Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05818

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05817 and MPMX19_05818 overlap by 4 nucleotidesMPMX19_05818 and MPMX19_05819 overlap by 4 nucleotides MPMX19_05817: MPMX19_05817 - Argininosuccinate lyase, at 544,676 to 546,124 _05817 MPMX19_05818: MPMX19_05818 - hypothetical protein, at 546,121 to 546,327 _05818 MPMX19_05819: MPMX19_05819 - Diaminopimelate decarboxylase, at 546,324 to 547,619 _05819 Position (kb) 546 547Strain fitness (log2 ratio) -2 -1 0 1at 546.262 kb on + strand, within MPMX19_05818at 546.262 kb on + strand, within MPMX19_05818at 546.262 kb on + strand, within MPMX19_05818

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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546,262 + MPMX19_05818 0.68 -1.7
546,262 + MPMX19_05818 0.68 -1.8
546,262 + MPMX19_05818 0.68 -0.9

Or see this region's nucleotide sequence