Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06920 and MPMX19_06921 are separated by 217 nucleotides MPMX19_06921 and MPMX19_06922 overlap by 32 nucleotides MPMX19_06922 and MPMX19_06923 are separated by 29 nucleotides
MPMX19_06920: MPMX19_06920 - Purine ribonucleoside efflux pump NepI, at 195,319 to 196,527
_06920
MPMX19_06921: MPMX19_06921 - hypothetical protein, at 196,745 to 197,320
_06921
MPMX19_06922: MPMX19_06922 - hypothetical protein, at 197,289 to 197,678
_06922
MPMX19_06923: MPMX19_06923 - hypothetical protein, at 197,708 to 198,541
_06923
Position (kb) 196
197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 195.798 kb on + strand, within MPMX19_06920 at 195.799 kb on - strand, within MPMX19_06920 at 195.799 kb on - strand, within MPMX19_06920 at 195.816 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.047 kb on + strand, within MPMX19_06920 at 196.048 kb on - strand, within MPMX19_06920 at 196.213 kb on + strand, within MPMX19_06920 at 196.213 kb on + strand, within MPMX19_06920 at 196.227 kb on + strand, within MPMX19_06920 at 196.227 kb on + strand, within MPMX19_06920 at 196.227 kb on + strand, within MPMX19_06920 at 196.228 kb on - strand, within MPMX19_06920 at 196.228 kb on - strand, within MPMX19_06920 at 196.228 kb on - strand, within MPMX19_06920 at 196.228 kb on - strand, within MPMX19_06920 at 196.525 kb on + strand at 196.525 kb on + strand at 196.526 kb on - strand at 196.526 kb on - strand at 196.526 kb on - strand at 196.612 kb on - strand at 196.691 kb on + strand at 196.692 kb on - strand at 196.692 kb on - strand at 196.692 kb on - strand at 196.714 kb on + strand at 196.714 kb on + strand at 196.714 kb on + strand at 196.714 kb on + strand at 196.762 kb on - strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.853 kb on + strand, within MPMX19_06921 at 196.853 kb on + strand, within MPMX19_06921 at 196.854 kb on - strand, within MPMX19_06921 at 196.854 kb on - strand, within MPMX19_06921 at 196.854 kb on - strand, within MPMX19_06921 at 196.904 kb on + strand, within MPMX19_06921 at 197.051 kb on + strand, within MPMX19_06921 at 197.051 kb on + strand, within MPMX19_06921 at 197.052 kb on - strand, within MPMX19_06921 at 197.127 kb on - strand, within MPMX19_06921 at 197.163 kb on - strand, within MPMX19_06921 at 197.163 kb on - strand, within MPMX19_06921 at 197.163 kb on - strand, within MPMX19_06921 at 197.163 kb on - strand, within MPMX19_06921 at 197.163 kb on - strand, within MPMX19_06921 at 197.163 kb on - strand, within MPMX19_06921 at 197.288 kb on + strand at 197.318 kb on + strand at 197.318 kb on + strand at 197.318 kb on + strand at 197.319 kb on - strand at 197.319 kb on - strand at 197.319 kb on - strand at 197.319 kb on - strand at 197.619 kb on + strand, within MPMX19_06922 at 197.620 kb on - strand, within MPMX19_06922 at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.712 kb on - strand at 197.712 kb on - strand at 197.712 kb on - strand at 197.712 kb on - strand at 197.712 kb on - strand at 198.125 kb on + strand, within MPMX19_06923 at 198.125 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 195,798 + MPMX19_06920 0.40 -0.7 195,799 - MPMX19_06920 0.40 -1.5 195,799 - MPMX19_06920 0.40 +1.4 195,816 + MPMX19_06920 0.41 +0.9 196,000 + MPMX19_06920 0.56 +0.5 196,000 + MPMX19_06920 0.56 -1.3 196,000 + MPMX19_06920 0.56 +0.7 196,000 + MPMX19_06920 0.56 -2.1 196,000 + MPMX19_06920 0.56 +0.3 196,000 + MPMX19_06920 0.56 -1.1 196,000 + MPMX19_06920 0.56 -0.0 196,000 + MPMX19_06920 0.56 -0.7 196,001 - MPMX19_06920 0.56 -0.6 196,001 - MPMX19_06920 0.56 +1.4 196,001 - MPMX19_06920 0.56 -0.7 196,001 - MPMX19_06920 0.56 -1.8 196,001 - MPMX19_06920 0.56 +0.1 196,001 - MPMX19_06920 0.56 -0.0 196,001 - MPMX19_06920 0.56 +0.9 196,001 - MPMX19_06920 0.56 -1.1 196,001 - MPMX19_06920 0.56 -1.3 196,001 - MPMX19_06920 0.56 +1.4 196,001 - MPMX19_06920 0.56 -1.8 196,002 + MPMX19_06920 0.56 +0.8 196,002 + MPMX19_06920 0.56 +1.0 196,002 + MPMX19_06920 0.56 -0.9 196,002 + MPMX19_06920 0.56 -0.9 196,003 - MPMX19_06920 0.57 -1.8 196,003 - MPMX19_06920 0.57 +1.8 196,003 - MPMX19_06920 0.57 -1.1 196,003 - MPMX19_06920 0.57 -0.6 196,003 - MPMX19_06920 0.57 -0.5 196,003 - MPMX19_06920 0.57 -0.1 196,003 - MPMX19_06920 0.57 +0.3 196,003 - MPMX19_06920 0.57 +0.3 196,006 + MPMX19_06920 0.57 +0.4 196,006 + MPMX19_06920 0.57 -1.0 196,006 + MPMX19_06920 0.57 -0.6 196,006 + MPMX19_06920 0.57 -0.1 196,006 + MPMX19_06920 0.57 -1.3 196,006 + MPMX19_06920 0.57 +0.3 196,006 + MPMX19_06920 0.57 -0.4 196,007 - MPMX19_06920 0.57 -0.3 196,007 - MPMX19_06920 0.57 +0.3 196,007 - MPMX19_06920 0.57 +0.1 196,007 - MPMX19_06920 0.57 +0.3 196,007 - MPMX19_06920 0.57 -0.2 196,007 - MPMX19_06920 0.57 +0.1 196,007 - MPMX19_06920 0.57 +0.3 196,047 + MPMX19_06920 0.60 -1.1 196,048 - MPMX19_06920 0.60 -0.3 196,213 + MPMX19_06920 0.74 -0.7 196,213 + MPMX19_06920 0.74 -0.8 196,227 + MPMX19_06920 0.75 +0.4 196,227 + MPMX19_06920 0.75 -0.4 196,227 + MPMX19_06920 0.75 +0.6 196,228 - MPMX19_06920 0.75 -0.4 196,228 - MPMX19_06920 0.75 +0.1 196,228 - MPMX19_06920 0.75 -1.3 196,228 - MPMX19_06920 0.75 +0.9 196,525 + +0.5 196,525 + +0.7 196,526 - -1.9 196,526 - +0.8 196,526 - -1.7 196,612 - +0.6 196,691 + -2.0 196,692 - +0.3 196,692 - +0.0 196,692 - +0.7 196,714 + -1.6 196,714 + -0.7 196,714 + -1.1 196,714 + -0.5 196,762 - +0.4 196,789 + -0.0 196,789 + +0.6 196,789 + +1.1 196,789 + +0.3 196,789 + -1.9 196,789 + -1.3 196,789 + +0.3 196,789 + +0.1 196,789 + -1.3 196,789 + -0.6 196,789 + +0.4 196,790 - -0.3 196,790 - -2.1 196,790 - +0.2 196,790 - -0.9 196,790 - -0.2 196,790 - -0.5 196,790 - -0.1 196,790 - -0.1 196,790 - -0.7 196,853 + MPMX19_06921 0.19 -2.5 196,853 + MPMX19_06921 0.19 +0.5 196,854 - MPMX19_06921 0.19 -1.1 196,854 - MPMX19_06921 0.19 -2.0 196,854 - MPMX19_06921 0.19 +0.4 196,904 + MPMX19_06921 0.28 -1.2 197,051 + MPMX19_06921 0.53 -0.6 197,051 + MPMX19_06921 0.53 -0.3 197,052 - MPMX19_06921 0.53 -1.7 197,127 - MPMX19_06921 0.66 -0.9 197,163 - MPMX19_06921 0.73 -0.3 197,163 - MPMX19_06921 0.73 -1.7 197,163 - MPMX19_06921 0.73 -0.9 197,163 - MPMX19_06921 0.73 -0.7 197,163 - MPMX19_06921 0.73 -3.1 197,163 - MPMX19_06921 0.73 -1.1 197,288 + +0.9 197,318 + -0.6 197,318 + +0.7 197,318 + -0.4 197,319 - -1.5 197,319 - -0.3 197,319 - -2.2 197,319 - +1.3 197,619 + MPMX19_06922 0.85 -0.7 197,620 - MPMX19_06922 0.85 -1.1 197,711 + -0.1 197,711 + +1.3 197,711 + -1.5 197,711 + +0.9 197,711 + -0.8 197,711 + +0.4 197,712 - +1.1 197,712 - -1.0 197,712 - +0.5 197,712 - +0.4 197,712 - +0.1 198,125 + MPMX19_06923 0.50 -1.2 198,125 + MPMX19_06923 0.50 -0.3 198,212 + MPMX19_06923 0.60 -0.1 198,212 + MPMX19_06923 0.60 -2.1 198,212 + MPMX19_06923 0.60 -0.5 198,212 + MPMX19_06923 0.60 +0.5 198,213 - MPMX19_06923 0.61 +0.9 198,213 - MPMX19_06923 0.61 +0.3 198,213 - MPMX19_06923 0.61 +0.7 198,213 - MPMX19_06923 0.61 +0.4 198,213 - MPMX19_06923 0.61 -1.7
Or see this region's nucleotide sequence