Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS14090 and HMPREF1181_RS14095 are separated by 122 nucleotides HMPREF1181_RS14095 and HMPREF1181_RS14100 are separated by 204 nucleotides HMPREF1181_RS14100 and HMPREF1181_RS14105 are separated by 100 nucleotides HMPREF1181_RS14105 and HMPREF1181_RS14110 are separated by 283 nucleotides
HMPREF1181_RS14090: HMPREF1181_RS14090 - transcriptional repressor, at 343,074 to 343,562
_RS14090
HMPREF1181_RS14095: HMPREF1181_RS14095 - DNA alkylation repair protein, at 343,685 to 344,347
_RS14095
HMPREF1181_RS14100: HMPREF1181_RS14100 - dihydrofolate reductase, at 344,552 to 346,600
_RS14100
HMPREF1181_RS14105: HMPREF1181_RS14105 - AraC family transcriptional regulator, at 346,701 to 347,165
_RS14105
HMPREF1181_RS14110: HMPREF1181_RS14110 - DNA helicase RecQ, at 347,449 to 349,263
_RS14110
Position (kb) 344
345
346
347 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 343.596 kb on + strand at 343.668 kb on - strand at 343.761 kb on - strand, within HMPREF1181_RS14095 at 343.925 kb on + strand, within HMPREF1181_RS14095 at 343.963 kb on + strand, within HMPREF1181_RS14095 at 344.035 kb on + strand, within HMPREF1181_RS14095 at 344.036 kb on - strand, within HMPREF1181_RS14095 at 344.042 kb on - strand, within HMPREF1181_RS14095 at 344.081 kb on + strand, within HMPREF1181_RS14095 at 344.613 kb on + strand at 344.698 kb on + strand at 344.736 kb on - strand at 344.759 kb on + strand, within HMPREF1181_RS14100 at 344.802 kb on + strand, within HMPREF1181_RS14100 at 344.822 kb on - strand, within HMPREF1181_RS14100 at 344.980 kb on + strand, within HMPREF1181_RS14100 at 344.981 kb on - strand, within HMPREF1181_RS14100 at 345.048 kb on + strand, within HMPREF1181_RS14100 at 345.052 kb on + strand, within HMPREF1181_RS14100 at 345.055 kb on - strand, within HMPREF1181_RS14100 at 345.055 kb on - strand, within HMPREF1181_RS14100 at 345.123 kb on + strand, within HMPREF1181_RS14100 at 345.172 kb on - strand, within HMPREF1181_RS14100 at 345.273 kb on + strand, within HMPREF1181_RS14100 at 345.306 kb on + strand, within HMPREF1181_RS14100 at 345.309 kb on - strand, within HMPREF1181_RS14100 at 345.352 kb on - strand, within HMPREF1181_RS14100 at 345.482 kb on + strand, within HMPREF1181_RS14100 at 345.754 kb on - strand, within HMPREF1181_RS14100 at 346.193 kb on - strand, within HMPREF1181_RS14100 at 346.263 kb on + strand, within HMPREF1181_RS14100 at 346.307 kb on - strand, within HMPREF1181_RS14100 at 346.309 kb on + strand, within HMPREF1181_RS14100 at 346.353 kb on + strand, within HMPREF1181_RS14100 at 346.634 kb on - strand at 346.703 kb on - strand at 346.733 kb on - strand at 346.838 kb on - strand, within HMPREF1181_RS14105 at 346.985 kb on - strand, within HMPREF1181_RS14105 at 347.039 kb on - strand, within HMPREF1181_RS14105 at 347.190 kb on - strand at 347.236 kb on - strand at 347.316 kb on + strand at 347.327 kb on - strand at 347.359 kb on - strand at 347.395 kb on + strand at 347.449 kb on - strand at 347.453 kb on + strand at 347.576 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/ml (C) remove 343,596 + -3.0 343,668 - -0.4 343,761 - HMPREF1181_RS14095 0.11 -0.4 343,925 + HMPREF1181_RS14095 0.36 +0.3 343,963 + HMPREF1181_RS14095 0.42 +0.3 344,035 + HMPREF1181_RS14095 0.53 -1.2 344,036 - HMPREF1181_RS14095 0.53 +0.1 344,042 - HMPREF1181_RS14095 0.54 -1.8 344,081 + HMPREF1181_RS14095 0.60 -0.5 344,613 + -0.1 344,698 + +0.5 344,736 - -0.2 344,759 + HMPREF1181_RS14100 0.10 +1.1 344,802 + HMPREF1181_RS14100 0.12 +1.3 344,822 - HMPREF1181_RS14100 0.13 +0.5 344,980 + HMPREF1181_RS14100 0.21 +2.4 344,981 - HMPREF1181_RS14100 0.21 -0.5 345,048 + HMPREF1181_RS14100 0.24 -0.3 345,052 + HMPREF1181_RS14100 0.24 -0.2 345,055 - HMPREF1181_RS14100 0.25 +0.1 345,055 - HMPREF1181_RS14100 0.25 -1.4 345,123 + HMPREF1181_RS14100 0.28 +0.8 345,172 - HMPREF1181_RS14100 0.30 +0.3 345,273 + HMPREF1181_RS14100 0.35 -0.2 345,306 + HMPREF1181_RS14100 0.37 -2.4 345,309 - HMPREF1181_RS14100 0.37 -1.4 345,352 - HMPREF1181_RS14100 0.39 +0.1 345,482 + HMPREF1181_RS14100 0.45 +1.1 345,754 - HMPREF1181_RS14100 0.59 -0.1 346,193 - HMPREF1181_RS14100 0.80 +0.3 346,263 + HMPREF1181_RS14100 0.84 -0.9 346,307 - HMPREF1181_RS14100 0.86 -0.5 346,309 + HMPREF1181_RS14100 0.86 -0.1 346,353 + HMPREF1181_RS14100 0.88 +1.6 346,634 - -0.9 346,703 - -1.0 346,733 - -0.5 346,838 - HMPREF1181_RS14105 0.29 -1.8 346,985 - HMPREF1181_RS14105 0.61 -0.4 347,039 - HMPREF1181_RS14105 0.73 -1.0 347,190 - -0.8 347,236 - -0.4 347,316 + -0.2 347,327 - +0.5 347,359 - +1.1 347,395 + -0.2 347,449 - +1.1 347,453 + +0.3 347,576 + -0.4
Or see this region's nucleotide sequence