.16 -1.7
103,259 - MIT1002_00096 0.17 -3.8
103,259 - MIT1002_00096 0.17 -1.5
103,328 + MIT1002_00096 0.21 -0.3
103,388 + MIT1002_00096 0.25 -4.8
103,406 - MIT1002_00096 0.26 -1.9
103,437 + MIT1002_00096 0.28 -4.3
103,454 - MIT1002_00096 0.29 -0.6
103,493 + MIT1002_00096 0.32 -3.7
103,499 + MIT1002_00096 0.32 -1.0
103,547 - MIT1002_00096 0.35 -2.2
103,558 + MIT1002_00096 0.36 -4.0
103,558 + MIT1002_00096 0.36 -4.1
103,558 + MIT1002_00096 0.36 -3.3
103,564 - MIT1002_00096 0.36 -5.3
103,566 - MIT1002_00096 0.36 -3.3
103,566 - MIT1002_00096 0.36 -2.1
103,571 - MIT1002_00096 0.36 -2.0
103,578 - MIT1002_00096 0.37 -1.0
103,578 - MIT1002_00096 0.37 -1.3
103,604 - MIT1002_00096 0.38 -2.7
103,683 + MIT1002_00096 0.43 -3.4
103,691 - MIT1002_00096 0.44 -2.5
103,698 + MIT1002_00096 0.44 -1.3
103,713 - MIT1002_00096 0.45 -2.6
103,735 - MIT1002_00096 0.47 -3.2
103,745 - MIT1002_00096 0.47 -2.9
103,803 + MIT1002_00096 0.51 -2.4
103,811 - MIT1002_00096 0.51 -2.8
103,818 - MIT1002_00096 0.52 -4.0
103,850 - MIT1002_00096 0.54 -0.8
103,850 - MIT1002_00096 0.54 -3.9
103,850 - MIT1002_00096 0.54 -0.5
103,897 + MIT1002_00096 0.57 -2.6
103,897 + MIT1002_00096 0.57 -3.9
103,897 + MIT1002_00096 0.57 -1.9
103,897 + MIT1002_00096 0.57 -2.8
103,897 + MIT1002_00096 0.57 -1.7
103,903 + MIT1002_00096 0.57 -4.0
103,903 + MIT1002_00096 0.57 -2.7
103,905 - MIT1002_00096 0.57 -0.0
103,905 - MIT1002_00096 0.57 -3.0
103,911 - MIT1002_00096 0.58 -0.3
103,961 - MIT1002_00096 0.61 -3.5
104,043 - MIT1002_00096 0.66 -0.6
104,050 - MIT1002_00096 0.66 -2.8
104,120 - MIT1002_00096 0.71 -3.0
104,224 + MIT1002_00096 0.77 -4.2
104,224 + MIT1002_00096 0.77 -2.0
104,225 - MIT1002_00096 0.77 -1.1
104,225 - MIT1002_00096 0.77 -2.6
104,273 + MIT1002_00096 0.80 -3.3
104,275 + MIT1002_00096 0.80 -1.3
104,418 + MIT1002_00096 0.89 -3.0
104,418 - MIT1002_00096 0.89 -3.1
104,424 + MIT1002_00096 0.90 -2.7
104,424 + MIT1002_00096 0.90 -3.6
104,424 + MIT1002_00096 0.90 -0.8
104,424 + MIT1002_00096 0.90 -1.4
104,424 + MIT1002_00096 0.90 -2.3
104,424 + MIT1002_00096 0.90 -3.0
104,430 - -3.0
104,432 - -0.3
104,432 - -3.4
104,443 + -0.8
104,474 - -2.9
104,506 - -2.4
104,513 - -3.2
104,543 + -3.7
104,551 - -3.7
104,554 + -1.7
104,572 - -3.0
104,593 + -3.4
104,604 + -1.1
104,624 + -4.4
104,624 + -2.8
104,629 + -3.1
104,629 + -1.3
104,637 - -2.6
104,786 - MIT1002_00097 0.10 -3.4
104,833 - MIT1002_00097 0.13 -4.3
104,835 - MIT1002_00097 0.13 -1.7
104,845 + MIT1002_00097 0.14 -2.2
104,964 + MIT1002_00097 0.20 -2.4
105,009 + MIT1002_00097 0.22 -2.2
105,017 + MIT1002_00097 0.23 -2.4
105,017 + MIT1002_00097 0.23 -2.4
105,017 + MIT1002_00097 0.23 -2.6
105,017 + MIT1002_00097 0.23 -3.5
105,017 - MIT1002_00097 0.23 -4.4
105,020 + MIT1002_00097 0.23 -2.4
105,025 - MIT1002_00097 0.23 -1.6
105,025 - MIT1002_00097 0.23 -3.0
105,035 - MIT1002_00097 0.23 -2.4
105,050 - MIT1002_00097 0.24 -2.9
105,053 - MIT1002_00097 0.24 -2.2
105,066 + MIT1002_00097 0.25 -0.0
105,067 - MIT1002_00097 0.25 -3.5
105,074 - MIT1002_00097 0.26 -4.4
105,119 + MIT1002_00097 0.28 -4.3
105,119 + MIT1002_00097 0.28 -2.3
105,127 + MIT1002_00097 0.28 -0.0
105,151 + MIT1002_00097 0.30 -1.3
105,229 + MIT1002_00097 0.34 -4.5
105,265 - MIT1002_00097 0.36 -3.4
105,292 + MIT1002_00097 0.37 -1.5
105,295 - MIT1002_00097 0.37 -2.8
105,316 + MIT1002_00097 0.38 -1.9
105,331 - MIT1002_00097 0.39 -2.3
105,331 - MIT1002_00097 0.39 -1.1
105,366 - MIT1002_00097 0.41 -2.3
105,399 + MIT1002_00097 0.43 -3.5
105,413 + MIT1002_00097 0.43 -2.9
105,478 - MIT1002_00097 0.47 -4.3
105,483 - MIT1002_00097 0.47 -4.0
105,490 - MIT1002_00097 0.47 -2.6
105,490 - MIT1002_00097 0.47 -4.2
105,490 - MIT1002_00097 0.47 -4.2
105,524 + MIT1002_00097 0.49 -1.5
105,532 - MIT1002_00097 0.50 -3.3
105,533 - MIT1002_00097 0.50 -0.3
105,533 - MIT1002_00097 0.50 -1.5
105,534 + MIT1002_00097 0.50 -1.0
105,536 + MIT1002_00097 0.50 -2.1
105,548 + MIT1002_00097 0.50 -4.9

Or see this region's nucleotide sequence