Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06715 and MPMX19_06716 are separated by 46 nucleotides MPMX19_06716 and MPMX19_06717 are separated by 126 nucleotides
MPMX19_06715: MPMX19_06715 - hypothetical protein, at 287,218 to 288,666
_06715
MPMX19_06716: MPMX19_06716 - hypothetical protein, at 288,713 to 288,883
_06716
MPMX19_06717: MPMX19_06717 - IS5 family transposase ISAzs10, at 289,010 to 290,086
_06717
Position (kb) 288
289 Strain fitness (log2 ratio) -2
-1
0
1
2 at 287.866 kb on + strand, within MPMX19_06715 at 287.866 kb on + strand, within MPMX19_06715 at 287.866 kb on + strand, within MPMX19_06715 at 287.866 kb on + strand, within MPMX19_06715 at 287.866 kb on + strand, within MPMX19_06715 at 287.866 kb on + strand, within MPMX19_06715 at 287.867 kb on - strand, within MPMX19_06715 at 287.867 kb on - strand, within MPMX19_06715 at 287.867 kb on - strand, within MPMX19_06715 at 287.867 kb on - strand, within MPMX19_06715 at 287.867 kb on - strand, within MPMX19_06715 at 287.869 kb on + strand, within MPMX19_06715 at 287.869 kb on + strand, within MPMX19_06715 at 287.869 kb on + strand, within MPMX19_06715 at 287.869 kb on + strand, within MPMX19_06715 at 287.869 kb on + strand, within MPMX19_06715 at 287.869 kb on + strand, within MPMX19_06715 at 287.869 kb on + strand, within MPMX19_06715 at 287.869 kb on + strand, within MPMX19_06715 at 287.869 kb on + strand, within MPMX19_06715 at 287.869 kb on + strand, within MPMX19_06715 at 287.869 kb on + strand, within MPMX19_06715 at 287.870 kb on - strand, within MPMX19_06715 at 287.870 kb on - strand, within MPMX19_06715 at 287.870 kb on - strand, within MPMX19_06715 at 287.870 kb on - strand, within MPMX19_06715 at 287.870 kb on - strand, within MPMX19_06715 at 287.870 kb on - strand, within MPMX19_06715 at 287.870 kb on - strand, within MPMX19_06715 at 287.870 kb on - strand, within MPMX19_06715 at 287.870 kb on - strand, within MPMX19_06715 at 287.870 kb on - strand, within MPMX19_06715 at 287.870 kb on - strand, within MPMX19_06715 at 287.870 kb on - strand, within MPMX19_06715 at 287.935 kb on + strand, within MPMX19_06715 at 287.936 kb on - strand, within MPMX19_06715 at 287.936 kb on - strand, within MPMX19_06715 at 287.936 kb on - strand, within MPMX19_06715 at 287.936 kb on - strand, within MPMX19_06715 at 287.936 kb on - strand, within MPMX19_06715 at 288.264 kb on + strand, within MPMX19_06715 at 288.265 kb on - strand, within MPMX19_06715 at 288.307 kb on + strand, within MPMX19_06715 at 288.307 kb on + strand, within MPMX19_06715 at 288.307 kb on + strand, within MPMX19_06715 at 288.307 kb on + strand, within MPMX19_06715 at 288.307 kb on + strand, within MPMX19_06715 at 288.308 kb on - strand, within MPMX19_06715 at 288.308 kb on - strand, within MPMX19_06715 at 288.308 kb on - strand, within MPMX19_06715 at 288.308 kb on - strand, within MPMX19_06715 at 288.308 kb on - strand, within MPMX19_06715 at 288.308 kb on - strand, within MPMX19_06715 at 288.308 kb on - strand, within MPMX19_06715 at 288.308 kb on - strand, within MPMX19_06715 at 288.308 kb on - strand, within MPMX19_06715 at 288.565 kb on + strand at 288.565 kb on + strand at 288.565 kb on + strand at 288.565 kb on + strand at 288.565 kb on + strand at 288.565 kb on + strand at 288.565 kb on + strand at 288.565 kb on + strand at 288.565 kb on + strand at 288.566 kb on - strand at 288.566 kb on - strand at 288.566 kb on - strand at 288.607 kb on + strand at 288.607 kb on + strand at 288.607 kb on + strand at 288.607 kb on + strand at 288.607 kb on + strand at 288.607 kb on + strand at 288.608 kb on - strand at 288.608 kb on - strand at 288.608 kb on - strand at 288.608 kb on - strand at 288.608 kb on - strand at 288.608 kb on - strand at 288.608 kb on - strand at 288.674 kb on + strand at 288.674 kb on + strand at 288.674 kb on + strand at 288.674 kb on + strand at 288.674 kb on + strand at 288.674 kb on + strand at 288.674 kb on + strand at 288.674 kb on + strand at 288.674 kb on + strand at 288.675 kb on - strand at 288.675 kb on - strand at 288.675 kb on - strand at 288.675 kb on - strand at 288.675 kb on - strand at 288.675 kb on - strand at 288.675 kb on - strand at 288.675 kb on - strand at 288.675 kb on - strand at 288.675 kb on - strand at 288.675 kb on - strand at 288.675 kb on - strand at 288.675 kb on - strand at 288.675 kb on - strand at 288.753 kb on + strand, within MPMX19_06716 at 288.753 kb on + strand, within MPMX19_06716 at 288.753 kb on + strand, within MPMX19_06716 at 288.753 kb on + strand, within MPMX19_06716 at 288.753 kb on + strand, within MPMX19_06716 at 288.753 kb on + strand, within MPMX19_06716 at 288.753 kb on + strand, within MPMX19_06716 at 288.754 kb on - strand, within MPMX19_06716 at 288.754 kb on - strand, within MPMX19_06716 at 288.754 kb on - strand, within MPMX19_06716 at 288.754 kb on - strand, within MPMX19_06716 at 288.754 kb on - strand, within MPMX19_06716 at 288.754 kb on - strand, within MPMX19_06716 at 288.754 kb on - strand, within MPMX19_06716 at 288.754 kb on - strand, within MPMX19_06716 at 288.754 kb on - strand, within MPMX19_06716 at 288.754 kb on - strand, within MPMX19_06716 at 288.856 kb on + strand, within MPMX19_06716 at 288.856 kb on + strand, within MPMX19_06716 at 288.856 kb on + strand, within MPMX19_06716 at 288.856 kb on + strand, within MPMX19_06716 at 288.856 kb on + strand, within MPMX19_06716 at 288.856 kb on + strand, within MPMX19_06716 at 288.856 kb on + strand, within MPMX19_06716 at 288.857 kb on - strand, within MPMX19_06716 at 288.857 kb on - strand, within MPMX19_06716 at 288.857 kb on - strand, within MPMX19_06716 at 288.857 kb on - strand, within MPMX19_06716 at 288.857 kb on - strand, within MPMX19_06716 at 288.857 kb on - strand, within MPMX19_06716 at 288.857 kb on - strand, within MPMX19_06716 at 288.857 kb on - strand, within MPMX19_06716 at 288.857 kb on - strand, within MPMX19_06716 at 288.857 kb on - strand, within MPMX19_06716 at 288.857 kb on - strand, within MPMX19_06716 at 288.857 kb on - strand, within MPMX19_06716 at 288.876 kb on + strand at 288.876 kb on + strand at 288.876 kb on + strand at 288.876 kb on + strand at 288.877 kb on - strand at 288.877 kb on - strand at 288.877 kb on - strand at 288.928 kb on - strand at 288.928 kb on - strand at 288.928 kb on - strand at 288.928 kb on - strand at 288.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 287,866 + MPMX19_06715 0.45 -0.7 287,866 + MPMX19_06715 0.45 -0.9 287,866 + MPMX19_06715 0.45 -0.7 287,866 + MPMX19_06715 0.45 +0.2 287,866 + MPMX19_06715 0.45 -2.0 287,866 + MPMX19_06715 0.45 -1.0 287,867 - MPMX19_06715 0.45 -0.9 287,867 - MPMX19_06715 0.45 +0.9 287,867 - MPMX19_06715 0.45 -0.0 287,867 - MPMX19_06715 0.45 -0.5 287,867 - MPMX19_06715 0.45 +0.1 287,869 + MPMX19_06715 0.45 -0.1 287,869 + MPMX19_06715 0.45 -1.5 287,869 + MPMX19_06715 0.45 -0.1 287,869 + MPMX19_06715 0.45 +0.3 287,869 + MPMX19_06715 0.45 -0.2 287,869 + MPMX19_06715 0.45 +0.4 287,869 + MPMX19_06715 0.45 -0.4 287,869 + MPMX19_06715 0.45 +0.4 287,869 + MPMX19_06715 0.45 -2.3 287,869 + MPMX19_06715 0.45 -2.7 287,869 + MPMX19_06715 0.45 -0.6 287,870 - MPMX19_06715 0.45 +0.7 287,870 - MPMX19_06715 0.45 -0.3 287,870 - MPMX19_06715 0.45 +0.7 287,870 - MPMX19_06715 0.45 -0.2 287,870 - MPMX19_06715 0.45 -0.2 287,870 - MPMX19_06715 0.45 +0.3 287,870 - MPMX19_06715 0.45 -1.1 287,870 - MPMX19_06715 0.45 -0.2 287,870 - MPMX19_06715 0.45 +0.4 287,870 - MPMX19_06715 0.45 -0.1 287,870 - MPMX19_06715 0.45 +0.9 287,870 - MPMX19_06715 0.45 -1.3 287,935 + MPMX19_06715 0.49 -0.9 287,936 - MPMX19_06715 0.50 -1.1 287,936 - MPMX19_06715 0.50 +0.9 287,936 - MPMX19_06715 0.50 +0.5 287,936 - MPMX19_06715 0.50 -0.2 287,936 - MPMX19_06715 0.50 +0.4 288,264 + MPMX19_06715 0.72 -1.6 288,265 - MPMX19_06715 0.72 +0.4 288,307 + MPMX19_06715 0.75 -1.0 288,307 + MPMX19_06715 0.75 -1.3 288,307 + MPMX19_06715 0.75 -0.9 288,307 + MPMX19_06715 0.75 +0.1 288,307 + MPMX19_06715 0.75 -0.1 288,308 - MPMX19_06715 0.75 -0.1 288,308 - MPMX19_06715 0.75 -0.2 288,308 - MPMX19_06715 0.75 +0.1 288,308 - MPMX19_06715 0.75 +0.3 288,308 - MPMX19_06715 0.75 -0.5 288,308 - MPMX19_06715 0.75 +0.3 288,308 - MPMX19_06715 0.75 -1.1 288,308 - MPMX19_06715 0.75 -0.5 288,308 - MPMX19_06715 0.75 -0.7 288,565 + +1.4 288,565 + -0.8 288,565 + +0.2 288,565 + -0.7 288,565 + -1.3 288,565 + -1.8 288,565 + -0.5 288,565 + +0.0 288,565 + -0.2 288,566 - -0.9 288,566 - +0.3 288,566 - -2.2 288,607 + +0.1 288,607 + -1.1 288,607 + -0.0 288,607 + -1.9 288,607 + +0.7 288,607 + +0.0 288,608 - -0.2 288,608 - +0.2 288,608 - +0.2 288,608 - -0.9 288,608 - -0.1 288,608 - -0.1 288,608 - +1.3 288,674 + +0.4 288,674 + -0.1 288,674 + -0.2 288,674 + -0.5 288,674 + -0.7 288,674 + +2.4 288,674 + -1.2 288,674 + -0.1 288,674 + -1.7 288,675 - +0.2 288,675 - -0.2 288,675 - -0.7 288,675 - +0.1 288,675 - -0.1 288,675 - +0.3 288,675 - -1.6 288,675 - +0.4 288,675 - -0.0 288,675 - +0.8 288,675 - -0.7 288,675 - -0.3 288,675 - +1.1 288,675 - -2.4 288,753 + MPMX19_06716 0.23 -1.7 288,753 + MPMX19_06716 0.23 -0.5 288,753 + MPMX19_06716 0.23 -0.8 288,753 + MPMX19_06716 0.23 -1.4 288,753 + MPMX19_06716 0.23 -1.1 288,753 + MPMX19_06716 0.23 -0.6 288,753 + MPMX19_06716 0.23 -0.3 288,754 - MPMX19_06716 0.24 -0.7 288,754 - MPMX19_06716 0.24 -1.2 288,754 - MPMX19_06716 0.24 -2.0 288,754 - MPMX19_06716 0.24 -1.9 288,754 - MPMX19_06716 0.24 +0.1 288,754 - MPMX19_06716 0.24 -0.3 288,754 - MPMX19_06716 0.24 -1.9 288,754 - MPMX19_06716 0.24 +0.3 288,754 - MPMX19_06716 0.24 -1.9 288,754 - MPMX19_06716 0.24 -0.7 288,856 + MPMX19_06716 0.84 +0.4 288,856 + MPMX19_06716 0.84 -1.5 288,856 + MPMX19_06716 0.84 -1.7 288,856 + MPMX19_06716 0.84 -2.0 288,856 + MPMX19_06716 0.84 -1.5 288,856 + MPMX19_06716 0.84 +0.7 288,856 + MPMX19_06716 0.84 -1.6 288,857 - MPMX19_06716 0.84 -1.7 288,857 - MPMX19_06716 0.84 -1.6 288,857 - MPMX19_06716 0.84 -0.9 288,857 - MPMX19_06716 0.84 -1.8 288,857 - MPMX19_06716 0.84 -0.2 288,857 - MPMX19_06716 0.84 -0.3 288,857 - MPMX19_06716 0.84 -0.4 288,857 - MPMX19_06716 0.84 -1.4 288,857 - MPMX19_06716 0.84 +0.1 288,857 - MPMX19_06716 0.84 -0.1 288,857 - MPMX19_06716 0.84 -1.7 288,857 - MPMX19_06716 0.84 -0.5 288,876 + +0.5 288,876 + +0.9 288,876 + -0.1 288,876 + +1.4 288,877 - -1.1 288,877 - -0.8 288,877 - -2.5 288,928 - -0.0 288,928 - -0.5 288,928 - +1.0 288,928 - +0.8 288,928 - +0.7
Or see this region's nucleotide sequence