Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06797 and MPMX19_06798 are separated by 17 nucleotides MPMX19_06798 and MPMX19_06799 are separated by 59 nucleotides MPMX19_06799 and MPMX19_06800 overlap by 4 nucleotides MPMX19_06800 and MPMX19_06801 are separated by 4 nucleotides
MPMX19_06797: MPMX19_06797 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 62,899 to 63,288
_06797
MPMX19_06798: MPMX19_06798 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 63,306 to 64,154
_06798
MPMX19_06799: MPMX19_06799 - Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase, at 64,214 to 64,954
_06799
MPMX19_06800: MPMX19_06800 - Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase, at 64,951 to 65,619
_06800
MPMX19_06801: MPMX19_06801 - C4-dicarboxylate TRAP transporter large permease protein DctM, at 65,624 to 66,955
_06801
Position (kb) 64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.266 kb on + strand at 63.266 kb on + strand at 63.266 kb on + strand at 63.267 kb on - strand at 63.267 kb on - strand at 63.267 kb on - strand at 63.267 kb on - strand at 63.267 kb on - strand at 63.289 kb on - strand at 63.355 kb on + strand at 63.385 kb on + strand at 63.385 kb on + strand at 63.386 kb on - strand at 63.433 kb on + strand, within MPMX19_06798 at 63.433 kb on + strand, within MPMX19_06798 at 63.434 kb on - strand, within MPMX19_06798 at 63.434 kb on - strand, within MPMX19_06798 at 63.460 kb on + strand, within MPMX19_06798 at 63.460 kb on + strand, within MPMX19_06798 at 63.460 kb on + strand, within MPMX19_06798 at 63.460 kb on + strand, within MPMX19_06798 at 63.460 kb on + strand, within MPMX19_06798 at 63.460 kb on + strand, within MPMX19_06798 at 63.461 kb on - strand, within MPMX19_06798 at 63.461 kb on - strand, within MPMX19_06798 at 63.461 kb on - strand, within MPMX19_06798 at 63.461 kb on - strand, within MPMX19_06798 at 63.461 kb on - strand, within MPMX19_06798 at 63.461 kb on - strand, within MPMX19_06798 at 63.461 kb on - strand, within MPMX19_06798 at 63.565 kb on + strand, within MPMX19_06798 at 63.565 kb on + strand, within MPMX19_06798 at 63.566 kb on - strand, within MPMX19_06798 at 63.566 kb on - strand, within MPMX19_06798 at 63.640 kb on + strand, within MPMX19_06798 at 63.640 kb on + strand, within MPMX19_06798 at 63.640 kb on + strand, within MPMX19_06798 at 63.640 kb on + strand, within MPMX19_06798 at 63.640 kb on + strand, within MPMX19_06798 at 63.640 kb on + strand, within MPMX19_06798 at 63.640 kb on + strand, within MPMX19_06798 at 63.641 kb on - strand, within MPMX19_06798 at 63.641 kb on - strand, within MPMX19_06798 at 63.641 kb on - strand, within MPMX19_06798 at 63.641 kb on - strand, within MPMX19_06798 at 63.641 kb on - strand, within MPMX19_06798 at 63.641 kb on - strand, within MPMX19_06798 at 63.757 kb on + strand, within MPMX19_06798 at 63.757 kb on + strand, within MPMX19_06798 at 63.757 kb on + strand, within MPMX19_06798 at 63.757 kb on + strand, within MPMX19_06798 at 63.757 kb on + strand, within MPMX19_06798 at 63.757 kb on + strand, within MPMX19_06798 at 63.757 kb on + strand, within MPMX19_06798 at 63.781 kb on + strand, within MPMX19_06798 at 63.781 kb on + strand, within MPMX19_06798 at 63.881 kb on - strand, within MPMX19_06798 at 63.886 kb on + strand, within MPMX19_06798 at 63.928 kb on + strand, within MPMX19_06798 at 63.928 kb on + strand, within MPMX19_06798 at 63.929 kb on - strand, within MPMX19_06798 at 63.929 kb on - strand, within MPMX19_06798 at 64.105 kb on + strand at 64.105 kb on + strand at 64.105 kb on + strand at 64.105 kb on + strand at 64.105 kb on + strand at 64.106 kb on - strand at 64.106 kb on - strand at 64.106 kb on - strand at 64.106 kb on - strand at 64.106 kb on - strand at 64.106 kb on - strand at 64.359 kb on + strand, within MPMX19_06799 at 64.360 kb on - strand, within MPMX19_06799 at 64.540 kb on - strand, within MPMX19_06799 at 64.542 kb on + strand, within MPMX19_06799 at 64.542 kb on + strand, within MPMX19_06799 at 64.542 kb on + strand, within MPMX19_06799 at 64.542 kb on + strand, within MPMX19_06799 at 64.543 kb on - strand, within MPMX19_06799 at 64.543 kb on - strand, within MPMX19_06799 at 64.543 kb on - strand, within MPMX19_06799 at 64.543 kb on - strand, within MPMX19_06799 at 64.554 kb on + strand, within MPMX19_06799 at 64.554 kb on + strand, within MPMX19_06799 at 64.555 kb on - strand, within MPMX19_06799 at 64.569 kb on + strand, within MPMX19_06799 at 64.569 kb on + strand, within MPMX19_06799 at 64.570 kb on - strand, within MPMX19_06799 at 64.570 kb on - strand, within MPMX19_06799 at 64.570 kb on - strand, within MPMX19_06799 at 64.605 kb on + strand, within MPMX19_06799 at 64.606 kb on - strand, within MPMX19_06799 at 64.668 kb on + strand, within MPMX19_06799 at 64.669 kb on - strand, within MPMX19_06799 at 64.669 kb on - strand, within MPMX19_06799 at 64.669 kb on - strand, within MPMX19_06799 at 64.669 kb on - strand, within MPMX19_06799 at 64.797 kb on + strand, within MPMX19_06799 at 64.797 kb on + strand, within MPMX19_06799 at 64.797 kb on + strand, within MPMX19_06799 at 64.797 kb on + strand, within MPMX19_06799 at 64.797 kb on + strand, within MPMX19_06799 at 64.798 kb on - strand, within MPMX19_06799 at 65.060 kb on - strand, within MPMX19_06800 at 65.480 kb on + strand, within MPMX19_06800 at 65.480 kb on + strand, within MPMX19_06800 at 65.481 kb on - strand, within MPMX19_06800 at 65.492 kb on + strand, within MPMX19_06800 at 65.492 kb on + strand, within MPMX19_06800 at 65.492 kb on + strand, within MPMX19_06800 at 65.493 kb on - strand, within MPMX19_06800 at 65.493 kb on - strand, within MPMX19_06800 at 65.493 kb on - strand, within MPMX19_06800 at 65.522 kb on + strand, within MPMX19_06800 at 65.522 kb on + strand, within MPMX19_06800 at 65.588 kb on + strand at 65.588 kb on + strand at 65.589 kb on - strand at 65.589 kb on - strand at 65.772 kb on + strand, within MPMX19_06801 at 65.772 kb on + strand, within MPMX19_06801 at 65.772 kb on + strand, within MPMX19_06801 at 65.773 kb on - strand, within MPMX19_06801 at 65.773 kb on - strand, within MPMX19_06801 at 65.773 kb on - strand, within MPMX19_06801
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 63,266 + -0.3 63,266 + -2.7 63,266 + -0.9 63,267 - -0.4 63,267 - -1.3 63,267 - -1.5 63,267 - -0.3 63,267 - +1.3 63,289 - -1.0 63,355 + -1.7 63,385 + -0.7 63,385 + -2.9 63,386 - -0.3 63,433 + MPMX19_06798 0.15 +0.2 63,433 + MPMX19_06798 0.15 -0.4 63,434 - MPMX19_06798 0.15 -0.7 63,434 - MPMX19_06798 0.15 -0.1 63,460 + MPMX19_06798 0.18 +0.2 63,460 + MPMX19_06798 0.18 +0.2 63,460 + MPMX19_06798 0.18 -0.4 63,460 + MPMX19_06798 0.18 -0.1 63,460 + MPMX19_06798 0.18 -0.3 63,460 + MPMX19_06798 0.18 -2.1 63,461 - MPMX19_06798 0.18 -0.6 63,461 - MPMX19_06798 0.18 -1.2 63,461 - MPMX19_06798 0.18 -1.8 63,461 - MPMX19_06798 0.18 -0.1 63,461 - MPMX19_06798 0.18 -0.6 63,461 - MPMX19_06798 0.18 +0.3 63,461 - MPMX19_06798 0.18 -0.3 63,565 + MPMX19_06798 0.31 +0.9 63,565 + MPMX19_06798 0.31 +0.7 63,566 - MPMX19_06798 0.31 -0.8 63,566 - MPMX19_06798 0.31 -1.3 63,640 + MPMX19_06798 0.39 -1.5 63,640 + MPMX19_06798 0.39 -0.7 63,640 + MPMX19_06798 0.39 -1.5 63,640 + MPMX19_06798 0.39 +0.5 63,640 + MPMX19_06798 0.39 -0.8 63,640 + MPMX19_06798 0.39 +0.9 63,640 + MPMX19_06798 0.39 -0.3 63,641 - MPMX19_06798 0.39 +0.0 63,641 - MPMX19_06798 0.39 -1.2 63,641 - MPMX19_06798 0.39 -0.3 63,641 - MPMX19_06798 0.39 -0.5 63,641 - MPMX19_06798 0.39 +0.1 63,641 - MPMX19_06798 0.39 +0.1 63,757 + MPMX19_06798 0.53 +0.3 63,757 + MPMX19_06798 0.53 -0.3 63,757 + MPMX19_06798 0.53 -1.8 63,757 + MPMX19_06798 0.53 +0.3 63,757 + MPMX19_06798 0.53 +0.1 63,757 + MPMX19_06798 0.53 +0.7 63,757 + MPMX19_06798 0.53 +0.8 63,781 + MPMX19_06798 0.56 -1.5 63,781 + MPMX19_06798 0.56 -0.2 63,881 - MPMX19_06798 0.68 -1.1 63,886 + MPMX19_06798 0.68 -0.7 63,928 + MPMX19_06798 0.73 -0.3 63,928 + MPMX19_06798 0.73 -1.0 63,929 - MPMX19_06798 0.73 -1.1 63,929 - MPMX19_06798 0.73 -1.0 64,105 + +0.5 64,105 + -1.5 64,105 + +0.3 64,105 + -0.7 64,105 + -1.7 64,106 - -1.0 64,106 - -0.7 64,106 - -0.1 64,106 - +1.0 64,106 - -0.7 64,106 - -0.4 64,359 + MPMX19_06799 0.20 -1.6 64,360 - MPMX19_06799 0.20 +0.7 64,540 - MPMX19_06799 0.44 -1.3 64,542 + MPMX19_06799 0.44 +0.6 64,542 + MPMX19_06799 0.44 +1.4 64,542 + MPMX19_06799 0.44 -0.3 64,542 + MPMX19_06799 0.44 -0.1 64,543 - MPMX19_06799 0.44 +0.4 64,543 - MPMX19_06799 0.44 -0.1 64,543 - MPMX19_06799 0.44 +0.7 64,543 - MPMX19_06799 0.44 -0.5 64,554 + MPMX19_06799 0.46 -0.7 64,554 + MPMX19_06799 0.46 -0.7 64,555 - MPMX19_06799 0.46 -1.9 64,569 + MPMX19_06799 0.48 -0.3 64,569 + MPMX19_06799 0.48 +0.7 64,570 - MPMX19_06799 0.48 -1.3 64,570 - MPMX19_06799 0.48 +0.2 64,570 - MPMX19_06799 0.48 +0.7 64,605 + MPMX19_06799 0.53 -1.9 64,606 - MPMX19_06799 0.53 +1.0 64,668 + MPMX19_06799 0.61 -1.0 64,669 - MPMX19_06799 0.61 -0.5 64,669 - MPMX19_06799 0.61 -0.2 64,669 - MPMX19_06799 0.61 +0.1 64,669 - MPMX19_06799 0.61 +2.4 64,797 + MPMX19_06799 0.79 -1.1 64,797 + MPMX19_06799 0.79 +0.3 64,797 + MPMX19_06799 0.79 -0.3 64,797 + MPMX19_06799 0.79 -0.9 64,797 + MPMX19_06799 0.79 +0.8 64,798 - MPMX19_06799 0.79 -0.9 65,060 - MPMX19_06800 0.16 -0.8 65,480 + MPMX19_06800 0.79 -1.8 65,480 + MPMX19_06800 0.79 +0.7 65,481 - MPMX19_06800 0.79 -2.5 65,492 + MPMX19_06800 0.81 -1.2 65,492 + MPMX19_06800 0.81 -1.1 65,492 + MPMX19_06800 0.81 -0.5 65,493 - MPMX19_06800 0.81 -0.8 65,493 - MPMX19_06800 0.81 -0.7 65,493 - MPMX19_06800 0.81 +0.7 65,522 + MPMX19_06800 0.85 -0.3 65,522 + MPMX19_06800 0.85 +0.3 65,588 + -1.9 65,588 + -1.5 65,589 - +0.5 65,589 - +0.2 65,772 + MPMX19_06801 0.11 +0.3 65,772 + MPMX19_06801 0.11 -0.3 65,772 + MPMX19_06801 0.11 -0.7 65,773 - MPMX19_06801 0.11 -1.8 65,773 - MPMX19_06801 0.11 -1.3 65,773 - MPMX19_06801 0.11 -0.7
Or see this region's nucleotide sequence