Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06975

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06974 and MPMX19_06975 are separated by 150 nucleotidesMPMX19_06975 and MPMX19_06976 are separated by 102 nucleotides MPMX19_06974: MPMX19_06974 - 4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2, at 251,587 to 252,339 _06974 MPMX19_06975: MPMX19_06975 - HTH-type transcriptional regulator HdfR, at 252,490 to 253,449 _06975 MPMX19_06976: MPMX19_06976 - (2S)-methylsuccinyl-CoA dehydrogenase, at 253,552 to 255,255 _06976 Position (kb) 252 253 254Strain fitness (log2 ratio) -2 -1 0 1at 251.490 kb on + strandat 251.508 kb on + strandat 251.561 kb on + strandat 251.561 kb on + strandat 251.562 kb on - strandat 251.657 kb on + strandat 251.658 kb on - strandat 251.658 kb on - strandat 251.879 kb on + strand, within MPMX19_06974at 251.880 kb on - strand, within MPMX19_06974at 251.981 kb on + strand, within MPMX19_06974at 251.982 kb on - strand, within MPMX19_06974at 251.982 kb on - strand, within MPMX19_06974at 251.982 kb on - strand, within MPMX19_06974at 251.987 kb on + strand, within MPMX19_06974at 251.987 kb on + strand, within MPMX19_06974at 251.988 kb on - strand, within MPMX19_06974at 251.988 kb on - strand, within MPMX19_06974at 251.988 kb on - strand, within MPMX19_06974at 251.988 kb on - strand, within MPMX19_06974at 251.988 kb on - strand, within MPMX19_06974at 252.384 kb on + strandat 252.385 kb on - strandat 252.478 kb on - strandat 253.010 kb on + strand, within MPMX19_06975at 253.011 kb on - strand, within MPMX19_06975at 253.011 kb on - strand, within MPMX19_06975at 253.100 kb on + strand, within MPMX19_06975at 253.101 kb on - strand, within MPMX19_06975at 253.101 kb on - strand, within MPMX19_06975at 253.101 kb on - strand, within MPMX19_06975at 253.101 kb on - strand, within MPMX19_06975at 253.101 kb on - strand, within MPMX19_06975at 253.256 kb on + strand, within MPMX19_06975at 253.256 kb on + strand, within MPMX19_06975at 253.256 kb on + strand, within MPMX19_06975at 253.257 kb on - strand, within MPMX19_06975at 253.304 kb on + strand, within MPMX19_06975at 253.304 kb on + strand, within MPMX19_06975at 253.304 kb on + strand, within MPMX19_06975at 253.304 kb on + strand, within MPMX19_06975at 253.305 kb on - strand, within MPMX19_06975at 253.305 kb on - strand, within MPMX19_06975at 253.305 kb on - strand, within MPMX19_06975at 253.305 kb on - strand, within MPMX19_06975at 253.305 kb on - strand, within MPMX19_06975at 253.427 kb on + strandat 253.428 kb on - strandat 253.428 kb on - strandat 253.428 kb on - strandat 253.428 kb on - strandat 253.428 kb on - strandat 253.495 kb on - strandat 253.673 kb on + strandat 253.673 kb on + strandat 253.674 kb on - strandat 253.674 kb on - strandat 253.803 kb on - strand, within MPMX19_06976at 253.803 kb on - strand, within MPMX19_06976at 253.803 kb on - strand, within MPMX19_06976at 253.803 kb on - strand, within MPMX19_06976at 253.803 kb on - strand, within MPMX19_06976at 253.910 kb on + strand, within MPMX19_06976at 254.075 kb on + strand, within MPMX19_06976

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
remove
251,490 + +0.3
251,508 + +1.3
251,561 + -1.3
251,561 + -0.9
251,562 - -0.7
251,657 + -0.3
251,658 - -1.3
251,658 - +0.1
251,879 + MPMX19_06974 0.39 -1.1
251,880 - MPMX19_06974 0.39 -0.9
251,981 + MPMX19_06974 0.52 +0.0
251,982 - MPMX19_06974 0.52 +0.1
251,982 - MPMX19_06974 0.52 -0.7
251,982 - MPMX19_06974 0.52 +0.7
251,987 + MPMX19_06974 0.53 -0.3
251,987 + MPMX19_06974 0.53 +0.0
251,988 - MPMX19_06974 0.53 +0.0
251,988 - MPMX19_06974 0.53 -0.2
251,988 - MPMX19_06974 0.53 -1.5
251,988 - MPMX19_06974 0.53 +0.2
251,988 - MPMX19_06974 0.53 -0.8
252,384 + -1.3
252,385 - -0.6
252,478 - +0.5
253,010 + MPMX19_06975 0.54 -0.3
253,011 - MPMX19_06975 0.54 -1.3
253,011 - MPMX19_06975 0.54 -0.5
253,100 + MPMX19_06975 0.64 -0.1
253,101 - MPMX19_06975 0.64 +0.7
253,101 - MPMX19_06975 0.64 +0.4
253,101 - MPMX19_06975 0.64 -2.2
253,101 - MPMX19_06975 0.64 -0.1
253,101 - MPMX19_06975 0.64 +1.2
253,256 + MPMX19_06975 0.80 +0.7
253,256 + MPMX19_06975 0.80 +0.4
253,256 + MPMX19_06975 0.80 -1.3
253,257 - MPMX19_06975 0.80 -2.6
253,304 + MPMX19_06975 0.85 -0.3
253,304 + MPMX19_06975 0.85 -0.1
253,304 + MPMX19_06975 0.85 -1.1
253,304 + MPMX19_06975 0.85 +0.3
253,305 - MPMX19_06975 0.85 +0.1
253,305 - MPMX19_06975 0.85 +0.4
253,305 - MPMX19_06975 0.85 -1.1
253,305 - MPMX19_06975 0.85 -0.1
253,305 - MPMX19_06975 0.85 -0.7
253,427 + +0.7
253,428 - -1.2
253,428 - -0.4
253,428 - -0.3
253,428 - -1.3
253,428 - -1.0
253,495 - +0.3
253,673 + -0.5
253,673 + -0.1
253,674 - -0.6
253,674 - -0.9
253,803 - MPMX19_06976 0.15 -0.8
253,803 - MPMX19_06976 0.15 -0.8
253,803 - MPMX19_06976 0.15 +0.0
253,803 - MPMX19_06976 0.15 -0.1
253,803 - MPMX19_06976 0.15 -0.1
253,910 + MPMX19_06976 0.21 -0.3
254,075 + MPMX19_06976 0.31 +0.3

Or see this region's nucleotide sequence