Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS00115

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS00110 and HMPREF1181_RS00115 are separated by 298 nucleotidesHMPREF1181_RS00115 and HMPREF1181_RS00120 are separated by 100 nucleotides HMPREF1181_RS00110: HMPREF1181_RS00110 - KilA-N domain-containing protein, at 26,344 to 27,162 _RS00110 HMPREF1181_RS00115: HMPREF1181_RS00115 - fimbrillin family protein, at 27,461 to 29,374 _RS00115 HMPREF1181_RS00120: HMPREF1181_RS00120 - methylenetetrahydrofolate reductase [NAD(P)H], at 29,475 to 30,428 _RS00120 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -1 0 1at 26.526 kb on + strand, within HMPREF1181_RS00110at 26.595 kb on - strand, within HMPREF1181_RS00110at 26.622 kb on + strand, within HMPREF1181_RS00110at 26.668 kb on + strand, within HMPREF1181_RS00110at 26.714 kb on + strand, within HMPREF1181_RS00110at 26.728 kb on + strand, within HMPREF1181_RS00110at 26.823 kb on - strand, within HMPREF1181_RS00110at 26.851 kb on - strand, within HMPREF1181_RS00110at 26.874 kb on - strand, within HMPREF1181_RS00110at 26.997 kb on + strand, within HMPREF1181_RS00110at 26.998 kb on - strand, within HMPREF1181_RS00110at 27.000 kb on + strand, within HMPREF1181_RS00110at 27.045 kb on - strand, within HMPREF1181_RS00110at 27.048 kb on + strand, within HMPREF1181_RS00110at 27.117 kb on + strandat 27.117 kb on + strandat 27.118 kb on - strandat 27.118 kb on - strandat 27.147 kb on + strandat 27.148 kb on - strandat 27.188 kb on - strandat 27.221 kb on + strandat 27.251 kb on + strandat 27.257 kb on + strandat 27.275 kb on + strandat 27.280 kb on - strandat 27.281 kb on + strandat 27.310 kb on - strandat 27.411 kb on - strandat 27.447 kb on - strandat 27.452 kb on + strandat 27.457 kb on + strandat 27.466 kb on + strandat 27.466 kb on + strandat 27.467 kb on - strandat 27.498 kb on - strandat 27.530 kb on - strandat 27.549 kb on + strandat 27.550 kb on - strandat 27.574 kb on + strandat 27.604 kb on + strandat 27.621 kb on + strandat 27.625 kb on + strandat 27.643 kb on - strandat 27.727 kb on + strand, within HMPREF1181_RS00115at 27.764 kb on + strand, within HMPREF1181_RS00115at 27.764 kb on + strand, within HMPREF1181_RS00115at 27.764 kb on + strand, within HMPREF1181_RS00115at 27.765 kb on - strand, within HMPREF1181_RS00115at 27.765 kb on - strand, within HMPREF1181_RS00115at 27.861 kb on + strand, within HMPREF1181_RS00115at 27.890 kb on + strand, within HMPREF1181_RS00115at 27.931 kb on - strand, within HMPREF1181_RS00115at 27.997 kb on + strand, within HMPREF1181_RS00115at 27.997 kb on + strand, within HMPREF1181_RS00115at 27.998 kb on - strand, within HMPREF1181_RS00115at 27.998 kb on - strand, within HMPREF1181_RS00115at 28.053 kb on + strand, within HMPREF1181_RS00115at 28.054 kb on - strand, within HMPREF1181_RS00115at 28.054 kb on - strand, within HMPREF1181_RS00115at 28.080 kb on + strand, within HMPREF1181_RS00115at 28.080 kb on + strand, within HMPREF1181_RS00115at 28.083 kb on - strand, within HMPREF1181_RS00115at 28.171 kb on + strand, within HMPREF1181_RS00115at 28.193 kb on - strand, within HMPREF1181_RS00115at 28.193 kb on - strand, within HMPREF1181_RS00115at 28.462 kb on + strand, within HMPREF1181_RS00115at 28.463 kb on - strand, within HMPREF1181_RS00115at 28.466 kb on + strand, within HMPREF1181_RS00115at 28.474 kb on - strand, within HMPREF1181_RS00115at 28.474 kb on - strand, within HMPREF1181_RS00115at 28.474 kb on - strand, within HMPREF1181_RS00115at 28.475 kb on + strand, within HMPREF1181_RS00115at 28.475 kb on + strand, within HMPREF1181_RS00115at 28.475 kb on + strand, within HMPREF1181_RS00115at 28.476 kb on - strand, within HMPREF1181_RS00115at 28.515 kb on - strand, within HMPREF1181_RS00115at 28.520 kb on + strand, within HMPREF1181_RS00115at 28.550 kb on - strand, within HMPREF1181_RS00115at 28.560 kb on + strand, within HMPREF1181_RS00115at 28.615 kb on - strand, within HMPREF1181_RS00115at 28.688 kb on + strand, within HMPREF1181_RS00115at 28.689 kb on - strand, within HMPREF1181_RS00115at 28.797 kb on - strand, within HMPREF1181_RS00115at 28.810 kb on + strand, within HMPREF1181_RS00115at 28.813 kb on - strand, within HMPREF1181_RS00115at 28.822 kb on + strand, within HMPREF1181_RS00115at 28.823 kb on - strand, within HMPREF1181_RS00115at 28.823 kb on - strand, within HMPREF1181_RS00115at 28.851 kb on + strand, within HMPREF1181_RS00115at 28.897 kb on + strand, within HMPREF1181_RS00115at 28.897 kb on + strand, within HMPREF1181_RS00115at 28.897 kb on + strand, within HMPREF1181_RS00115at 28.898 kb on - strand, within HMPREF1181_RS00115at 29.069 kb on + strand, within HMPREF1181_RS00115at 29.069 kb on + strand, within HMPREF1181_RS00115at 29.073 kb on + strand, within HMPREF1181_RS00115at 29.108 kb on - strand, within HMPREF1181_RS00115at 29.235 kb on + strandat 29.238 kb on - strandat 29.339 kb on + strandat 29.340 kb on - strandat 29.340 kb on - strandat 29.342 kb on - strandat 29.615 kb on + strand, within HMPREF1181_RS00120at 29.793 kb on + strand, within HMPREF1181_RS00120at 29.793 kb on + strand, within HMPREF1181_RS00120at 29.793 kb on + strand, within HMPREF1181_RS00120at 30.054 kb on + strand, within HMPREF1181_RS00120at 30.126 kb on + strand, within HMPREF1181_RS00120at 30.126 kb on + strand, within HMPREF1181_RS00120at 30.241 kb on + strand, within HMPREF1181_RS00120

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
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26,526 + HMPREF1181_RS00110 0.22 -0.5
26,595 - HMPREF1181_RS00110 0.31 -1.3
26,622 + HMPREF1181_RS00110 0.34 +0.5
26,668 + HMPREF1181_RS00110 0.40 -1.0
26,714 + HMPREF1181_RS00110 0.45 +0.8
26,728 + HMPREF1181_RS00110 0.47 -0.7
26,823 - HMPREF1181_RS00110 0.58 +0.4
26,851 - HMPREF1181_RS00110 0.62 +0.5
26,874 - HMPREF1181_RS00110 0.65 -0.5
26,997 + HMPREF1181_RS00110 0.80 +0.6
26,998 - HMPREF1181_RS00110 0.80 +0.2
27,000 + HMPREF1181_RS00110 0.80 +0.3
27,045 - HMPREF1181_RS00110 0.86 -0.3
27,048 + HMPREF1181_RS00110 0.86 -0.0
27,117 + -0.7
27,117 + -0.5
27,118 - +0.1
27,118 - -0.6
27,147 + -0.9
27,148 - +1.3
27,188 - +0.4
27,221 + -0.2
27,251 + -0.3
27,257 + -0.8
27,275 + +0.4
27,280 - -0.1
27,281 + +0.7
27,310 - -0.5
27,411 - -0.2
27,447 - +0.1
27,452 + -1.1
27,457 + +0.1
27,466 + +0.8
27,466 + +0.9
27,467 - +0.5
27,498 - -0.0
27,530 - -0.2
27,549 + -0.7
27,550 - +0.1
27,574 + +1.3
27,604 + +0.4
27,621 + +1.1
27,625 + +0.8
27,643 - -0.3
27,727 + HMPREF1181_RS00115 0.14 -0.3
27,764 + HMPREF1181_RS00115 0.16 -0.3
27,764 + HMPREF1181_RS00115 0.16 -1.5
27,764 + HMPREF1181_RS00115 0.16 +0.4
27,765 - HMPREF1181_RS00115 0.16 +0.0
27,765 - HMPREF1181_RS00115 0.16 -0.3
27,861 + HMPREF1181_RS00115 0.21 -0.3
27,890 + HMPREF1181_RS00115 0.22 +0.0
27,931 - HMPREF1181_RS00115 0.25 -0.5
27,997 + HMPREF1181_RS00115 0.28 +0.3
27,997 + HMPREF1181_RS00115 0.28 +0.6
27,998 - HMPREF1181_RS00115 0.28 -0.4
27,998 - HMPREF1181_RS00115 0.28 -0.1
28,053 + HMPREF1181_RS00115 0.31 -0.1
28,054 - HMPREF1181_RS00115 0.31 +0.5
28,054 - HMPREF1181_RS00115 0.31 -0.1
28,080 + HMPREF1181_RS00115 0.32 +0.4
28,080 + HMPREF1181_RS00115 0.32 +0.1
28,083 - HMPREF1181_RS00115 0.32 -0.1
28,171 + HMPREF1181_RS00115 0.37 -1.0
28,193 - HMPREF1181_RS00115 0.38 -0.7
28,193 - HMPREF1181_RS00115 0.38 +0.0
28,462 + HMPREF1181_RS00115 0.52 +0.8
28,463 - HMPREF1181_RS00115 0.52 -0.3
28,466 + HMPREF1181_RS00115 0.53 +1.3
28,474 - HMPREF1181_RS00115 0.53 -0.4
28,474 - HMPREF1181_RS00115 0.53 +1.0
28,474 - HMPREF1181_RS00115 0.53 +0.0
28,475 + HMPREF1181_RS00115 0.53 -0.5
28,475 + HMPREF1181_RS00115 0.53 +1.7
28,475 + HMPREF1181_RS00115 0.53 +0.5
28,476 - HMPREF1181_RS00115 0.53 -0.3
28,515 - HMPREF1181_RS00115 0.55 -0.7
28,520 + HMPREF1181_RS00115 0.55 -0.7
28,550 - HMPREF1181_RS00115 0.57 -1.5
28,560 + HMPREF1181_RS00115 0.57 +0.1
28,615 - HMPREF1181_RS00115 0.60 -0.4
28,688 + HMPREF1181_RS00115 0.64 -0.0
28,689 - HMPREF1181_RS00115 0.64 -0.6
28,797 - HMPREF1181_RS00115 0.70 +1.2
28,810 + HMPREF1181_RS00115 0.70 +0.7
28,813 - HMPREF1181_RS00115 0.71 -1.7
28,822 + HMPREF1181_RS00115 0.71 -0.2
28,823 - HMPREF1181_RS00115 0.71 +0.2
28,823 - HMPREF1181_RS00115 0.71 +0.2
28,851 + HMPREF1181_RS00115 0.73 -0.3
28,897 + HMPREF1181_RS00115 0.75 +0.6
28,897 + HMPREF1181_RS00115 0.75 -0.4
28,897 + HMPREF1181_RS00115 0.75 +0.2
28,898 - HMPREF1181_RS00115 0.75 -0.6
29,069 + HMPREF1181_RS00115 0.84 +0.4
29,069 + HMPREF1181_RS00115 0.84 -0.7
29,073 + HMPREF1181_RS00115 0.84 +1.3
29,108 - HMPREF1181_RS00115 0.86 +0.4
29,235 + -0.9
29,238 - -0.6
29,339 + -0.5
29,340 - -0.1
29,340 - -0.3
29,342 - -0.3
29,615 + HMPREF1181_RS00120 0.15 -0.3
29,793 + HMPREF1181_RS00120 0.33 +0.3
29,793 + HMPREF1181_RS00120 0.33 -0.1
29,793 + HMPREF1181_RS00120 0.33 +0.2
30,054 + HMPREF1181_RS00120 0.61 -0.3
30,126 + HMPREF1181_RS00120 0.68 -0.9
30,126 + HMPREF1181_RS00120 0.68 -0.4
30,241 + HMPREF1181_RS00120 0.80 -0.4

Or see this region's nucleotide sequence