Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05739 and MPMX19_05740 overlap by 4 nucleotides MPMX19_05740 and MPMX19_05741 overlap by 1 nucleotides
MPMX19_05739: MPMX19_05739 - Tuberculostearic acid methyltransferase UfaA1, at 455,224 to 456,486
_05739
MPMX19_05740: MPMX19_05740 - hypothetical protein, at 456,483 to 457,316
_05740
MPMX19_05741: MPMX19_05741 - hypothetical protein, at 457,316 to 458,698
_05741
Position (kb) 456
457
458 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 455.532 kb on - strand, within MPMX19_05739 at 455.532 kb on - strand, within MPMX19_05739 at 455.532 kb on - strand, within MPMX19_05739 at 455.618 kb on + strand, within MPMX19_05739 at 455.618 kb on + strand, within MPMX19_05739 at 455.619 kb on - strand, within MPMX19_05739 at 455.619 kb on - strand, within MPMX19_05739 at 455.955 kb on - strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.969 kb on + strand, within MPMX19_05739 at 455.970 kb on - strand, within MPMX19_05739 at 455.970 kb on - strand, within MPMX19_05739 at 455.970 kb on - strand, within MPMX19_05739 at 455.970 kb on - strand, within MPMX19_05739 at 455.970 kb on - strand, within MPMX19_05739 at 455.970 kb on - strand, within MPMX19_05739 at 455.970 kb on - strand, within MPMX19_05739 at 455.970 kb on - strand, within MPMX19_05739 at 455.970 kb on - strand, within MPMX19_05739 at 455.970 kb on - strand, within MPMX19_05739 at 455.970 kb on - strand, within MPMX19_05739 at 455.970 kb on - strand, within MPMX19_05739 at 455.970 kb on - strand, within MPMX19_05739 at 455.970 kb on - strand, within MPMX19_05739 at 455.970 kb on - strand, within MPMX19_05739 at 455.999 kb on + strand, within MPMX19_05739 at 455.999 kb on + strand, within MPMX19_05739 at 456.000 kb on - strand, within MPMX19_05739 at 456.020 kb on + strand, within MPMX19_05739 at 456.021 kb on - strand, within MPMX19_05739 at 456.021 kb on - strand, within MPMX19_05739 at 456.215 kb on + strand, within MPMX19_05739 at 456.215 kb on + strand, within MPMX19_05739 at 456.215 kb on + strand, within MPMX19_05739 at 456.215 kb on + strand, within MPMX19_05739 at 456.215 kb on + strand, within MPMX19_05739 at 456.216 kb on - strand, within MPMX19_05739 at 456.216 kb on - strand, within MPMX19_05739 at 456.216 kb on - strand, within MPMX19_05739 at 456.216 kb on - strand, within MPMX19_05739 at 456.802 kb on + strand, within MPMX19_05740 at 456.802 kb on + strand, within MPMX19_05740 at 456.802 kb on + strand, within MPMX19_05740 at 456.802 kb on + strand, within MPMX19_05740 at 456.803 kb on - strand, within MPMX19_05740 at 456.815 kb on + strand, within MPMX19_05740 at 456.816 kb on - strand, within MPMX19_05740 at 456.835 kb on + strand, within MPMX19_05740 at 456.835 kb on + strand, within MPMX19_05740 at 456.835 kb on + strand, within MPMX19_05740 at 456.835 kb on + strand, within MPMX19_05740 at 456.835 kb on + strand, within MPMX19_05740 at 456.835 kb on + strand, within MPMX19_05740 at 456.835 kb on + strand, within MPMX19_05740 at 456.835 kb on + strand, within MPMX19_05740 at 456.835 kb on + strand, within MPMX19_05740 at 456.835 kb on + strand, within MPMX19_05740 at 456.835 kb on + strand, within MPMX19_05740 at 456.835 kb on + strand, within MPMX19_05740 at 456.835 kb on + strand, within MPMX19_05740 at 456.835 kb on + strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.836 kb on - strand, within MPMX19_05740 at 456.898 kb on + strand, within MPMX19_05740 at 456.899 kb on - strand, within MPMX19_05740 at 456.899 kb on - strand, within MPMX19_05740 at 456.899 kb on - strand, within MPMX19_05740 at 457.088 kb on + strand, within MPMX19_05740 at 457.088 kb on + strand, within MPMX19_05740 at 457.088 kb on + strand, within MPMX19_05740 at 457.088 kb on + strand, within MPMX19_05740 at 457.089 kb on - strand, within MPMX19_05740 at 457.089 kb on - strand, within MPMX19_05740 at 457.089 kb on - strand, within MPMX19_05740 at 457.089 kb on - strand, within MPMX19_05740 at 457.231 kb on + strand, within MPMX19_05740 at 457.285 kb on + strand at 457.285 kb on + strand at 457.285 kb on + strand at 457.285 kb on + strand at 457.285 kb on + strand at 457.285 kb on + strand at 457.285 kb on + strand at 457.285 kb on + strand at 457.285 kb on + strand at 457.285 kb on + strand at 457.285 kb on + strand at 457.286 kb on - strand at 457.286 kb on - strand at 457.286 kb on - strand at 457.286 kb on - strand at 457.286 kb on - strand at 457.286 kb on - strand at 457.286 kb on - strand at 457.286 kb on - strand at 457.476 kb on + strand, within MPMX19_05741 at 457.476 kb on + strand, within MPMX19_05741 at 457.476 kb on + strand, within MPMX19_05741 at 457.476 kb on + strand, within MPMX19_05741 at 457.477 kb on - strand, within MPMX19_05741 at 457.477 kb on - strand, within MPMX19_05741 at 457.477 kb on - strand, within MPMX19_05741 at 457.569 kb on + strand, within MPMX19_05741 at 457.570 kb on - strand, within MPMX19_05741 at 457.677 kb on + strand, within MPMX19_05741 at 457.677 kb on + strand, within MPMX19_05741 at 457.677 kb on + strand, within MPMX19_05741 at 457.677 kb on + strand, within MPMX19_05741 at 457.677 kb on + strand, within MPMX19_05741 at 457.678 kb on - strand, within MPMX19_05741 at 457.678 kb on - strand, within MPMX19_05741 at 457.678 kb on - strand, within MPMX19_05741 at 457.678 kb on - strand, within MPMX19_05741 at 457.725 kb on + strand, within MPMX19_05741 at 457.725 kb on + strand, within MPMX19_05741 at 457.725 kb on + strand, within MPMX19_05741 at 457.725 kb on + strand, within MPMX19_05741 at 457.725 kb on + strand, within MPMX19_05741 at 457.725 kb on + strand, within MPMX19_05741 at 457.726 kb on - strand, within MPMX19_05741 at 457.726 kb on - strand, within MPMX19_05741 at 457.726 kb on - strand, within MPMX19_05741 at 457.804 kb on - strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.019 kb on + strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.020 kb on - strand, within MPMX19_05741 at 458.289 kb on + strand, within MPMX19_05741 at 458.289 kb on + strand, within MPMX19_05741 at 458.289 kb on + strand, within MPMX19_05741 at 458.289 kb on + strand, within MPMX19_05741 at 458.290 kb on - strand, within MPMX19_05741 at 458.290 kb on - strand, within MPMX19_05741 at 458.290 kb on - strand, within MPMX19_05741
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 455,532 - MPMX19_05739 0.24 -0.2 455,532 - MPMX19_05739 0.24 -1.6 455,532 - MPMX19_05739 0.24 +0.9 455,618 + MPMX19_05739 0.31 -1.5 455,618 + MPMX19_05739 0.31 +0.5 455,619 - MPMX19_05739 0.31 -1.4 455,619 - MPMX19_05739 0.31 -0.1 455,955 - MPMX19_05739 0.58 -0.9 455,969 + MPMX19_05739 0.59 +1.0 455,969 + MPMX19_05739 0.59 -1.6 455,969 + MPMX19_05739 0.59 -0.6 455,969 + MPMX19_05739 0.59 -1.0 455,969 + MPMX19_05739 0.59 +0.2 455,969 + MPMX19_05739 0.59 -0.4 455,969 + MPMX19_05739 0.59 -0.4 455,969 + MPMX19_05739 0.59 -1.2 455,969 + MPMX19_05739 0.59 +0.6 455,969 + MPMX19_05739 0.59 -0.6 455,969 + MPMX19_05739 0.59 +1.0 455,969 + MPMX19_05739 0.59 -0.5 455,969 + MPMX19_05739 0.59 -0.3 455,969 + MPMX19_05739 0.59 +1.4 455,969 + MPMX19_05739 0.59 -1.2 455,969 + MPMX19_05739 0.59 -0.5 455,969 + MPMX19_05739 0.59 +0.2 455,970 - MPMX19_05739 0.59 -0.8 455,970 - MPMX19_05739 0.59 +0.5 455,970 - MPMX19_05739 0.59 +1.0 455,970 - MPMX19_05739 0.59 +0.9 455,970 - MPMX19_05739 0.59 +0.4 455,970 - MPMX19_05739 0.59 +0.0 455,970 - MPMX19_05739 0.59 -0.2 455,970 - MPMX19_05739 0.59 +0.0 455,970 - MPMX19_05739 0.59 +1.5 455,970 - MPMX19_05739 0.59 +1.4 455,970 - MPMX19_05739 0.59 +0.5 455,970 - MPMX19_05739 0.59 +1.2 455,970 - MPMX19_05739 0.59 -1.2 455,970 - MPMX19_05739 0.59 -0.9 455,970 - MPMX19_05739 0.59 -0.6 455,999 + MPMX19_05739 0.61 +1.6 455,999 + MPMX19_05739 0.61 -0.1 456,000 - MPMX19_05739 0.61 +0.1 456,020 + MPMX19_05739 0.63 +0.5 456,021 - MPMX19_05739 0.63 -1.5 456,021 - MPMX19_05739 0.63 -0.5 456,215 + MPMX19_05739 0.78 -0.6 456,215 + MPMX19_05739 0.78 +0.5 456,215 + MPMX19_05739 0.78 -0.2 456,215 + MPMX19_05739 0.78 -0.2 456,215 + MPMX19_05739 0.78 -1.4 456,216 - MPMX19_05739 0.79 +0.4 456,216 - MPMX19_05739 0.79 -1.9 456,216 - MPMX19_05739 0.79 -1.2 456,216 - MPMX19_05739 0.79 +0.4 456,802 + MPMX19_05740 0.38 +1.0 456,802 + MPMX19_05740 0.38 -2.0 456,802 + MPMX19_05740 0.38 -0.6 456,802 + MPMX19_05740 0.38 +0.0 456,803 - MPMX19_05740 0.38 -0.2 456,815 + MPMX19_05740 0.40 +0.0 456,816 - MPMX19_05740 0.40 -1.6 456,835 + MPMX19_05740 0.42 -1.4 456,835 + MPMX19_05740 0.42 -1.7 456,835 + MPMX19_05740 0.42 -0.4 456,835 + MPMX19_05740 0.42 +0.0 456,835 + MPMX19_05740 0.42 +0.2 456,835 + MPMX19_05740 0.42 +0.2 456,835 + MPMX19_05740 0.42 +0.4 456,835 + MPMX19_05740 0.42 -1.2 456,835 + MPMX19_05740 0.42 +0.7 456,835 + MPMX19_05740 0.42 -1.0 456,835 + MPMX19_05740 0.42 +0.2 456,835 + MPMX19_05740 0.42 +0.0 456,835 + MPMX19_05740 0.42 -0.5 456,835 + MPMX19_05740 0.42 -1.8 456,836 - MPMX19_05740 0.42 -0.2 456,836 - MPMX19_05740 0.42 -1.8 456,836 - MPMX19_05740 0.42 -1.8 456,836 - MPMX19_05740 0.42 -0.7 456,836 - MPMX19_05740 0.42 -0.9 456,836 - MPMX19_05740 0.42 +0.3 456,836 - MPMX19_05740 0.42 -0.4 456,836 - MPMX19_05740 0.42 -1.0 456,836 - MPMX19_05740 0.42 +1.0 456,836 - MPMX19_05740 0.42 -0.8 456,836 - MPMX19_05740 0.42 +1.2 456,836 - MPMX19_05740 0.42 +0.8 456,836 - MPMX19_05740 0.42 -0.6 456,836 - MPMX19_05740 0.42 -2.1 456,836 - MPMX19_05740 0.42 -1.3 456,836 - MPMX19_05740 0.42 -1.0 456,836 - MPMX19_05740 0.42 -1.9 456,836 - MPMX19_05740 0.42 -1.2 456,836 - MPMX19_05740 0.42 -1.2 456,836 - MPMX19_05740 0.42 +0.1 456,836 - MPMX19_05740 0.42 +1.0 456,836 - MPMX19_05740 0.42 +0.0 456,836 - MPMX19_05740 0.42 -0.4 456,836 - MPMX19_05740 0.42 -0.0 456,836 - MPMX19_05740 0.42 -0.8 456,898 + MPMX19_05740 0.50 +0.2 456,899 - MPMX19_05740 0.50 -0.6 456,899 - MPMX19_05740 0.50 -0.0 456,899 - MPMX19_05740 0.50 -1.4 457,088 + MPMX19_05740 0.73 -0.9 457,088 + MPMX19_05740 0.73 +0.3 457,088 + MPMX19_05740 0.73 -3.0 457,088 + MPMX19_05740 0.73 -0.1 457,089 - MPMX19_05740 0.73 +0.8 457,089 - MPMX19_05740 0.73 +1.1 457,089 - MPMX19_05740 0.73 -0.0 457,089 - MPMX19_05740 0.73 -1.3 457,231 + MPMX19_05740 0.90 +1.8 457,285 + +0.2 457,285 + +0.8 457,285 + -1.0 457,285 + -0.7 457,285 + +0.4 457,285 + +0.0 457,285 + -0.1 457,285 + -0.0 457,285 + +1.4 457,285 + +0.4 457,285 + -0.6 457,286 - -1.4 457,286 - +0.0 457,286 - +0.4 457,286 - -0.6 457,286 - -1.3 457,286 - +1.0 457,286 - -0.2 457,286 - -0.2 457,476 + MPMX19_05741 0.12 +1.2 457,476 + MPMX19_05741 0.12 -0.0 457,476 + MPMX19_05741 0.12 -0.4 457,476 + MPMX19_05741 0.12 +0.5 457,477 - MPMX19_05741 0.12 +0.6 457,477 - MPMX19_05741 0.12 -1.7 457,477 - MPMX19_05741 0.12 -2.6 457,569 + MPMX19_05741 0.18 -0.6 457,570 - MPMX19_05741 0.18 +1.4 457,677 + MPMX19_05741 0.26 -1.0 457,677 + MPMX19_05741 0.26 -0.9 457,677 + MPMX19_05741 0.26 -0.2 457,677 + MPMX19_05741 0.26 -0.8 457,677 + MPMX19_05741 0.26 -0.7 457,678 - MPMX19_05741 0.26 -1.4 457,678 - MPMX19_05741 0.26 +0.8 457,678 - MPMX19_05741 0.26 -0.6 457,678 - MPMX19_05741 0.26 +1.1 457,725 + MPMX19_05741 0.30 +0.9 457,725 + MPMX19_05741 0.30 -1.0 457,725 + MPMX19_05741 0.30 -1.2 457,725 + MPMX19_05741 0.30 +0.5 457,725 + MPMX19_05741 0.30 -0.9 457,725 + MPMX19_05741 0.30 +0.1 457,726 - MPMX19_05741 0.30 -0.3 457,726 - MPMX19_05741 0.30 -1.7 457,726 - MPMX19_05741 0.30 +0.4 457,804 - MPMX19_05741 0.35 -0.5 458,019 + MPMX19_05741 0.51 -0.6 458,019 + MPMX19_05741 0.51 -1.9 458,019 + MPMX19_05741 0.51 -1.7 458,019 + MPMX19_05741 0.51 +0.1 458,019 + MPMX19_05741 0.51 -0.5 458,019 + MPMX19_05741 0.51 -0.7 458,019 + MPMX19_05741 0.51 -0.6 458,019 + MPMX19_05741 0.51 -0.4 458,019 + MPMX19_05741 0.51 +0.0 458,019 + MPMX19_05741 0.51 -1.1 458,019 + MPMX19_05741 0.51 -1.0 458,019 + MPMX19_05741 0.51 -0.4 458,019 + MPMX19_05741 0.51 -0.5 458,019 + MPMX19_05741 0.51 -1.9 458,019 + MPMX19_05741 0.51 -0.5 458,019 + MPMX19_05741 0.51 -1.1 458,019 + MPMX19_05741 0.51 -1.2 458,019 + MPMX19_05741 0.51 -0.4 458,019 + MPMX19_05741 0.51 +0.5 458,019 + MPMX19_05741 0.51 -1.4 458,019 + MPMX19_05741 0.51 -0.8 458,019 + MPMX19_05741 0.51 -1.0 458,019 + MPMX19_05741 0.51 +0.1 458,019 + MPMX19_05741 0.51 -0.8 458,019 + MPMX19_05741 0.51 -0.8 458,019 + MPMX19_05741 0.51 -0.2 458,019 + MPMX19_05741 0.51 -2.1 458,019 + MPMX19_05741 0.51 +0.2 458,019 + MPMX19_05741 0.51 -0.7 458,019 + MPMX19_05741 0.51 -2.1 458,019 + MPMX19_05741 0.51 -0.4 458,019 + MPMX19_05741 0.51 -0.2 458,020 - MPMX19_05741 0.51 -0.1 458,020 - MPMX19_05741 0.51 -0.4 458,020 - MPMX19_05741 0.51 -0.5 458,020 - MPMX19_05741 0.51 -1.3 458,020 - MPMX19_05741 0.51 -0.3 458,020 - MPMX19_05741 0.51 +0.9 458,020 - MPMX19_05741 0.51 +1.2 458,020 - MPMX19_05741 0.51 +0.4 458,020 - MPMX19_05741 0.51 +0.9 458,020 - MPMX19_05741 0.51 -0.2 458,020 - MPMX19_05741 0.51 -0.0 458,020 - MPMX19_05741 0.51 -1.0 458,020 - MPMX19_05741 0.51 +0.4 458,020 - MPMX19_05741 0.51 -1.4 458,020 - MPMX19_05741 0.51 -0.8 458,020 - MPMX19_05741 0.51 +0.6 458,020 - MPMX19_05741 0.51 -0.4 458,020 - MPMX19_05741 0.51 +0.2 458,289 + MPMX19_05741 0.70 -0.0 458,289 + MPMX19_05741 0.70 -0.5 458,289 + MPMX19_05741 0.70 -0.5 458,289 + MPMX19_05741 0.70 +0.4 458,290 - MPMX19_05741 0.70 -0.3 458,290 - MPMX19_05741 0.70 +0.0 458,290 - MPMX19_05741 0.70 +0.2
Or see this region's nucleotide sequence