Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06236

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06235 and MPMX19_06236 are separated by 175 nucleotidesMPMX19_06236 and MPMX19_06237 overlap by 53 nucleotides MPMX19_06235: MPMX19_06235 - Glycine cleavage system transcriptional activator, at 424,982 to 425,878 _06235 MPMX19_06236: MPMX19_06236 - hypothetical protein, at 426,054 to 426,248 _06236 MPMX19_06237: MPMX19_06237 - hypothetical protein, at 426,196 to 427,155 _06237 Position (kb) 426 427Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 425.324 kb on + strand, within MPMX19_06235at 425.325 kb on - strand, within MPMX19_06235at 425.643 kb on + strand, within MPMX19_06235at 425.643 kb on + strand, within MPMX19_06235at 425.644 kb on - strand, within MPMX19_06235at 425.644 kb on - strand, within MPMX19_06235at 425.644 kb on - strand, within MPMX19_06235at 425.787 kb on - strand, within MPMX19_06235at 425.787 kb on - strand, within MPMX19_06235at 425.787 kb on - strand, within MPMX19_06235at 426.004 kb on + strandat 426.005 kb on - strandat 426.005 kb on - strandat 426.129 kb on + strand, within MPMX19_06236at 426.129 kb on + strand, within MPMX19_06236at 426.129 kb on + strand, within MPMX19_06236at 426.129 kb on + strand, within MPMX19_06236at 426.129 kb on + strand, within MPMX19_06236at 426.129 kb on + strand, within MPMX19_06236at 426.130 kb on - strand, within MPMX19_06236at 426.130 kb on - strand, within MPMX19_06236at 426.130 kb on - strand, within MPMX19_06236at 426.335 kb on + strand, within MPMX19_06237at 426.335 kb on + strand, within MPMX19_06237at 426.380 kb on + strand, within MPMX19_06237at 426.380 kb on + strand, within MPMX19_06237at 426.380 kb on + strand, within MPMX19_06237at 426.381 kb on - strand, within MPMX19_06237at 426.381 kb on - strand, within MPMX19_06237at 426.381 kb on - strand, within MPMX19_06237at 426.381 kb on - strand, within MPMX19_06237at 426.381 kb on - strand, within MPMX19_06237at 426.383 kb on + strand, within MPMX19_06237at 426.383 kb on + strand, within MPMX19_06237at 426.384 kb on - strand, within MPMX19_06237at 426.384 kb on - strand, within MPMX19_06237at 426.384 kb on - strand, within MPMX19_06237at 426.384 kb on - strand, within MPMX19_06237at 426.384 kb on - strand, within MPMX19_06237at 426.425 kb on + strand, within MPMX19_06237at 426.425 kb on + strand, within MPMX19_06237at 426.425 kb on + strand, within MPMX19_06237at 426.425 kb on + strand, within MPMX19_06237at 426.426 kb on - strand, within MPMX19_06237at 426.455 kb on + strand, within MPMX19_06237at 426.455 kb on + strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.558 kb on - strand, within MPMX19_06237at 426.558 kb on - strand, within MPMX19_06237at 426.641 kb on + strand, within MPMX19_06237at 426.642 kb on - strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.109 kb on + strandat 427.110 kb on - strandat 427.110 kb on - strandat 427.110 kb on - strandat 427.110 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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425,324 + MPMX19_06235 0.38 +0.3
425,325 - MPMX19_06235 0.38 +0.5
425,643 + MPMX19_06235 0.74 +0.2
425,643 + MPMX19_06235 0.74 -0.3
425,644 - MPMX19_06235 0.74 -1.7
425,644 - MPMX19_06235 0.74 +2.0
425,644 - MPMX19_06235 0.74 +0.1
425,787 - MPMX19_06235 0.90 -0.9
425,787 - MPMX19_06235 0.90 -0.2
425,787 - MPMX19_06235 0.90 -0.4
426,004 + -0.7
426,005 - -0.5
426,005 - -0.2
426,129 + MPMX19_06236 0.38 -1.5
426,129 + MPMX19_06236 0.38 -1.5
426,129 + MPMX19_06236 0.38 -0.0
426,129 + MPMX19_06236 0.38 +0.6
426,129 + MPMX19_06236 0.38 -2.3
426,129 + MPMX19_06236 0.38 -1.5
426,130 - MPMX19_06236 0.39 -0.6
426,130 - MPMX19_06236 0.39 +0.1
426,130 - MPMX19_06236 0.39 -1.0
426,335 + MPMX19_06237 0.14 +0.9
426,335 + MPMX19_06237 0.14 +0.6
426,380 + MPMX19_06237 0.19 +0.2
426,380 + MPMX19_06237 0.19 -0.7
426,380 + MPMX19_06237 0.19 -0.5
426,381 - MPMX19_06237 0.19 -0.2
426,381 - MPMX19_06237 0.19 +0.0
426,381 - MPMX19_06237 0.19 -0.0
426,381 - MPMX19_06237 0.19 +0.4
426,381 - MPMX19_06237 0.19 +0.5
426,383 + MPMX19_06237 0.19 +0.6
426,383 + MPMX19_06237 0.19 -0.6
426,384 - MPMX19_06237 0.20 +0.8
426,384 - MPMX19_06237 0.20 -0.3
426,384 - MPMX19_06237 0.20 -1.7
426,384 - MPMX19_06237 0.20 -0.2
426,384 - MPMX19_06237 0.20 -1.1
426,425 + MPMX19_06237 0.24 -0.1
426,425 + MPMX19_06237 0.24 +0.8
426,425 + MPMX19_06237 0.24 -0.4
426,425 + MPMX19_06237 0.24 -3.1
426,426 - MPMX19_06237 0.24 -0.8
426,455 + MPMX19_06237 0.27 -1.5
426,455 + MPMX19_06237 0.27 -0.2
426,456 - MPMX19_06237 0.27 -0.0
426,456 - MPMX19_06237 0.27 +0.3
426,456 - MPMX19_06237 0.27 -0.5
426,456 - MPMX19_06237 0.27 +0.5
426,456 - MPMX19_06237 0.27 -1.7
426,456 - MPMX19_06237 0.27 +0.7
426,456 - MPMX19_06237 0.27 +0.3
426,456 - MPMX19_06237 0.27 +1.2
426,456 - MPMX19_06237 0.27 +0.8
426,456 - MPMX19_06237 0.27 +1.9
426,456 - MPMX19_06237 0.27 +0.8
426,456 - MPMX19_06237 0.27 -2.1
426,536 + MPMX19_06237 0.35 +0.8
426,536 + MPMX19_06237 0.35 +0.3
426,536 + MPMX19_06237 0.35 +1.8
426,536 + MPMX19_06237 0.35 -0.5
426,536 + MPMX19_06237 0.35 -0.3
426,537 - MPMX19_06237 0.36 -1.1
426,537 - MPMX19_06237 0.36 -0.4
426,537 - MPMX19_06237 0.36 +1.2
426,537 - MPMX19_06237 0.36 -0.7
426,537 - MPMX19_06237 0.36 -0.4
426,537 - MPMX19_06237 0.36 +0.8
426,537 - MPMX19_06237 0.36 -1.7
426,537 - MPMX19_06237 0.36 -1.0
426,537 - MPMX19_06237 0.36 -1.1
426,537 - MPMX19_06237 0.36 +1.1
426,557 + MPMX19_06237 0.38 -2.3
426,557 + MPMX19_06237 0.38 +0.3
426,557 + MPMX19_06237 0.38 +0.2
426,557 + MPMX19_06237 0.38 +0.5
426,558 - MPMX19_06237 0.38 -0.5
426,558 - MPMX19_06237 0.38 -1.0
426,641 + MPMX19_06237 0.46 -0.5
426,642 - MPMX19_06237 0.46 -2.3
427,058 + MPMX19_06237 0.90 -1.0
427,058 + MPMX19_06237 0.90 -0.1
427,058 + MPMX19_06237 0.90 -0.4
427,058 + MPMX19_06237 0.90 -0.1
427,058 + MPMX19_06237 0.90 +1.1
427,058 + MPMX19_06237 0.90 -1.4
427,058 + MPMX19_06237 0.90 -1.5
427,059 - MPMX19_06237 0.90 +0.1
427,059 - MPMX19_06237 0.90 -0.5
427,059 - MPMX19_06237 0.90 +0.8
427,059 - MPMX19_06237 0.90 -0.5
427,059 - MPMX19_06237 0.90 -0.4
427,059 - MPMX19_06237 0.90 -0.1
427,059 - MPMX19_06237 0.90 -1.2
427,059 - MPMX19_06237 0.90 +0.3
427,059 - MPMX19_06237 0.90 -2.7
427,059 - MPMX19_06237 0.90 -1.4
427,109 + +0.4
427,110 - +0.7
427,110 - +0.8
427,110 - -1.1
427,110 - -0.0

Or see this region's nucleotide sequence