Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06695 and MPMX19_06696 are separated by 193 nucleotides MPMX19_06696 and MPMX19_06697 are separated by 154 nucleotides MPMX19_06697 and MPMX19_06698 are separated by 11 nucleotides MPMX19_06698 and MPMX19_06699 are separated by 12 nucleotides
MPMX19_06695: MPMX19_06695 - hypothetical protein, at 264,964 to 266,169
_06695
MPMX19_06696: MPMX19_06696 - hypothetical protein, at 266,363 to 266,851
_06696
MPMX19_06697: MPMX19_06697 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase, at 267,006 to 267,548
_06697
MPMX19_06698: MPMX19_06698 - hypothetical protein, at 267,560 to 267,949
_06698
MPMX19_06699: MPMX19_06699 - Nickel/cobalt efflux system RcnA, at 267,962 to 268,831
_06699
Position (kb) 267
268 Strain fitness (log2 ratio) -2
-1
0
1
2 at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.171 kb on - strand at 266.171 kb on - strand at 266.219 kb on + strand at 266.498 kb on + strand, within MPMX19_06696 at 266.498 kb on + strand, within MPMX19_06696 at 266.498 kb on + strand, within MPMX19_06696 at 266.498 kb on + strand, within MPMX19_06696 at 266.498 kb on + strand, within MPMX19_06696 at 266.499 kb on - strand, within MPMX19_06696 at 266.499 kb on - strand, within MPMX19_06696 at 266.899 kb on + strand at 266.899 kb on + strand at 266.899 kb on + strand at 266.900 kb on - strand at 266.984 kb on + strand at 266.984 kb on + strand at 266.984 kb on + strand at 267.555 kb on - strand at 267.561 kb on + strand at 267.561 kb on + strand at 267.561 kb on + strand at 267.562 kb on - strand at 267.562 kb on - strand at 267.774 kb on + strand, within MPMX19_06698 at 267.774 kb on + strand, within MPMX19_06698 at 267.775 kb on - strand, within MPMX19_06698 at 267.775 kb on - strand, within MPMX19_06698 at 267.775 kb on - strand, within MPMX19_06698 at 267.825 kb on + strand, within MPMX19_06698 at 267.826 kb on - strand, within MPMX19_06698 at 267.826 kb on - strand, within MPMX19_06698 at 267.826 kb on - strand, within MPMX19_06698 at 267.826 kb on - strand, within MPMX19_06698 at 267.826 kb on - strand, within MPMX19_06698 at 267.891 kb on + strand, within MPMX19_06698 at 267.891 kb on + strand, within MPMX19_06698 at 267.891 kb on + strand, within MPMX19_06698 at 267.891 kb on + strand, within MPMX19_06698 at 267.891 kb on + strand, within MPMX19_06698 at 267.891 kb on + strand, within MPMX19_06698 at 267.891 kb on + strand, within MPMX19_06698 at 267.892 kb on - strand, within MPMX19_06698 at 267.892 kb on - strand, within MPMX19_06698 at 267.892 kb on - strand, within MPMX19_06698 at 267.892 kb on - strand, within MPMX19_06698 at 267.892 kb on - strand, within MPMX19_06698 at 267.892 kb on - strand, within MPMX19_06698 at 267.892 kb on - strand, within MPMX19_06698 at 267.963 kb on + strand at 267.963 kb on + strand at 268.014 kb on + strand at 268.014 kb on + strand at 268.014 kb on + strand at 268.015 kb on - strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.047 kb on + strand at 268.048 kb on - strand at 268.048 kb on - strand at 268.048 kb on - strand at 268.048 kb on - strand at 268.048 kb on - strand at 268.048 kb on - strand at 268.048 kb on - strand at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.083 kb on + strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699 at 268.084 kb on - strand, within MPMX19_06699
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 266,135 + -0.2 266,135 + +0.4 266,135 + -0.3 266,135 + -0.4 266,135 + -1.5 266,135 + -0.3 266,135 + -0.9 266,135 + -0.4 266,135 + -1.6 266,135 + -1.5 266,135 + -0.6 266,135 + -1.2 266,135 + -0.2 266,135 + +0.1 266,135 + -0.1 266,135 + -2.0 266,135 + -1.0 266,135 + -0.6 266,135 + -0.4 266,135 + -0.2 266,136 - +0.0 266,136 - -1.1 266,136 - -0.1 266,136 - +0.1 266,136 - +0.9 266,136 - +1.0 266,136 - +0.2 266,136 - -0.6 266,136 - -0.5 266,136 - +0.2 266,136 - -1.1 266,136 - -0.7 266,136 - -0.6 266,136 - +0.1 266,136 - -0.3 266,136 - -0.2 266,136 - -0.2 266,171 - +0.3 266,171 - -0.8 266,219 + -0.9 266,498 + MPMX19_06696 0.28 -1.6 266,498 + MPMX19_06696 0.28 +0.3 266,498 + MPMX19_06696 0.28 -1.1 266,498 + MPMX19_06696 0.28 +0.9 266,498 + MPMX19_06696 0.28 -2.5 266,499 - MPMX19_06696 0.28 -0.9 266,499 - MPMX19_06696 0.28 -0.5 266,899 + -0.5 266,899 + -2.3 266,899 + -1.2 266,900 - -0.7 266,984 + +0.4 266,984 + -1.5 266,984 + +0.5 267,555 - -1.0 267,561 + +0.6 267,561 + -2.0 267,561 + -0.9 267,562 - -0.5 267,562 - +0.8 267,774 + MPMX19_06698 0.55 -0.2 267,774 + MPMX19_06698 0.55 +0.1 267,775 - MPMX19_06698 0.55 -1.1 267,775 - MPMX19_06698 0.55 +0.3 267,775 - MPMX19_06698 0.55 -0.7 267,825 + MPMX19_06698 0.68 +1.0 267,826 - MPMX19_06698 0.68 -1.0 267,826 - MPMX19_06698 0.68 -2.0 267,826 - MPMX19_06698 0.68 +0.1 267,826 - MPMX19_06698 0.68 +0.2 267,826 - MPMX19_06698 0.68 +0.8 267,891 + MPMX19_06698 0.85 -0.2 267,891 + MPMX19_06698 0.85 +0.2 267,891 + MPMX19_06698 0.85 -0.9 267,891 + MPMX19_06698 0.85 +0.1 267,891 + MPMX19_06698 0.85 -1.0 267,891 + MPMX19_06698 0.85 -0.3 267,891 + MPMX19_06698 0.85 -1.5 267,892 - MPMX19_06698 0.85 -0.2 267,892 - MPMX19_06698 0.85 -0.7 267,892 - MPMX19_06698 0.85 -0.7 267,892 - MPMX19_06698 0.85 +0.7 267,892 - MPMX19_06698 0.85 -2.3 267,892 - MPMX19_06698 0.85 -0.5 267,892 - MPMX19_06698 0.85 -0.3 267,963 + -1.9 267,963 + -1.3 268,014 + -1.5 268,014 + +0.1 268,014 + -0.3 268,015 - -1.2 268,047 + +0.3 268,047 + -0.9 268,047 + +0.6 268,047 + -0.9 268,047 + -0.4 268,047 + +0.1 268,047 + -1.0 268,047 + -1.0 268,047 + +0.1 268,048 - -0.4 268,048 - -2.0 268,048 - -0.9 268,048 - -0.4 268,048 - +2.2 268,048 - -1.0 268,048 - -0.9 268,083 + MPMX19_06699 0.14 -0.5 268,083 + MPMX19_06699 0.14 -1.5 268,083 + MPMX19_06699 0.14 -1.9 268,083 + MPMX19_06699 0.14 +0.0 268,083 + MPMX19_06699 0.14 -0.7 268,083 + MPMX19_06699 0.14 -0.7 268,083 + MPMX19_06699 0.14 +0.0 268,083 + MPMX19_06699 0.14 +0.0 268,083 + MPMX19_06699 0.14 -0.0 268,083 + MPMX19_06699 0.14 -0.7 268,083 + MPMX19_06699 0.14 -0.3 268,084 - MPMX19_06699 0.14 +0.7 268,084 - MPMX19_06699 0.14 +0.4 268,084 - MPMX19_06699 0.14 -0.2 268,084 - MPMX19_06699 0.14 -1.6 268,084 - MPMX19_06699 0.14 -0.1 268,084 - MPMX19_06699 0.14 -1.0 268,084 - MPMX19_06699 0.14 -0.1 268,084 - MPMX19_06699 0.14 -1.4 268,084 - MPMX19_06699 0.14 -0.8 268,084 - MPMX19_06699 0.14 +1.3 268,084 - MPMX19_06699 0.14 -0.1 268,084 - MPMX19_06699 0.14 -0.3
Or see this region's nucleotide sequence