Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05735 and MPMX19_05736 are separated by 76 nucleotides MPMX19_05736 and MPMX19_05737 overlap by 4 nucleotides MPMX19_05737 and MPMX19_05738 overlap by 38 nucleotides MPMX19_05738 and MPMX19_05739 are separated by 16 nucleotides
MPMX19_05735: MPMX19_05735 - hypothetical protein, at 453,173 to 453,427
_05735
MPMX19_05736: MPMX19_05736 - hypothetical protein, at 453,504 to 454,274
_05736
MPMX19_05737: MPMX19_05737 - hypothetical protein, at 454,271 to 454,717
_05737
MPMX19_05738: MPMX19_05738 - hypothetical protein, at 454,680 to 455,207
_05738
MPMX19_05739: MPMX19_05739 - Tuberculostearic acid methyltransferase UfaA1, at 455,224 to 456,486
_05739
Position (kb) 454
455 Strain fitness (log2 ratio) -2
-1
0
1
2 at 453.450 kb on - strand at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.849 kb on + strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.850 kb on - strand, within MPMX19_05736 at 453.851 kb on + strand, within MPMX19_05736 at 453.851 kb on + strand, within MPMX19_05736 at 453.851 kb on + strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.852 kb on - strand, within MPMX19_05736 at 453.969 kb on + strand, within MPMX19_05736 at 453.969 kb on + strand, within MPMX19_05736 at 453.969 kb on + strand, within MPMX19_05736 at 453.970 kb on - strand, within MPMX19_05736 at 454.239 kb on + strand at 454.239 kb on + strand at 454.239 kb on + strand at 454.239 kb on + strand at 454.239 kb on + strand at 454.239 kb on + strand at 454.239 kb on + strand at 454.240 kb on - strand at 454.240 kb on - strand at 454.240 kb on - strand at 454.240 kb on - strand at 454.240 kb on - strand at 454.240 kb on - strand at 454.643 kb on + strand, within MPMX19_05737 at 454.643 kb on + strand, within MPMX19_05737 at 454.643 kb on + strand, within MPMX19_05737 at 454.643 kb on + strand, within MPMX19_05737 at 454.643 kb on + strand, within MPMX19_05737 at 454.643 kb on + strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.644 kb on - strand, within MPMX19_05737 at 454.681 kb on + strand at 454.681 kb on + strand at 454.682 kb on - strand at 454.682 kb on - strand at 454.682 kb on - strand at 454.682 kb on - strand at 454.792 kb on + strand, within MPMX19_05738 at 454.793 kb on - strand, within MPMX19_05738 at 454.793 kb on - strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.894 kb on + strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.895 kb on - strand, within MPMX19_05738 at 454.966 kb on + strand, within MPMX19_05738 at 454.966 kb on + strand, within MPMX19_05738 at 454.966 kb on + strand, within MPMX19_05738 at 454.966 kb on + strand, within MPMX19_05738 at 454.966 kb on + strand, within MPMX19_05738 at 454.966 kb on + strand, within MPMX19_05738 at 454.967 kb on - strand, within MPMX19_05738 at 454.967 kb on - strand, within MPMX19_05738 at 454.967 kb on - strand, within MPMX19_05738 at 454.967 kb on - strand, within MPMX19_05738 at 455.027 kb on - strand, within MPMX19_05738 at 455.155 kb on + strand at 455.155 kb on + strand at 455.156 kb on - strand at 455.156 kb on - strand at 455.156 kb on - strand at 455.156 kb on - strand at 455.288 kb on + strand at 455.288 kb on + strand at 455.288 kb on + strand at 455.288 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.297 kb on + strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.298 kb on - strand at 455.300 kb on + strand at 455.300 kb on + strand at 455.300 kb on + strand at 455.300 kb on + strand at 455.301 kb on - strand at 455.301 kb on - strand at 455.399 kb on + strand, within MPMX19_05739 at 455.399 kb on + strand, within MPMX19_05739 at 455.399 kb on + strand, within MPMX19_05739 at 455.399 kb on + strand, within MPMX19_05739 at 455.399 kb on + strand, within MPMX19_05739 at 455.400 kb on - strand, within MPMX19_05739 at 455.400 kb on - strand, within MPMX19_05739 at 455.400 kb on - strand, within MPMX19_05739 at 455.400 kb on - strand, within MPMX19_05739 at 455.400 kb on - strand, within MPMX19_05739 at 455.400 kb on - strand, within MPMX19_05739 at 455.400 kb on - strand, within MPMX19_05739 at 455.532 kb on - strand, within MPMX19_05739 at 455.532 kb on - strand, within MPMX19_05739 at 455.532 kb on - strand, within MPMX19_05739 at 455.618 kb on + strand, within MPMX19_05739 at 455.618 kb on + strand, within MPMX19_05739 at 455.619 kb on - strand, within MPMX19_05739 at 455.619 kb on - strand, within MPMX19_05739
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 453,450 - -2.4 453,849 + MPMX19_05736 0.45 -0.6 453,849 + MPMX19_05736 0.45 +1.3 453,849 + MPMX19_05736 0.45 -0.8 453,849 + MPMX19_05736 0.45 +0.6 453,849 + MPMX19_05736 0.45 -2.5 453,849 + MPMX19_05736 0.45 -0.6 453,849 + MPMX19_05736 0.45 +0.8 453,849 + MPMX19_05736 0.45 -0.0 453,849 + MPMX19_05736 0.45 -0.7 453,849 + MPMX19_05736 0.45 +0.4 453,849 + MPMX19_05736 0.45 -0.9 453,849 + MPMX19_05736 0.45 -0.6 453,849 + MPMX19_05736 0.45 -0.6 453,849 + MPMX19_05736 0.45 -0.9 453,849 + MPMX19_05736 0.45 -0.3 453,849 + MPMX19_05736 0.45 +0.2 453,849 + MPMX19_05736 0.45 -0.8 453,849 + MPMX19_05736 0.45 +0.4 453,849 + MPMX19_05736 0.45 -0.4 453,849 + MPMX19_05736 0.45 -0.8 453,849 + MPMX19_05736 0.45 +0.4 453,849 + MPMX19_05736 0.45 -2.1 453,849 + MPMX19_05736 0.45 +0.9 453,849 + MPMX19_05736 0.45 +0.4 453,849 + MPMX19_05736 0.45 +1.2 453,849 + MPMX19_05736 0.45 -1.6 453,849 + MPMX19_05736 0.45 -0.9 453,849 + MPMX19_05736 0.45 -1.2 453,849 + MPMX19_05736 0.45 -0.4 453,849 + MPMX19_05736 0.45 -0.0 453,849 + MPMX19_05736 0.45 -0.1 453,849 + MPMX19_05736 0.45 -0.8 453,849 + MPMX19_05736 0.45 -0.6 453,849 + MPMX19_05736 0.45 +0.3 453,849 + MPMX19_05736 0.45 -1.2 453,849 + MPMX19_05736 0.45 +1.3 453,849 + MPMX19_05736 0.45 +0.1 453,849 + MPMX19_05736 0.45 -1.1 453,849 + MPMX19_05736 0.45 +0.8 453,849 + MPMX19_05736 0.45 +0.9 453,850 - MPMX19_05736 0.45 -0.8 453,850 - MPMX19_05736 0.45 +0.4 453,850 - MPMX19_05736 0.45 +0.5 453,850 - MPMX19_05736 0.45 -0.8 453,850 - MPMX19_05736 0.45 +1.0 453,850 - MPMX19_05736 0.45 -1.1 453,850 - MPMX19_05736 0.45 +0.1 453,850 - MPMX19_05736 0.45 -0.4 453,850 - MPMX19_05736 0.45 -0.2 453,850 - MPMX19_05736 0.45 -0.0 453,850 - MPMX19_05736 0.45 +1.0 453,850 - MPMX19_05736 0.45 -1.2 453,850 - MPMX19_05736 0.45 +0.2 453,850 - MPMX19_05736 0.45 -0.4 453,850 - MPMX19_05736 0.45 -1.9 453,850 - MPMX19_05736 0.45 -1.6 453,850 - MPMX19_05736 0.45 +0.5 453,850 - MPMX19_05736 0.45 -1.4 453,850 - MPMX19_05736 0.45 +1.2 453,850 - MPMX19_05736 0.45 -2.3 453,850 - MPMX19_05736 0.45 -0.6 453,850 - MPMX19_05736 0.45 -0.8 453,850 - MPMX19_05736 0.45 -1.3 453,850 - MPMX19_05736 0.45 -1.4 453,850 - MPMX19_05736 0.45 +0.0 453,850 - MPMX19_05736 0.45 +0.1 453,850 - MPMX19_05736 0.45 -0.4 453,850 - MPMX19_05736 0.45 -1.4 453,850 - MPMX19_05736 0.45 -0.4 453,850 - MPMX19_05736 0.45 -1.2 453,850 - MPMX19_05736 0.45 +0.2 453,850 - MPMX19_05736 0.45 -0.0 453,850 - MPMX19_05736 0.45 -0.8 453,850 - MPMX19_05736 0.45 -0.6 453,850 - MPMX19_05736 0.45 +0.6 453,850 - MPMX19_05736 0.45 +0.4 453,850 - MPMX19_05736 0.45 +0.3 453,850 - MPMX19_05736 0.45 -1.5 453,850 - MPMX19_05736 0.45 +0.5 453,850 - MPMX19_05736 0.45 +0.8 453,850 - MPMX19_05736 0.45 +0.5 453,850 - MPMX19_05736 0.45 -0.5 453,850 - MPMX19_05736 0.45 -0.6 453,851 + MPMX19_05736 0.45 -0.2 453,851 + MPMX19_05736 0.45 +0.5 453,851 + MPMX19_05736 0.45 +0.8 453,852 - MPMX19_05736 0.45 -1.0 453,852 - MPMX19_05736 0.45 +2.6 453,852 - MPMX19_05736 0.45 +1.3 453,852 - MPMX19_05736 0.45 -0.5 453,852 - MPMX19_05736 0.45 +1.1 453,852 - MPMX19_05736 0.45 -1.4 453,852 - MPMX19_05736 0.45 +0.2 453,852 - MPMX19_05736 0.45 -0.2 453,852 - MPMX19_05736 0.45 +0.2 453,969 + MPMX19_05736 0.60 +0.1 453,969 + MPMX19_05736 0.60 -0.8 453,969 + MPMX19_05736 0.60 -0.2 453,970 - MPMX19_05736 0.60 -1.0 454,239 + -0.5 454,239 + +0.8 454,239 + +0.3 454,239 + +1.1 454,239 + +0.3 454,239 + +1.0 454,239 + -0.4 454,240 - -1.0 454,240 - +0.4 454,240 - -0.4 454,240 - -0.8 454,240 - -1.0 454,240 - -0.0 454,643 + MPMX19_05737 0.83 -1.1 454,643 + MPMX19_05737 0.83 +0.1 454,643 + MPMX19_05737 0.83 -1.1 454,643 + MPMX19_05737 0.83 +0.4 454,643 + MPMX19_05737 0.83 +0.2 454,643 + MPMX19_05737 0.83 -1.0 454,644 - MPMX19_05737 0.83 -1.2 454,644 - MPMX19_05737 0.83 -1.0 454,644 - MPMX19_05737 0.83 +0.4 454,644 - MPMX19_05737 0.83 -1.7 454,644 - MPMX19_05737 0.83 -0.1 454,644 - MPMX19_05737 0.83 -0.0 454,644 - MPMX19_05737 0.83 -1.0 454,644 - MPMX19_05737 0.83 -0.2 454,644 - MPMX19_05737 0.83 -0.2 454,644 - MPMX19_05737 0.83 +1.0 454,644 - MPMX19_05737 0.83 +1.4 454,644 - MPMX19_05737 0.83 +0.2 454,681 + +0.2 454,681 + -0.2 454,682 - -0.0 454,682 - -0.3 454,682 - -0.4 454,682 - +0.9 454,792 + MPMX19_05738 0.21 +0.1 454,793 - MPMX19_05738 0.21 +0.4 454,793 - MPMX19_05738 0.21 -0.4 454,894 + MPMX19_05738 0.41 +1.4 454,894 + MPMX19_05738 0.41 +0.3 454,894 + MPMX19_05738 0.41 -1.1 454,894 + MPMX19_05738 0.41 -1.2 454,894 + MPMX19_05738 0.41 +0.4 454,894 + MPMX19_05738 0.41 +1.8 454,894 + MPMX19_05738 0.41 -0.7 454,894 + MPMX19_05738 0.41 -0.2 454,894 + MPMX19_05738 0.41 -0.2 454,894 + MPMX19_05738 0.41 -1.7 454,894 + MPMX19_05738 0.41 +1.8 454,895 - MPMX19_05738 0.41 -0.4 454,895 - MPMX19_05738 0.41 -0.6 454,895 - MPMX19_05738 0.41 +1.8 454,895 - MPMX19_05738 0.41 -0.8 454,895 - MPMX19_05738 0.41 +0.2 454,895 - MPMX19_05738 0.41 -0.2 454,895 - MPMX19_05738 0.41 -1.2 454,895 - MPMX19_05738 0.41 +0.0 454,895 - MPMX19_05738 0.41 +0.0 454,895 - MPMX19_05738 0.41 -1.2 454,966 + MPMX19_05738 0.54 +0.8 454,966 + MPMX19_05738 0.54 +0.9 454,966 + MPMX19_05738 0.54 -0.4 454,966 + MPMX19_05738 0.54 -0.4 454,966 + MPMX19_05738 0.54 +0.0 454,966 + MPMX19_05738 0.54 -0.0 454,967 - MPMX19_05738 0.54 -0.9 454,967 - MPMX19_05738 0.54 +0.2 454,967 - MPMX19_05738 0.54 +0.6 454,967 - MPMX19_05738 0.54 +0.2 455,027 - MPMX19_05738 0.66 -1.4 455,155 + +1.0 455,155 + -0.6 455,156 - +0.9 455,156 - -1.0 455,156 - +0.2 455,156 - +0.1 455,288 + -0.8 455,288 + -0.4 455,288 + -1.5 455,288 + +1.2 455,297 + -0.2 455,297 + +0.6 455,297 + -1.4 455,297 + +0.0 455,297 + -0.2 455,297 + -2.2 455,297 + -0.2 455,297 + -0.6 455,297 + -1.0 455,297 + -0.7 455,297 + -0.7 455,297 + +0.0 455,297 + -0.6 455,297 + -0.6 455,297 + -0.0 455,297 + -0.0 455,298 - +1.0 455,298 - +0.2 455,298 - -1.6 455,298 - -0.6 455,298 - -0.4 455,298 - -0.2 455,298 - +0.8 455,298 - -0.5 455,298 - -1.2 455,300 + +0.2 455,300 + +0.1 455,300 + -1.2 455,300 + -1.7 455,301 - -0.8 455,301 - -2.0 455,399 + MPMX19_05739 0.14 -1.7 455,399 + MPMX19_05739 0.14 +1.0 455,399 + MPMX19_05739 0.14 -0.2 455,399 + MPMX19_05739 0.14 +0.2 455,399 + MPMX19_05739 0.14 -0.3 455,400 - MPMX19_05739 0.14 -0.4 455,400 - MPMX19_05739 0.14 -0.5 455,400 - MPMX19_05739 0.14 +1.1 455,400 - MPMX19_05739 0.14 +0.4 455,400 - MPMX19_05739 0.14 -0.3 455,400 - MPMX19_05739 0.14 +1.4 455,400 - MPMX19_05739 0.14 +1.0 455,532 - MPMX19_05739 0.24 -0.2 455,532 - MPMX19_05739 0.24 -1.6 455,532 - MPMX19_05739 0.24 +0.9 455,618 + MPMX19_05739 0.31 -1.5 455,618 + MPMX19_05739 0.31 +0.5 455,619 - MPMX19_05739 0.31 -1.4 455,619 - MPMX19_05739 0.31 -0.1
Or see this region's nucleotide sequence