Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05677 and MPMX19_05678 are separated by 59 nucleotides MPMX19_05678 and MPMX19_05679 overlap by 4 nucleotides MPMX19_05679 and MPMX19_05680 are separated by 268 nucleotides
MPMX19_05677: MPMX19_05677 - hypothetical protein, at 395,727 to 396,317
_05677
MPMX19_05678: MPMX19_05678 - hypothetical protein, at 396,377 to 396,811
_05678
MPMX19_05679: MPMX19_05679 - Flagellum-specific ATP synthase, at 396,808 to 398,145
_05679
MPMX19_05680: MPMX19_05680 - Cell cycle response regulator CtrA, at 398,414 to 399,154
_05680
Position (kb) 396
397
398
399 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 395.896 kb on - strand, within MPMX19_05677 at 395.896 kb on - strand, within MPMX19_05677 at 395.896 kb on - strand, within MPMX19_05677 at 395.925 kb on + strand, within MPMX19_05677 at 395.925 kb on + strand, within MPMX19_05677 at 395.925 kb on + strand, within MPMX19_05677 at 395.926 kb on - strand, within MPMX19_05677 at 395.926 kb on - strand, within MPMX19_05677 at 395.926 kb on - strand, within MPMX19_05677 at 395.926 kb on - strand, within MPMX19_05677 at 395.991 kb on + strand, within MPMX19_05677 at 396.102 kb on + strand, within MPMX19_05677 at 396.103 kb on - strand, within MPMX19_05677 at 396.103 kb on - strand, within MPMX19_05677 at 396.265 kb on + strand at 396.265 kb on + strand at 396.266 kb on - strand at 396.266 kb on - strand at 396.266 kb on - strand at 396.266 kb on - strand at 396.273 kb on + strand at 396.273 kb on + strand at 396.273 kb on + strand at 396.273 kb on + strand at 396.273 kb on + strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.371 kb on + strand at 396.372 kb on - strand at 396.372 kb on - strand at 396.372 kb on - strand at 396.372 kb on - strand at 396.372 kb on - strand at 396.510 kb on + strand, within MPMX19_05678 at 396.510 kb on + strand, within MPMX19_05678 at 396.511 kb on - strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.736 kb on + strand, within MPMX19_05678 at 396.736 kb on + strand, within MPMX19_05678 at 396.736 kb on + strand, within MPMX19_05678 at 396.736 kb on + strand, within MPMX19_05678 at 396.736 kb on + strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.959 kb on + strand, within MPMX19_05679 at 396.960 kb on - strand, within MPMX19_05679 at 396.960 kb on - strand, within MPMX19_05679 at 396.995 kb on + strand, within MPMX19_05679 at 396.995 kb on + strand, within MPMX19_05679 at 396.995 kb on + strand, within MPMX19_05679 at 396.995 kb on + strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 397.298 kb on + strand, within MPMX19_05679 at 397.298 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 398.155 kb on - strand at 398.199 kb on + strand at 398.199 kb on + strand at 398.199 kb on + strand at 398.199 kb on + strand at 398.200 kb on - strand at 398.200 kb on - strand at 398.202 kb on + strand at 398.202 kb on + strand at 398.202 kb on + strand at 398.202 kb on + strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.203 kb on - strand at 398.209 kb on + strand at 398.209 kb on + strand at 398.209 kb on + strand at 398.210 kb on - strand at 398.268 kb on - strand at 398.277 kb on + strand at 398.277 kb on + strand at 398.277 kb on + strand at 398.277 kb on + strand at 398.277 kb on + strand at 398.278 kb on - strand at 398.278 kb on - strand at 398.278 kb on - strand at 398.297 kb on + strand at 398.297 kb on + strand at 398.314 kb on + strand at 398.314 kb on + strand at 398.314 kb on + strand at 398.314 kb on + strand at 398.314 kb on + strand at 398.314 kb on + strand at 398.314 kb on + strand at 398.315 kb on - strand at 398.315 kb on - strand at 398.324 kb on - strand at 398.540 kb on + strand, within MPMX19_05680 at 398.540 kb on + strand, within MPMX19_05680 at 398.591 kb on + strand, within MPMX19_05680 at 398.705 kb on + strand, within MPMX19_05680 at 398.814 kb on + strand, within MPMX19_05680 at 398.814 kb on + strand, within MPMX19_05680 at 398.814 kb on + strand, within MPMX19_05680 at 398.876 kb on + strand, within MPMX19_05680 at 398.877 kb on - strand, within MPMX19_05680 at 398.948 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.068 kb on + strand, within MPMX19_05680 at 399.068 kb on + strand, within MPMX19_05680
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 395,896 - MPMX19_05677 0.29 -1.1 395,896 - MPMX19_05677 0.29 -0.3 395,896 - MPMX19_05677 0.29 -0.3 395,925 + MPMX19_05677 0.34 +0.8 395,925 + MPMX19_05677 0.34 +0.3 395,925 + MPMX19_05677 0.34 -0.5 395,926 - MPMX19_05677 0.34 -1.5 395,926 - MPMX19_05677 0.34 +0.5 395,926 - MPMX19_05677 0.34 +0.0 395,926 - MPMX19_05677 0.34 -1.4 395,991 + MPMX19_05677 0.45 -0.6 396,102 + MPMX19_05677 0.63 -0.4 396,103 - MPMX19_05677 0.64 +0.1 396,103 - MPMX19_05677 0.64 -3.0 396,265 + -0.8 396,265 + -0.7 396,266 - +0.4 396,266 - -0.0 396,266 - +1.2 396,266 - -1.5 396,273 + +1.1 396,273 + -1.1 396,273 + -1.1 396,273 + -1.2 396,273 + +0.6 396,274 - +0.0 396,274 - +0.1 396,274 - -2.7 396,274 - +0.6 396,274 - -1.5 396,274 - -0.4 396,274 - -0.4 396,274 - +1.5 396,274 - +1.1 396,274 - +0.4 396,274 - +0.7 396,274 - +0.4 396,274 - +0.8 396,274 - -1.9 396,371 + -1.5 396,372 - -0.2 396,372 - -1.1 396,372 - -0.7 396,372 - -0.2 396,372 - -0.1 396,510 + MPMX19_05678 0.31 -1.2 396,510 + MPMX19_05678 0.31 +0.0 396,511 - MPMX19_05678 0.31 -1.0 396,636 + MPMX19_05678 0.60 -1.7 396,636 + MPMX19_05678 0.60 -1.3 396,636 + MPMX19_05678 0.60 -1.4 396,636 + MPMX19_05678 0.60 -1.7 396,636 + MPMX19_05678 0.60 -3.8 396,636 + MPMX19_05678 0.60 -2.5 396,636 + MPMX19_05678 0.60 -0.9 396,637 - MPMX19_05678 0.60 -2.2 396,637 - MPMX19_05678 0.60 -2.4 396,637 - MPMX19_05678 0.60 -1.4 396,637 - MPMX19_05678 0.60 -2.0 396,637 - MPMX19_05678 0.60 -0.9 396,637 - MPMX19_05678 0.60 -3.2 396,637 - MPMX19_05678 0.60 -0.3 396,736 + MPMX19_05678 0.83 -2.1 396,736 + MPMX19_05678 0.83 -3.3 396,736 + MPMX19_05678 0.83 -1.7 396,736 + MPMX19_05678 0.83 -1.9 396,736 + MPMX19_05678 0.83 -2.5 396,737 - MPMX19_05678 0.83 -1.4 396,737 - MPMX19_05678 0.83 -2.1 396,737 - MPMX19_05678 0.83 -2.4 396,737 - MPMX19_05678 0.83 +0.1 396,737 - MPMX19_05678 0.83 -2.2 396,737 - MPMX19_05678 0.83 -2.4 396,737 - MPMX19_05678 0.83 -1.5 396,737 - MPMX19_05678 0.83 -1.4 396,851 + -0.3 396,851 + -2.0 396,851 + -1.7 396,851 + -0.8 396,851 + +1.0 396,851 + -1.5 396,851 + -1.0 396,851 + -3.1 396,851 + -2.9 396,851 + -2.2 396,851 + -1.7 396,851 + -1.5 396,851 + -1.2 396,851 + -1.4 396,851 + -2.2 396,851 + -1.0 396,852 - -2.0 396,852 - -1.8 396,852 - -0.8 396,852 - -3.1 396,852 - -2.4 396,852 - -3.0 396,852 - -1.6 396,852 - -2.1 396,852 - -1.0 396,852 - -2.9 396,852 - -2.0 396,852 - -1.0 396,852 - -1.4 396,852 - -0.8 396,852 - -2.1 396,959 + MPMX19_05679 0.11 -2.0 396,960 - MPMX19_05679 0.11 -1.4 396,960 - MPMX19_05679 0.11 -1.5 396,995 + MPMX19_05679 0.14 -2.1 396,995 + MPMX19_05679 0.14 -2.9 396,995 + MPMX19_05679 0.14 -3.3 396,995 + MPMX19_05679 0.14 -2.0 396,996 - MPMX19_05679 0.14 -1.5 396,996 - MPMX19_05679 0.14 -1.2 396,996 - MPMX19_05679 0.14 +0.3 396,996 - MPMX19_05679 0.14 -3.1 396,996 - MPMX19_05679 0.14 -0.8 396,996 - MPMX19_05679 0.14 -1.5 397,298 + MPMX19_05679 0.37 -1.2 397,298 + MPMX19_05679 0.37 -1.1 397,436 + MPMX19_05679 0.47 -2.0 397,436 + MPMX19_05679 0.47 -2.2 397,436 + MPMX19_05679 0.47 -0.1 397,436 + MPMX19_05679 0.47 -2.3 397,436 + MPMX19_05679 0.47 -2.1 397,436 + MPMX19_05679 0.47 -1.7 397,436 + MPMX19_05679 0.47 -1.7 397,436 + MPMX19_05679 0.47 -1.7 397,436 + MPMX19_05679 0.47 -1.4 397,436 + MPMX19_05679 0.47 -0.2 397,436 + MPMX19_05679 0.47 -2.8 397,436 + MPMX19_05679 0.47 -1.4 397,436 + MPMX19_05679 0.47 -1.9 397,436 + MPMX19_05679 0.47 -0.4 397,436 + MPMX19_05679 0.47 -3.0 397,436 + MPMX19_05679 0.47 -1.3 397,436 + MPMX19_05679 0.47 -0.8 397,436 + MPMX19_05679 0.47 -1.0 397,436 + MPMX19_05679 0.47 -1.2 397,436 + MPMX19_05679 0.47 -1.9 397,436 + MPMX19_05679 0.47 -2.7 397,436 + MPMX19_05679 0.47 -1.7 397,436 + MPMX19_05679 0.47 -2.4 397,437 - MPMX19_05679 0.47 -1.7 397,437 - MPMX19_05679 0.47 -1.6 397,437 - MPMX19_05679 0.47 -2.9 397,437 - MPMX19_05679 0.47 -2.7 397,437 - MPMX19_05679 0.47 -2.8 397,437 - MPMX19_05679 0.47 -2.3 397,437 - MPMX19_05679 0.47 -3.6 397,437 - MPMX19_05679 0.47 -2.4 397,437 - MPMX19_05679 0.47 -0.9 397,437 - MPMX19_05679 0.47 -1.2 397,437 - MPMX19_05679 0.47 -1.5 397,437 - MPMX19_05679 0.47 -1.2 397,437 - MPMX19_05679 0.47 -2.3 397,437 - MPMX19_05679 0.47 -1.6 397,437 - MPMX19_05679 0.47 -1.9 398,155 - -0.6 398,199 + +0.6 398,199 + -1.2 398,199 + -1.9 398,199 + -0.1 398,200 - +0.8 398,200 - -0.7 398,202 + -2.5 398,202 + -0.6 398,202 + -0.8 398,202 + -1.7 398,203 - -0.1 398,203 - +1.1 398,203 - +0.2 398,203 - -0.4 398,203 - -1.0 398,203 - -0.1 398,203 - +0.4 398,203 - -0.3 398,203 - -0.1 398,209 + -1.8 398,209 + -2.1 398,209 + -0.8 398,210 - +0.2 398,268 - -0.2 398,277 + -0.3 398,277 + +0.8 398,277 + +1.2 398,277 + -0.4 398,277 + -1.1 398,278 - -0.8 398,278 - -0.4 398,278 - -0.7 398,297 + -1.2 398,297 + -0.6 398,314 + -2.7 398,314 + +0.1 398,314 + -1.0 398,314 + -1.4 398,314 + +1.2 398,314 + -0.5 398,314 + -1.1 398,315 - -2.3 398,315 - -0.5 398,324 - -1.0 398,540 + MPMX19_05680 0.17 -1.2 398,540 + MPMX19_05680 0.17 +1.2 398,591 + MPMX19_05680 0.24 -0.8 398,705 + MPMX19_05680 0.39 -1.0 398,814 + MPMX19_05680 0.54 -1.2 398,814 + MPMX19_05680 0.54 -1.0 398,814 + MPMX19_05680 0.54 -1.0 398,876 + MPMX19_05680 0.62 -1.4 398,877 - MPMX19_05680 0.62 -0.5 398,948 + MPMX19_05680 0.72 -1.7 399,041 + MPMX19_05680 0.85 -1.7 399,041 + MPMX19_05680 0.85 -0.8 399,041 + MPMX19_05680 0.85 +0.8 399,041 + MPMX19_05680 0.85 -3.0 399,041 + MPMX19_05680 0.85 -1.2 399,041 + MPMX19_05680 0.85 -1.4 399,041 + MPMX19_05680 0.85 +0.8 399,041 + MPMX19_05680 0.85 -1.5 399,041 + MPMX19_05680 0.85 -0.5 399,041 + MPMX19_05680 0.85 -1.5 399,041 + MPMX19_05680 0.85 -0.2 399,041 + MPMX19_05680 0.85 -2.5 399,068 + MPMX19_05680 0.88 +0.8 399,068 + MPMX19_05680 0.88 -2.1
Or see this region's nucleotide sequence