Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06563

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
33,631	+		MPMX19_06562	0.74	+0.5
33,631	+		MPMX19_06562	0.74	+0.8
33,631	+		MPMX19_06562	0.74	-1.5
33,631	+		MPMX19_06562	0.74	-0.6
33,631	+		MPMX19_06562	0.74	-0.6
33,631	+		MPMX19_06562	0.74	-0.2
33,631	+		MPMX19_06562	0.74	-0.2
33,631	+		MPMX19_06562	0.74	-0.0
33,631	+		MPMX19_06562	0.74	+0.2
33,631	+		MPMX19_06562	0.74	+1.3
33,631	+		MPMX19_06562	0.74	-0.2
33,631	+		MPMX19_06562	0.74	-0.4
33,631	+		MPMX19_06562	0.74	-1.5
33,631	+		MPMX19_06562	0.74	-1.3
33,631	+		MPMX19_06562	0.74	-1.5
33,631	+		MPMX19_06562	0.74	-0.1
33,631	+		MPMX19_06562	0.74	+0.0
33,631	+		MPMX19_06562	0.74	+0.1
33,631	+		MPMX19_06562	0.74	-0.6
33,632	-		MPMX19_06562	0.74	-1.3
33,632	-		MPMX19_06562	0.74	+1.1
33,632	-		MPMX19_06562	0.74	-1.1
33,632	-		MPMX19_06562	0.74	-1.2
33,632	-		MPMX19_06562	0.74	-1.5
33,632	-		MPMX19_06562	0.74	+0.3
33,632	-		MPMX19_06562	0.74	-0.7
33,632	-		MPMX19_06562	0.74	-0.9
33,632	-		MPMX19_06562	0.74	-0.8
33,632	-		MPMX19_06562	0.74	+0.1
33,632	-		MPMX19_06562	0.74	+0.7
33,632	-		MPMX19_06562	0.74	+0.2
33,632	-		MPMX19_06562	0.74	+1.1
33,643	+		MPMX19_06562	0.75	-1.0
33,643	+		MPMX19_06562	0.75	+0.1
33,643	+		MPMX19_06562	0.75	+0.4
33,644	-		MPMX19_06562	0.75	-0.1
33,644	-		MPMX19_06562	0.75	-2.1
33,644	-		MPMX19_06562	0.75	-1.9
33,644	-		MPMX19_06562	0.75	-1.1
33,644	-		MPMX19_06562	0.75	-0.4
33,697	+		MPMX19_06562	0.77	+0.6
33,697	+		MPMX19_06562	0.77	+0.3
33,697	+		MPMX19_06562	0.77	-1.7
33,697	+		MPMX19_06562	0.77	-1.5
33,697	+		MPMX19_06562	0.77	-1.4
33,698	-		MPMX19_06562	0.77	-0.4
33,698	-		MPMX19_06562	0.77	-0.3
33,698	-		MPMX19_06562	0.77	-0.1
33,698	-		MPMX19_06562	0.77	-1.7
33,698	-		MPMX19_06562	0.77	-1.5
33,751	+		MPMX19_06562	0.79	-0.5
33,751	+		MPMX19_06562	0.79	+0.6
33,751	+		MPMX19_06562	0.79	-0.6
33,751	+		MPMX19_06562	0.79	-1.1
33,751	+		MPMX19_06562	0.79	+0.7
33,751	+		MPMX19_06562	0.79	-0.3
33,751	+		MPMX19_06562	0.79	+0.0
33,751	+		MPMX19_06562	0.79	+0.3
33,751	+		MPMX19_06562	0.79	-1.0
33,751	+		MPMX19_06562	0.79	-0.6
33,751	+		MPMX19_06562	0.79	-0.0
33,751	+		MPMX19_06562	0.79	-0.6
33,751	+		MPMX19_06562	0.79	-1.0
33,751	+		MPMX19_06562	0.79	+0.5
33,751	+		MPMX19_06562	0.79	-2.4
33,751	+		MPMX19_06562	0.79	-1.1
33,752	-		MPMX19_06562	0.79	-0.3
33,752	-		MPMX19_06562	0.79	+0.4
33,752	-		MPMX19_06562	0.79	+0.7
33,752	-		MPMX19_06562	0.79	+1.5
33,752	-		MPMX19_06562	0.79	-0.5
33,752	-		MPMX19_06562	0.79	-0.5
33,752	-		MPMX19_06562	0.79	+0.1
33,752	-		MPMX19_06562	0.79	+0.4
33,752	-		MPMX19_06562	0.79	-2.0
33,752	-		MPMX19_06562	0.79	+2.0
33,752	-		MPMX19_06562	0.79	+0.1
33,752	-		MPMX19_06562	0.79	+0.3
33,752	-		MPMX19_06562	0.79	-0.5
33,752	-		MPMX19_06562	0.79	+0.8
33,752	-		MPMX19_06562	0.79	+0.3
33,752	-		MPMX19_06562	0.79	+0.2
33,752	-		MPMX19_06562	0.79	-0.6
33,752	-		MPMX19_06562	0.79	-0.6
33,763	+		MPMX19_06562	0.79	-0.9
33,763	+		MPMX19_06562	0.79	-0.3
33,763	+		MPMX19_06562	0.79	-0.7
33,763	+		MPMX19_06562	0.79	-0.7
33,763	+		MPMX19_06562	0.79	+1.0
33,763	+		MPMX19_06562	0.79	-0.6
33,763	+		MPMX19_06562	0.79	-1.0
33,763	+		MPMX19_06562	0.79	-0.6
33,763	+		MPMX19_06562	0.79	-0.3
33,763	+		MPMX19_06562	0.79	+0.1
33,764	-		MPMX19_06562	0.79	-0.0
33,764	-		MPMX19_06562	0.79	-1.3
33,764	-		MPMX19_06562	0.79	+0.2
33,764	-		MPMX19_06562	0.79	+0.6
33,764	-		MPMX19_06562	0.79	-0.4
33,817	+		MPMX19_06562	0.81	-0.4
33,817	+		MPMX19_06562	0.81	-0.1
33,817	+		MPMX19_06562	0.81	-1.3
33,817	+		MPMX19_06562	0.81	+0.6
33,817	+		MPMX19_06562	0.81	-2.0
33,817	+		MPMX19_06562	0.81	-0.0
33,817	+		MPMX19_06562	0.81	-0.7
33,817	+		MPMX19_06562	0.81	+0.3
33,817	+		MPMX19_06562	0.81	-0.3
33,818	-		MPMX19_06562	0.82	+0.6
33,818	-		MPMX19_06562	0.82	+1.4
33,818	-		MPMX19_06562	0.82	-0.0
33,818	-		MPMX19_06562	0.82	+1.5
33,818	-		MPMX19_06562	0.82	+0.1
33,818	-		MPMX19_06562	0.82	-0.7
33,818	-		MPMX19_06562	0.82	+0.7
33,818	-		MPMX19_06562	0.82	-1.7
33,818	-		MPMX19_06562	0.82	+1.7
33,818	-		MPMX19_06562	0.82	-0.4
33,818	-		MPMX19_06562	0.82	-0.4
33,818	-		MPMX19_06562	0.82	-0.1
33,818	-		MPMX19_06562	0.82	+0.3
33,818	-		MPMX19_06562	0.82	-0.1
33,818	-		MPMX19_06562	0.82	-0.6
33,818	-		MPMX19_06562	0.82	-0.9
33,818	-		MPMX19_06562	0.82	-0.8
33,818	-		MPMX19_06562	0.82	-0.4
33,818	-		MPMX19_06562	0.82	-0.4
33,818	-		MPMX19_06562	0.82	-0.0
33,871	+		MPMX19_06562	0.84	-1.9
33,871	+		MPMX19_06562	0.84	+0.0
33,871	+		MPMX19_06562	0.84	-1.3
33,871	+		MPMX19_06562	0.84	-0.4
33,871	+		MPMX19_06562	0.84	-1.5
33,871	+		MPMX19_06562	0.84	-1.7
33,871	+		MPMX19_06562	0.84	+0.6
33,871	+		MPMX19_06562	0.84	-0.4
33,871	+		MPMX19_06562	0.84	+0.1
33,872	-		MPMX19_06562	0.84	+1.8
33,872	-		MPMX19_06562	0.84	-1.9
33,872	-		MPMX19_06562	0.84	+0.9
33,872	-		MPMX19_06562	0.84	-0.4
33,872	-		MPMX19_06562	0.84	-0.3
33,872	-		MPMX19_06562	0.84	+0.1
33,883	+		MPMX19_06562	0.84	-0.4
33,883	+		MPMX19_06562	0.84	+0.9
33,883	+		MPMX19_06562	0.84	-1.0
33,883	+		MPMX19_06562	0.84	-0.2
33,883	+		MPMX19_06562	0.84	-0.9
33,883	+		MPMX19_06562	0.84	+0.9
33,883	+		MPMX19_06562	0.84	-0.1
33,883	+		MPMX19_06562	0.84	+0.1
33,883	+		MPMX19_06562	0.84	-1.1
33,883	+		MPMX19_06562	0.84	-0.5
33,884	-		MPMX19_06562	0.84	-1.0
33,884	-		MPMX19_06562	0.84	-2.5
33,884	-		MPMX19_06562	0.84	-0.6
33,884	-		MPMX19_06562	0.84	-1.8
33,884	-		MPMX19_06562	0.84	-0.4
33,884	-		MPMX19_06562	0.84	-0.3
33,937	+		MPMX19_06562	0.86	-0.7
33,937	+		MPMX19_06562	0.86	-0.2
33,937	+		MPMX19_06562	0.86	+0.8
33,937	+		MPMX19_06562	0.86	-0.6
33,937	+		MPMX19_06562	0.86	-0.4
33,937	+		MPMX19_06562	0.86	-1.1
33,937	+		MPMX19_06562	0.86	-0.6
33,937	+		MPMX19_06562	0.86	-1.3
33,937	+		MPMX19_06562	0.86	-0.3
33,937	+		MPMX19_06562	0.86	-0.1
33,937	+		MPMX19_06562	0.86	-1.4
33,937	+		MPMX19_06562	0.86	-0.1
33,937	+		MPMX19_06562	0.86	-1.0
33,937	+		MPMX19_06562	0.86	-1.4
33,937	+		MPMX19_06562	0.86	+0.6
33,937	+		MPMX19_06562	0.86	+0.6
33,937	+		MPMX19_06562	0.86	+0.2
33,937	+		MPMX19_06562	0.86	-0.3
33,937	+		MPMX19_06562	0.86	-1.3
33,937	+		MPMX19_06562	0.86	+0.5
33,937	+		MPMX19_06562	0.86	-0.0
33,937	+		MPMX19_06562	0.86	+0.3
33,937	+		MPMX19_06562	0.86	-0.6
33,937	+		MPMX19_06562	0.86	-0.5
33,937	+		MPMX19_06562	0.86	+0.1
33,937	+		MPMX19_06562	0.86	+1.0
33,937	+		MPMX19_06562	0.86	+0.6
33,937	+		MPMX19_06562	0.86	-1.4
33,937	+		MPMX19_06562	0.86	+0.1
33,937	+		MPMX19_06562	0.86	-0.4
33,937	+		MPMX19_06562	0.86	+0.4
33,937	+		MPMX19_06562	0.86	-0.4
33,937	+		MPMX19_06562	0.86	-0.5
33,937	+		MPMX19_06562	0.86	-1.7
33,937	+		MPMX19_06562	0.86	-0.5
33,937	+		MPMX19_06562	0.86	-0.0
33,937	+		MPMX19_06562	0.86	+0.9
33,937	+		MPMX19_06562	0.86	-0.4
33,937	+		MPMX19_06562	0.86	-0.3
33,937	+		MPMX19_06562	0.86	-0.7
33,937	+		MPMX19_06562	0.86	-1.1
33,937	+		MPMX19_06562	0.86	+0.7
33,938	-		MPMX19_06562	0.86	-0.6
33,938	-		MPMX19_06562	0.86	+0.1
33,938	-		MPMX19_06562	0.86	-0.4
33,938	-		MPMX19_06562	0.86	-1.1
33,938	-		MPMX19_06562	0.86	-0.5
33,938	-		MPMX19_06562	0.86	-0.1
33,938	-		MPMX19_06562	0.86	-1.1
33,938	-		MPMX19_06562	0.86	-1.0
33,938	-		MPMX19_06562	0.86	-0.3
33,938	-		MPMX19_06562	0.86	-0.7
33,938	-		MPMX19_06562	0.86	+0.3
33,938	-		MPMX19_06562	0.86	+1.1
33,938	-		MPMX19_06562	0.86	-0.8
33,938	-		MPMX19_06562	0.86	-1.3
33,938	-		MPMX19_06562	0.86	+0.2
33,938	-		MPMX19_06562	0.86	-0.6
33,938	-		MPMX19_06562	0.86	-0.1
33,938	-		MPMX19_06562	0.86	-1.0
33,938	-		MPMX19_06562	0.86	-1.0
33,938	-		MPMX19_06562	0.86	+1.0
33,938	-		MPMX19_06562	0.86	-0.5
33,938	-		MPMX19_06562	0.86	+1.4
33,938	-		MPMX19_06562	0.86	-0.1
33,938	-		MPMX19_06562	0.86	-0.7
33,938	-		MPMX19_06562	0.86	-0.2
33,938	-		MPMX19_06562	0.86	+1.3
33,938	-		MPMX19_06562	0.86	+0.7
33,938	-		MPMX19_06562	0.86	+0.7
33,938	-		MPMX19_06562	0.86	+0.2
33,938	-		MPMX19_06562	0.86	+0.4
33,938	-		MPMX19_06562	0.86	-1.3
33,938	-		MPMX19_06562	0.86	-0.6
33,938	-		MPMX19_06562	0.86	+0.1
33,938	-		MPMX19_06562	0.86	+0.0
33,938	-		MPMX19_06562	0.86	-0.6
33,938	-		MPMX19_06562	0.86	-0.8
33,938	-		MPMX19_06562	0.86	+1.4
33,938	-		MPMX19_06562	0.86	-0.2
33,992	-		MPMX19_06562	0.88	-0.1
33,992	-		MPMX19_06562	0.88	-0.1
33,992	-		MPMX19_06562	0.88	+0.4
33,992	-		MPMX19_06562	0.88	+0.2
33,992	-		MPMX19_06562	0.88	-1.3
33,992	-		MPMX19_06562	0.88	-1.1
33,992	-		MPMX19_06562	0.88	-0.2
34,057	+				-0.0
34,057	+				-0.3
34,057	+				-0.2
34,057	+				-0.6
34,057	+				+0.6
34,057	+				+0.3
34,057	+				+1.0
34,057	+				-0.8
34,057	+				-0.8
34,057	+				+0.0
34,057	+				-0.7
34,057	+				-0.6
34,057	+				+0.2
34,057	+				-1.1
34,057	+				-0.4
34,057	+				-1.5
34,058	-				+0.4
34,058	-				+0.2
34,058	-				-1.0
34,058	-				-0.1
34,058	-				-0.8
34,058	-				+0.6
34,058	-				+0.1
34,058	-				+0.8
34,058	-				-0.8
34,058	-				+0.2
34,058	-				+0.7
34,111	+				-0.6
34,111	+				-1.5
34,111	+				-0.9
34,111	+				-2.5
34,111	+				-0.7
34,112	-				+0.4
34,112	-				-1.5
34,112	-				-1.3
34,112	-				-0.5
34,177	+				-1.3
34,177	+				+0.1
34,177	+				-0.9
34,177	+				+0.0
34,177	+				-0.0
34,177	+				+0.0
34,177	+				-0.2
34,177	+				+0.4
34,177	+				-0.0
34,177	+				-1.5
34,177	+				-0.4
34,177	+				-0.7
34,177	+				-1.1
34,177	+				+0.1
34,177	+				-0.7
34,177	+				+0.9
34,177	+				-1.0
34,177	+				-1.3
34,177	+				+0.6
34,177	+				-0.6
34,177	+				-2.1
34,177	+				-0.3
34,177	+				-1.5
34,177	+				+0.7
34,177	+				-0.5
34,177	+				-0.8
34,177	+				-0.6
34,177	+				+1.0
34,177	+				-1.9
34,177	+				-0.1
34,177	+				-0.0
34,177	+				-0.5
34,177	+				-1.0
34,177	+				-3.1
34,177	+				+0.7
34,177	+				-0.2
34,177	+				-0.1
34,177	+				-1.2
34,177	+				-1.9
34,178	-				-0.7
34,178	-				+0.4
34,178	-				+0.3
34,178	-				-0.0
34,178	-				-1.9
34,178	-				-1.7
34,178	-				-1.5
34,178	-				+0.1
34,178	-				-0.7
34,178	-				-1.1
34,178	-				-0.4
34,178	-				-0.7
34,178	-				-0.3
34,178	-				-0.7
34,178	-				+0.1
34,178	-				+0.1
34,178	-				-0.4
34,178	-				-0.6
34,178	-				+0.6
34,178	-				+0.7
34,178	-				-0.4
34,178	-				-0.7
34,178	-				-0.9
34,178	-				+1.4
34,178	-				-1.7
34,178	-				-0.0
34,178	-				-0.6
34,178	-				-0.3
34,178	-				-0.4
34,396	+				-1.5
34,396	+				+1.0
34,397	-				-1.3
34,410	+				-0.7
34,410	+				-0.5
34,411	-				+0.5
34,411	-				-1.0
34,411	-				-0.3
34,411	-				-1.9
34,429	-				-0.5
34,429	-				+1.3
34,594	-		MPMX19_06563	0.14	-1.4
34,750	+		MPMX19_06563	0.31	-1.4
34,750	+		MPMX19_06563	0.31	-1.6
34,750	+		MPMX19_06563	0.31	-0.3
34,750	+		MPMX19_06563	0.31	-1.1
34,750	+		MPMX19_06563	0.31	-0.3
34,750	+		MPMX19_06563	0.31	-2.3
34,750	+		MPMX19_06563	0.31	-0.1
34,750	+		MPMX19_06563	0.31	-2.6
34,750	+		MPMX19_06563	0.31	-0.5
34,750	+		MPMX19_06563	0.31	-1.9
34,750	+		MPMX19_06563	0.31	-2.0
34,751	-		MPMX19_06563	0.31	-0.7
34,751	-		MPMX19_06563	0.31	-1.0
34,751	-		MPMX19_06563	0.31	-0.3
34,751	-		MPMX19_06563	0.31	+0.0
34,751	-		MPMX19_06563	0.31	-0.9
34,751	-		MPMX19_06563	0.31	-1.2
34,751	-		MPMX19_06563	0.31	-0.6
34,751	-		MPMX19_06563	0.31	-0.7
34,751	-		MPMX19_06563	0.31	+0.4
34,751	-		MPMX19_06563	0.31	+0.7
35,317	+				+0.1
35,317	+				+0.3
35,317	+				-0.9
35,317	+				-0.7
35,317	+				-0.9
35,317	+				+0.7
35,317	+				+0.7
35,317	+				+0.5
35,317	+				-0.8
35,317	+				+0.4
35,317	+				+0.1
35,317	+				+1.0
35,317	+				+0.3
35,317	+				-0.5
35,317	+				-1.0
35,318	-				-0.9
35,318	-				-3.2
35,318	-				-0.5
35,318	-				-0.8
35,318	-				+0.9
35,318	-				-0.8
35,318	-				-0.0
35,318	-				-0.6
35,349	+				-0.2
35,350	-				+0.1
35,460	+				-1.5
35,460	+				-0.4
35,461	-				-1.7
35,461	-				-0.6
35,461	-				-0.2
35,461	-				-0.5