Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06293 and MPMX19_06294 are separated by 434 nucleotides MPMX19_06294 and MPMX19_06295 are separated by 42 nucleotides MPMX19_06295 and MPMX19_06296 are separated by 95 nucleotides MPMX19_06296 and MPMX19_06297 are separated by 236 nucleotides MPMX19_06297 and MPMX19_06298 are separated by 75 nucleotides
MPMX19_06293: MPMX19_06293 - Sensor histidine kinase RcsC, at 57,295 to 61,923
_06293
MPMX19_06294: MPMX19_06294 - hypothetical protein, at 62,358 to 62,468
_06294
MPMX19_06295: MPMX19_06295 - Sensor kinase CckA, at 62,511 to 63,623
_06295
MPMX19_06296: MPMX19_06296 - hypothetical protein, at 63,719 to 63,970
_06296
MPMX19_06297: MPMX19_06297 - hypothetical protein, at 64,207 to 64,494
_06297
MPMX19_06298: MPMX19_06298 - hypothetical protein, at 64,570 to 64,869
_06298
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 61.670 kb on + strand at 61.670 kb on + strand at 61.670 kb on + strand at 61.670 kb on + strand at 61.671 kb on - strand at 61.671 kb on - strand at 61.671 kb on - strand at 61.930 kb on + strand at 61.930 kb on + strand at 61.930 kb on + strand at 61.930 kb on + strand at 61.931 kb on - strand at 61.931 kb on - strand at 61.931 kb on - strand at 61.931 kb on - strand at 61.931 kb on - strand at 61.931 kb on - strand at 61.931 kb on - strand at 61.993 kb on - strand at 61.993 kb on - strand at 62.062 kb on + strand at 62.062 kb on + strand at 62.062 kb on + strand at 62.062 kb on + strand at 62.063 kb on - strand at 62.063 kb on - strand at 62.063 kb on - strand at 62.063 kb on - strand at 62.063 kb on - strand at 62.065 kb on + strand at 62.065 kb on + strand at 62.066 kb on - strand at 62.092 kb on + strand at 62.092 kb on + strand at 62.092 kb on + strand at 62.093 kb on - strand at 62.093 kb on - strand at 62.093 kb on - strand at 62.093 kb on - strand at 62.093 kb on - strand at 62.101 kb on + strand at 62.102 kb on - strand at 62.102 kb on - strand at 62.139 kb on + strand at 62.191 kb on - strand at 62.221 kb on + strand at 62.222 kb on - strand at 62.245 kb on + strand at 62.246 kb on - strand at 62.246 kb on - strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.591 kb on - strand at 62.591 kb on - strand at 62.591 kb on - strand at 63.003 kb on + strand, within MPMX19_06295 at 63.003 kb on + strand, within MPMX19_06295 at 63.003 kb on + strand, within MPMX19_06295 at 63.003 kb on + strand, within MPMX19_06295 at 63.003 kb on + strand, within MPMX19_06295 at 63.003 kb on + strand, within MPMX19_06295 at 63.003 kb on + strand, within MPMX19_06295 at 63.003 kb on + strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.130 kb on - strand, within MPMX19_06295 at 63.130 kb on - strand, within MPMX19_06295 at 63.130 kb on - strand, within MPMX19_06295 at 63.130 kb on - strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.519 kb on + strand at 63.519 kb on + strand at 63.521 kb on + strand at 63.522 kb on - strand at 63.522 kb on - strand at 63.522 kb on - strand at 63.652 kb on + strand at 63.671 kb on - strand at 64.000 kb on + strand at 64.001 kb on - strand at 64.001 kb on - strand at 64.002 kb on + strand at 64.002 kb on + strand at 64.002 kb on + strand at 64.002 kb on + strand at 64.003 kb on - strand at 64.003 kb on - strand at 64.034 kb on - strand at 64.034 kb on - strand at 64.043 kb on + strand at 64.044 kb on - strand at 64.091 kb on - strand at 64.095 kb on + strand at 64.096 kb on - strand at 64.421 kb on + strand, within MPMX19_06297 at 64.422 kb on - strand, within MPMX19_06297 at 64.489 kb on - strand at 64.525 kb on + strand at 64.526 kb on - strand at 64.609 kb on - strand, within MPMX19_06298
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 61,670 + -0.6 61,670 + -0.8 61,670 + +0.3 61,670 + +0.2 61,671 - +0.9 61,671 - -0.8 61,671 - -0.3 61,930 + -1.3 61,930 + +0.3 61,930 + -0.5 61,930 + -0.5 61,931 - -0.6 61,931 - +0.2 61,931 - +0.2 61,931 - -0.4 61,931 - +0.2 61,931 - +0.3 61,931 - -0.5 61,993 - +0.1 61,993 - +1.1 62,062 + -0.3 62,062 + -1.5 62,062 + -0.8 62,062 + +1.1 62,063 - -1.1 62,063 - -1.5 62,063 - +0.6 62,063 - -0.0 62,063 - -1.6 62,065 + -1.6 62,065 + -1.8 62,066 - -0.5 62,092 + -2.6 62,092 + +0.2 62,092 + -1.2 62,093 - -0.5 62,093 - -0.1 62,093 - -1.1 62,093 - +0.2 62,093 - -1.0 62,101 + -1.2 62,102 - -0.3 62,102 - -0.5 62,139 + -0.8 62,191 - -0.2 62,221 + +0.9 62,222 - -1.3 62,245 + +0.3 62,246 - -2.5 62,246 - +0.5 62,590 + +2.6 62,590 + +0.1 62,590 + +0.2 62,590 + +0.0 62,590 + -0.3 62,590 + -0.7 62,590 + -1.5 62,590 + +0.2 62,590 + -2.0 62,591 - -1.0 62,591 - -0.2 62,591 - -0.5 63,003 + MPMX19_06295 0.44 -1.2 63,003 + MPMX19_06295 0.44 -1.2 63,003 + MPMX19_06295 0.44 -1.2 63,003 + MPMX19_06295 0.44 +1.3 63,003 + MPMX19_06295 0.44 -0.9 63,003 + MPMX19_06295 0.44 -1.0 63,003 + MPMX19_06295 0.44 +0.7 63,003 + MPMX19_06295 0.44 -1.6 63,004 - MPMX19_06295 0.44 +0.8 63,004 - MPMX19_06295 0.44 -0.6 63,004 - MPMX19_06295 0.44 -1.3 63,004 - MPMX19_06295 0.44 -0.1 63,004 - MPMX19_06295 0.44 -0.2 63,004 - MPMX19_06295 0.44 -2.1 63,004 - MPMX19_06295 0.44 -0.3 63,004 - MPMX19_06295 0.44 -0.2 63,004 - MPMX19_06295 0.44 -1.5 63,004 - MPMX19_06295 0.44 -1.2 63,004 - MPMX19_06295 0.44 -0.6 63,004 - MPMX19_06295 0.44 +0.1 63,129 + MPMX19_06295 0.56 -0.5 63,129 + MPMX19_06295 0.56 -0.9 63,129 + MPMX19_06295 0.56 -0.2 63,129 + MPMX19_06295 0.56 +0.8 63,129 + MPMX19_06295 0.56 -1.3 63,129 + MPMX19_06295 0.56 -0.3 63,129 + MPMX19_06295 0.56 -1.1 63,129 + MPMX19_06295 0.56 -1.6 63,129 + MPMX19_06295 0.56 +0.7 63,129 + MPMX19_06295 0.56 -2.3 63,129 + MPMX19_06295 0.56 +0.8 63,129 + MPMX19_06295 0.56 -1.0 63,129 + MPMX19_06295 0.56 +0.4 63,129 + MPMX19_06295 0.56 -1.5 63,129 + MPMX19_06295 0.56 -0.8 63,129 + MPMX19_06295 0.56 -1.7 63,130 - MPMX19_06295 0.56 -1.5 63,130 - MPMX19_06295 0.56 -1.3 63,130 - MPMX19_06295 0.56 +0.1 63,130 - MPMX19_06295 0.56 -1.8 63,432 + MPMX19_06295 0.83 -0.6 63,432 + MPMX19_06295 0.83 -0.8 63,432 + MPMX19_06295 0.83 +0.4 63,432 + MPMX19_06295 0.83 +0.8 63,432 + MPMX19_06295 0.83 -2.1 63,432 + MPMX19_06295 0.83 +0.1 63,433 - MPMX19_06295 0.83 +0.8 63,433 - MPMX19_06295 0.83 -0.1 63,433 - MPMX19_06295 0.83 -0.2 63,433 - MPMX19_06295 0.83 -0.8 63,433 - MPMX19_06295 0.83 -1.9 63,433 - MPMX19_06295 0.83 +0.3 63,519 + +1.5 63,519 + +0.0 63,521 + -1.0 63,522 - +0.2 63,522 - -0.5 63,522 - -0.1 63,652 + -0.3 63,671 - -1.0 64,000 + -0.9 64,001 - +0.0 64,001 - -0.3 64,002 + -1.1 64,002 + +1.2 64,002 + -1.3 64,002 + +0.3 64,003 - -1.2 64,003 - -1.5 64,034 - -0.9 64,034 - +1.0 64,043 + -1.0 64,044 - -0.2 64,091 - -0.2 64,095 + +0.8 64,096 - -1.3 64,421 + MPMX19_06297 0.74 -1.2 64,422 - MPMX19_06297 0.75 -1.3 64,489 - +0.2 64,525 + -1.5 64,526 - -1.3 64,609 - MPMX19_06298 0.13 -1.1
Or see this region's nucleotide sequence