Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06348

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06347 and MPMX19_06348 overlap by 1 nucleotidesMPMX19_06348 and MPMX19_06349 are separated by 42 nucleotidesMPMX19_06349 and MPMX19_06350 overlap by 8 nucleotides MPMX19_06347: MPMX19_06347 - Pyruvate synthase subunit PorB, at 112,929 to 113,936 _06347 MPMX19_06348: MPMX19_06348 - NADPH-Fe(3+) oxidoreductase subunit beta, at 113,936 to 115,570 _06348 MPMX19_06349: MPMX19_06349 - NADPH-dependent FMN reductase ArsH, at 115,613 to 116,374 _06349 MPMX19_06350: MPMX19_06350 - Arsenical-resistance protein Acr3, at 116,367 to 117,440 _06350 Position (kb) 113 114 115 116Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 112.950 kb on + strandat 112.950 kb on + strandat 112.951 kb on - strandat 112.977 kb on - strandat 112.977 kb on - strandat 112.977 kb on - strandat 113.092 kb on - strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.379 kb on + strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.380 kb on - strand, within MPMX19_06347at 113.388 kb on + strand, within MPMX19_06347at 113.388 kb on + strand, within MPMX19_06347at 113.388 kb on + strand, within MPMX19_06347at 113.389 kb on - strand, within MPMX19_06347at 113.389 kb on - strand, within MPMX19_06347at 113.389 kb on - strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.403 kb on + strand, within MPMX19_06347at 113.404 kb on - strand, within MPMX19_06347at 113.404 kb on - strand, within MPMX19_06347at 113.404 kb on - strand, within MPMX19_06347at 113.547 kb on + strand, within MPMX19_06347at 113.547 kb on + strand, within MPMX19_06347at 113.548 kb on - strand, within MPMX19_06347at 113.548 kb on - strand, within MPMX19_06347at 113.628 kb on + strand, within MPMX19_06347at 113.628 kb on + strand, within MPMX19_06347at 113.628 kb on + strand, within MPMX19_06347at 113.628 kb on + strand, within MPMX19_06347at 113.628 kb on + strand, within MPMX19_06347at 113.628 kb on + strand, within MPMX19_06347at 113.629 kb on - strand, within MPMX19_06347at 113.629 kb on - strand, within MPMX19_06347at 113.629 kb on - strand, within MPMX19_06347at 113.701 kb on + strand, within MPMX19_06347at 113.702 kb on - strand, within MPMX19_06347at 113.796 kb on + strand, within MPMX19_06347at 113.796 kb on + strand, within MPMX19_06347at 113.796 kb on + strand, within MPMX19_06347at 113.797 kb on - strand, within MPMX19_06347at 113.797 kb on - strand, within MPMX19_06347at 113.904 kb on + strandat 113.905 kb on - strandat 114.023 kb on + strandat 114.023 kb on + strandat 114.023 kb on + strandat 114.024 kb on - strandat 114.110 kb on + strand, within MPMX19_06348at 114.176 kb on + strand, within MPMX19_06348at 114.176 kb on + strand, within MPMX19_06348at 114.177 kb on - strand, within MPMX19_06348at 114.177 kb on - strand, within MPMX19_06348at 114.359 kb on + strand, within MPMX19_06348at 114.446 kb on + strand, within MPMX19_06348at 114.446 kb on + strand, within MPMX19_06348at 114.446 kb on + strand, within MPMX19_06348at 114.446 kb on + strand, within MPMX19_06348at 114.447 kb on - strand, within MPMX19_06348at 114.447 kb on - strand, within MPMX19_06348at 114.447 kb on - strand, within MPMX19_06348at 114.447 kb on - strand, within MPMX19_06348at 114.564 kb on - strand, within MPMX19_06348at 114.717 kb on - strand, within MPMX19_06348at 114.717 kb on - strand, within MPMX19_06348at 114.717 kb on - strand, within MPMX19_06348at 114.792 kb on - strand, within MPMX19_06348at 114.983 kb on - strand, within MPMX19_06348at 115.054 kb on + strand, within MPMX19_06348at 115.054 kb on + strand, within MPMX19_06348at 115.054 kb on + strand, within MPMX19_06348at 115.054 kb on + strand, within MPMX19_06348at 115.055 kb on - strand, within MPMX19_06348at 115.055 kb on - strand, within MPMX19_06348at 115.055 kb on - strand, within MPMX19_06348at 115.055 kb on - strand, within MPMX19_06348at 115.055 kb on - strand, within MPMX19_06348at 115.196 kb on + strand, within MPMX19_06348at 115.196 kb on + strand, within MPMX19_06348at 115.196 kb on + strand, within MPMX19_06348at 115.196 kb on + strand, within MPMX19_06348at 115.196 kb on + strand, within MPMX19_06348at 115.197 kb on - strand, within MPMX19_06348at 115.197 kb on - strand, within MPMX19_06348at 115.197 kb on - strand, within MPMX19_06348at 115.197 kb on - strand, within MPMX19_06348at 115.268 kb on + strand, within MPMX19_06348at 115.268 kb on + strand, within MPMX19_06348at 115.269 kb on - strand, within MPMX19_06348at 115.271 kb on + strand, within MPMX19_06348at 115.271 kb on + strand, within MPMX19_06348at 115.271 kb on + strand, within MPMX19_06348at 115.271 kb on + strand, within MPMX19_06348at 115.271 kb on + strand, within MPMX19_06348at 115.271 kb on + strand, within MPMX19_06348at 115.272 kb on - strand, within MPMX19_06348at 115.490 kb on + strandat 115.568 kb on + strandat 115.568 kb on + strandat 115.569 kb on - strandat 115.569 kb on - strandat 115.569 kb on - strandat 115.580 kb on + strandat 115.580 kb on + strandat 115.580 kb on + strandat 115.580 kb on + strandat 115.580 kb on + strandat 115.581 kb on - strandat 115.581 kb on - strandat 115.614 kb on + strandat 115.702 kb on - strand, within MPMX19_06349at 115.716 kb on + strand, within MPMX19_06349at 115.716 kb on + strand, within MPMX19_06349at 115.717 kb on - strand, within MPMX19_06349at 115.717 kb on - strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.755 kb on - strand, within MPMX19_06349at 115.755 kb on - strand, within MPMX19_06349at 115.755 kb on - strand, within MPMX19_06349at 115.755 kb on - strand, within MPMX19_06349at 115.755 kb on - strand, within MPMX19_06349at 115.755 kb on - strand, within MPMX19_06349at 115.785 kb on + strand, within MPMX19_06349at 115.785 kb on + strand, within MPMX19_06349at 115.785 kb on + strand, within MPMX19_06349at 115.785 kb on + strand, within MPMX19_06349at 115.785 kb on + strand, within MPMX19_06349at 115.786 kb on - strand, within MPMX19_06349at 115.786 kb on - strand, within MPMX19_06349at 115.786 kb on - strand, within MPMX19_06349at 115.786 kb on - strand, within MPMX19_06349at 115.786 kb on - strand, within MPMX19_06349at 115.786 kb on - strand, within MPMX19_06349at 115.788 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.221 kb on - strand, within MPMX19_06349at 116.221 kb on - strand, within MPMX19_06349at 116.221 kb on - strand, within MPMX19_06349at 116.221 kb on - strand, within MPMX19_06349at 116.244 kb on + strand, within MPMX19_06349at 116.244 kb on + strand, within MPMX19_06349at 116.244 kb on + strand, within MPMX19_06349at 116.245 kb on - strand, within MPMX19_06349at 116.319 kb on + strandat 116.319 kb on + strandat 116.319 kb on + strandat 116.320 kb on - strandat 116.320 kb on - strandat 116.320 kb on - strandat 116.320 kb on - strandat 116.320 kb on - strandat 116.320 kb on - strandat 116.389 kb on + strandat 116.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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112,950 + -0.9
112,950 + +0.7
112,951 - -0.2
112,977 - -1.3
112,977 - +1.2
112,977 - -1.0
113,092 - MPMX19_06347 0.16 +0.1
113,379 + MPMX19_06347 0.45 +0.2
113,379 + MPMX19_06347 0.45 +0.6
113,379 + MPMX19_06347 0.45 +0.7
113,379 + MPMX19_06347 0.45 +0.4
113,379 + MPMX19_06347 0.45 -0.2
113,379 + MPMX19_06347 0.45 -0.5
113,379 + MPMX19_06347 0.45 +0.2
113,379 + MPMX19_06347 0.45 -0.6
113,379 + MPMX19_06347 0.45 -0.5
113,379 + MPMX19_06347 0.45 -0.3
113,379 + MPMX19_06347 0.45 -0.6
113,379 + MPMX19_06347 0.45 +0.0
113,380 - MPMX19_06347 0.45 +1.8
113,380 - MPMX19_06347 0.45 -1.0
113,380 - MPMX19_06347 0.45 -1.6
113,380 - MPMX19_06347 0.45 -0.8
113,380 - MPMX19_06347 0.45 +1.4
113,380 - MPMX19_06347 0.45 +0.6
113,380 - MPMX19_06347 0.45 -0.1
113,380 - MPMX19_06347 0.45 -2.1
113,380 - MPMX19_06347 0.45 -0.3
113,380 - MPMX19_06347 0.45 -0.0
113,380 - MPMX19_06347 0.45 -0.4
113,380 - MPMX19_06347 0.45 -1.0
113,380 - MPMX19_06347 0.45 -0.5
113,380 - MPMX19_06347 0.45 -0.5
113,380 - MPMX19_06347 0.45 -0.0
113,380 - MPMX19_06347 0.45 -1.3
113,380 - MPMX19_06347 0.45 -0.2
113,380 - MPMX19_06347 0.45 +1.2
113,380 - MPMX19_06347 0.45 +0.1
113,388 + MPMX19_06347 0.46 +0.8
113,388 + MPMX19_06347 0.46 +0.7
113,388 + MPMX19_06347 0.46 -0.8
113,389 - MPMX19_06347 0.46 +0.3
113,389 - MPMX19_06347 0.46 +0.8
113,389 - MPMX19_06347 0.46 -1.3
113,403 + MPMX19_06347 0.47 -0.1
113,403 + MPMX19_06347 0.47 -0.9
113,403 + MPMX19_06347 0.47 -1.3
113,403 + MPMX19_06347 0.47 -0.8
113,403 + MPMX19_06347 0.47 -1.5
113,403 + MPMX19_06347 0.47 -0.4
113,403 + MPMX19_06347 0.47 +0.2
113,403 + MPMX19_06347 0.47 -1.1
113,403 + MPMX19_06347 0.47 +0.8
113,404 - MPMX19_06347 0.47 +0.1
113,404 - MPMX19_06347 0.47 -0.2
113,404 - MPMX19_06347 0.47 -0.2
113,547 + MPMX19_06347 0.61 -0.9
113,547 + MPMX19_06347 0.61 +0.8
113,548 - MPMX19_06347 0.61 -1.3
113,548 - MPMX19_06347 0.61 +0.3
113,628 + MPMX19_06347 0.69 +0.2
113,628 + MPMX19_06347 0.69 -3.1
113,628 + MPMX19_06347 0.69 -0.8
113,628 + MPMX19_06347 0.69 -0.4
113,628 + MPMX19_06347 0.69 +0.7
113,628 + MPMX19_06347 0.69 -0.3
113,629 - MPMX19_06347 0.69 -0.8
113,629 - MPMX19_06347 0.69 -1.5
113,629 - MPMX19_06347 0.69 -1.3
113,701 + MPMX19_06347 0.77 +1.5
113,702 - MPMX19_06347 0.77 -0.5
113,796 + MPMX19_06347 0.86 -1.2
113,796 + MPMX19_06347 0.86 -0.3
113,796 + MPMX19_06347 0.86 -0.3
113,797 - MPMX19_06347 0.86 -0.4
113,797 - MPMX19_06347 0.86 +0.1
113,904 + -1.0
113,905 - -1.3
114,023 + -1.4
114,023 + +1.2
114,023 + +1.0
114,024 - +0.2
114,110 + MPMX19_06348 0.11 +0.2
114,176 + MPMX19_06348 0.15 -0.3
114,176 + MPMX19_06348 0.15 -0.3
114,177 - MPMX19_06348 0.15 +0.0
114,177 - MPMX19_06348 0.15 -1.3
114,359 + MPMX19_06348 0.26 -1.0
114,446 + MPMX19_06348 0.31 -0.2
114,446 + MPMX19_06348 0.31 +1.3
114,446 + MPMX19_06348 0.31 -2.1
114,446 + MPMX19_06348 0.31 +1.6
114,447 - MPMX19_06348 0.31 -0.1
114,447 - MPMX19_06348 0.31 +0.7
114,447 - MPMX19_06348 0.31 -0.9
114,447 - MPMX19_06348 0.31 +0.1
114,564 - MPMX19_06348 0.38 +1.2
114,717 - MPMX19_06348 0.48 -0.4
114,717 - MPMX19_06348 0.48 -0.0
114,717 - MPMX19_06348 0.48 +0.7
114,792 - MPMX19_06348 0.52 +0.6
114,983 - MPMX19_06348 0.64 +0.3
115,054 + MPMX19_06348 0.68 -0.4
115,054 + MPMX19_06348 0.68 +0.8
115,054 + MPMX19_06348 0.68 +0.2
115,054 + MPMX19_06348 0.68 +0.2
115,055 - MPMX19_06348 0.68 +0.2
115,055 - MPMX19_06348 0.68 -0.8
115,055 - MPMX19_06348 0.68 -0.2
115,055 - MPMX19_06348 0.68 +0.6
115,055 - MPMX19_06348 0.68 +1.8
115,196 + MPMX19_06348 0.77 +1.8
115,196 + MPMX19_06348 0.77 -2.6
115,196 + MPMX19_06348 0.77 +0.5
115,196 + MPMX19_06348 0.77 +0.7
115,196 + MPMX19_06348 0.77 +0.0
115,197 - MPMX19_06348 0.77 +0.4
115,197 - MPMX19_06348 0.77 -0.0
115,197 - MPMX19_06348 0.77 -0.8
115,197 - MPMX19_06348 0.77 +0.2
115,268 + MPMX19_06348 0.81 -1.4
115,268 + MPMX19_06348 0.81 -1.3
115,269 - MPMX19_06348 0.82 +0.2
115,271 + MPMX19_06348 0.82 +1.3
115,271 + MPMX19_06348 0.82 +2.1
115,271 + MPMX19_06348 0.82 -0.7
115,271 + MPMX19_06348 0.82 -1.1
115,271 + MPMX19_06348 0.82 +0.7
115,271 + MPMX19_06348 0.82 +1.1
115,272 - MPMX19_06348 0.82 -2.2
115,490 + +0.0
115,568 + -0.3
115,568 + -0.5
115,569 - +0.7
115,569 - +0.1
115,569 - -0.5
115,580 + -0.7
115,580 + +0.6
115,580 + -0.7
115,580 + +0.2
115,580 + -2.3
115,581 - -0.5
115,581 - -1.6
115,614 + -0.8
115,702 - MPMX19_06349 0.12 -1.1
115,716 + MPMX19_06349 0.14 -0.2
115,716 + MPMX19_06349 0.14 +1.1
115,717 - MPMX19_06349 0.14 -0.2
115,717 - MPMX19_06349 0.14 -0.3
115,754 + MPMX19_06349 0.19 +0.4
115,754 + MPMX19_06349 0.19 -0.3
115,754 + MPMX19_06349 0.19 -0.0
115,754 + MPMX19_06349 0.19 -0.2
115,754 + MPMX19_06349 0.19 -1.0
115,754 + MPMX19_06349 0.19 -0.2
115,754 + MPMX19_06349 0.19 -2.3
115,754 + MPMX19_06349 0.19 -0.7
115,754 + MPMX19_06349 0.19 -2.3
115,754 + MPMX19_06349 0.19 +0.2
115,755 - MPMX19_06349 0.19 -0.0
115,755 - MPMX19_06349 0.19 -0.1
115,755 - MPMX19_06349 0.19 -0.1
115,755 - MPMX19_06349 0.19 -0.5
115,755 - MPMX19_06349 0.19 -0.1
115,755 - MPMX19_06349 0.19 +0.2
115,785 + MPMX19_06349 0.23 -1.3
115,785 + MPMX19_06349 0.23 -1.4
115,785 + MPMX19_06349 0.23 -0.0
115,785 + MPMX19_06349 0.23 +0.5
115,785 + MPMX19_06349 0.23 -0.9
115,786 - MPMX19_06349 0.23 -0.4
115,786 - MPMX19_06349 0.23 -1.0
115,786 - MPMX19_06349 0.23 -1.1
115,786 - MPMX19_06349 0.23 -1.3
115,786 - MPMX19_06349 0.23 +0.1
115,786 - MPMX19_06349 0.23 -1.6
115,788 + MPMX19_06349 0.23 -0.3
116,220 + MPMX19_06349 0.80 +0.4
116,220 + MPMX19_06349 0.80 -1.0
116,220 + MPMX19_06349 0.80 +0.5
116,220 + MPMX19_06349 0.80 +0.4
116,220 + MPMX19_06349 0.80 +0.7
116,220 + MPMX19_06349 0.80 -0.8
116,220 + MPMX19_06349 0.80 -0.5
116,220 + MPMX19_06349 0.80 -0.0
116,221 - MPMX19_06349 0.80 -1.9
116,221 - MPMX19_06349 0.80 +0.4
116,221 - MPMX19_06349 0.80 -1.0
116,221 - MPMX19_06349 0.80 -0.9
116,244 + MPMX19_06349 0.83 -0.6
116,244 + MPMX19_06349 0.83 +0.4
116,244 + MPMX19_06349 0.83 -0.2
116,245 - MPMX19_06349 0.83 -0.2
116,319 + +0.2
116,319 + +0.0
116,319 + -0.8
116,320 - +0.2
116,320 - +0.1
116,320 - -0.4
116,320 - -0.6
116,320 - +0.7
116,320 - -1.0
116,389 + -1.0
116,390 - -0.5

Or see this region's nucleotide sequence