Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05544 and MPMX19_05545 are separated by 545 nucleotides MPMX19_05545 and MPMX19_05546 are separated by 72 nucleotides MPMX19_05546 and MPMX19_05547 are separated by 44 nucleotides
MPMX19_05544: MPMX19_05544 - ATP phosphoribosyltransferase, at 250,536 to 251,246
_05544
MPMX19_05545: MPMX19_05545 - hypothetical protein, at 251,792 to 251,992
_05545
MPMX19_05546: MPMX19_05546 - D-methionine-binding lipoprotein MetQ, at 252,065 to 252,844
_05546
MPMX19_05547: MPMX19_05547 - Methionine import ATP-binding protein MetN, at 252,889 to 253,941
_05547
Position (kb) 252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 251.310 kb on - strand at 251.310 kb on - strand at 251.310 kb on - strand at 251.310 kb on - strand at 251.310 kb on - strand at 251.310 kb on - strand at 251.314 kb on - strand at 251.314 kb on - strand at 251.314 kb on - strand at 251.314 kb on - strand at 251.314 kb on - strand at 251.314 kb on - strand at 251.314 kb on - strand at 251.314 kb on - strand at 251.314 kb on - strand at 251.314 kb on - strand at 251.314 kb on - strand at 251.314 kb on - strand at 251.314 kb on - strand at 251.517 kb on + strand at 251.517 kb on + strand at 251.810 kb on + strand at 251.810 kb on + strand at 251.810 kb on + strand at 251.810 kb on + strand at 251.811 kb on - strand at 251.811 kb on - strand at 251.811 kb on - strand at 251.811 kb on - strand at 251.960 kb on + strand, within MPMX19_05545 at 251.960 kb on + strand, within MPMX19_05545 at 251.960 kb on + strand, within MPMX19_05545 at 251.960 kb on + strand, within MPMX19_05545 at 251.960 kb on + strand, within MPMX19_05545 at 251.960 kb on + strand, within MPMX19_05545 at 251.960 kb on + strand, within MPMX19_05545 at 251.960 kb on + strand, within MPMX19_05545 at 251.961 kb on - strand, within MPMX19_05545 at 251.961 kb on - strand, within MPMX19_05545 at 251.961 kb on - strand, within MPMX19_05545 at 251.961 kb on - strand, within MPMX19_05545 at 251.961 kb on - strand, within MPMX19_05545 at 251.961 kb on - strand, within MPMX19_05545 at 251.961 kb on - strand, within MPMX19_05545 at 251.961 kb on - strand, within MPMX19_05545 at 251.961 kb on - strand, within MPMX19_05545 at 251.961 kb on - strand, within MPMX19_05545 at 251.961 kb on - strand, within MPMX19_05545 at 252.073 kb on + strand at 252.073 kb on + strand at 252.074 kb on - strand at 252.074 kb on - strand at 252.074 kb on - strand at 252.168 kb on - strand, within MPMX19_05546 at 252.341 kb on + strand, within MPMX19_05546 at 252.342 kb on - strand, within MPMX19_05546 at 252.342 kb on - strand, within MPMX19_05546 at 252.389 kb on + strand, within MPMX19_05546 at 252.389 kb on + strand, within MPMX19_05546 at 252.389 kb on + strand, within MPMX19_05546 at 252.389 kb on + strand, within MPMX19_05546 at 252.389 kb on + strand, within MPMX19_05546 at 252.389 kb on + strand, within MPMX19_05546 at 252.390 kb on - strand, within MPMX19_05546 at 252.390 kb on - strand, within MPMX19_05546 at 252.390 kb on - strand, within MPMX19_05546 at 252.390 kb on - strand, within MPMX19_05546 at 252.390 kb on - strand, within MPMX19_05546 at 252.390 kb on - strand, within MPMX19_05546 at 252.644 kb on + strand, within MPMX19_05546 at 252.644 kb on + strand, within MPMX19_05546 at 252.644 kb on + strand, within MPMX19_05546 at 252.644 kb on + strand, within MPMX19_05546 at 252.644 kb on + strand, within MPMX19_05546 at 252.644 kb on + strand, within MPMX19_05546 at 252.644 kb on + strand, within MPMX19_05546 at 252.644 kb on + strand, within MPMX19_05546 at 252.645 kb on - strand, within MPMX19_05546 at 252.645 kb on - strand, within MPMX19_05546 at 252.645 kb on - strand, within MPMX19_05546 at 252.645 kb on - strand, within MPMX19_05546 at 252.645 kb on - strand, within MPMX19_05546 at 252.645 kb on - strand, within MPMX19_05546 at 252.645 kb on - strand, within MPMX19_05546 at 252.645 kb on - strand, within MPMX19_05546 at 252.645 kb on - strand, within MPMX19_05546 at 252.645 kb on - strand, within MPMX19_05546 at 252.645 kb on - strand, within MPMX19_05546 at 252.672 kb on - strand, within MPMX19_05546 at 252.741 kb on + strand, within MPMX19_05546 at 252.741 kb on + strand, within MPMX19_05546 at 252.741 kb on + strand, within MPMX19_05546 at 252.741 kb on + strand, within MPMX19_05546 at 252.741 kb on + strand, within MPMX19_05546 at 252.741 kb on + strand, within MPMX19_05546 at 252.741 kb on + strand, within MPMX19_05546 at 252.742 kb on - strand, within MPMX19_05546 at 252.742 kb on - strand, within MPMX19_05546 at 252.742 kb on - strand, within MPMX19_05546 at 252.742 kb on - strand, within MPMX19_05546 at 252.742 kb on - strand, within MPMX19_05546 at 252.742 kb on - strand, within MPMX19_05546 at 252.742 kb on - strand, within MPMX19_05546 at 252.742 kb on - strand, within MPMX19_05546 at 252.776 kb on + strand at 252.776 kb on + strand at 252.776 kb on + strand at 252.776 kb on + strand at 252.776 kb on + strand at 252.776 kb on + strand at 252.776 kb on + strand at 252.776 kb on + strand at 252.777 kb on - strand at 252.777 kb on - strand at 252.777 kb on - strand at 252.777 kb on - strand at 252.777 kb on - strand at 252.777 kb on - strand at 252.777 kb on - strand at 252.777 kb on - strand at 252.777 kb on - strand at 252.777 kb on - strand at 252.803 kb on - strand at 252.803 kb on - strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.919 kb on + strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 252.920 kb on - strand at 253.002 kb on + strand, within MPMX19_05547 at 253.003 kb on - strand, within MPMX19_05547
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 251,310 - -1.5 251,310 - +0.6 251,310 - +0.2 251,310 - -0.2 251,310 - -0.2 251,310 - -1.0 251,314 - +0.4 251,314 - +1.8 251,314 - +0.3 251,314 - -1.3 251,314 - -2.1 251,314 - -1.8 251,314 - -0.5 251,314 - +0.8 251,314 - +0.5 251,314 - +0.2 251,314 - +0.3 251,314 - +0.2 251,314 - -0.1 251,517 + +1.0 251,517 + -0.1 251,810 + +0.2 251,810 + +0.6 251,810 + +1.2 251,810 + +1.0 251,811 - -1.6 251,811 - +0.8 251,811 - +1.0 251,811 - +0.3 251,960 + MPMX19_05545 0.84 -1.7 251,960 + MPMX19_05545 0.84 -0.2 251,960 + MPMX19_05545 0.84 +0.1 251,960 + MPMX19_05545 0.84 +0.0 251,960 + MPMX19_05545 0.84 -1.5 251,960 + MPMX19_05545 0.84 -0.6 251,960 + MPMX19_05545 0.84 -0.2 251,960 + MPMX19_05545 0.84 +0.6 251,961 - MPMX19_05545 0.84 -1.6 251,961 - MPMX19_05545 0.84 -0.5 251,961 - MPMX19_05545 0.84 +0.1 251,961 - MPMX19_05545 0.84 -0.2 251,961 - MPMX19_05545 0.84 -2.6 251,961 - MPMX19_05545 0.84 +0.3 251,961 - MPMX19_05545 0.84 -0.8 251,961 - MPMX19_05545 0.84 -2.0 251,961 - MPMX19_05545 0.84 +1.0 251,961 - MPMX19_05545 0.84 -1.8 251,961 - MPMX19_05545 0.84 -0.2 252,073 + -0.2 252,073 + +0.6 252,074 - +0.6 252,074 - -0.4 252,074 - -0.1 252,168 - MPMX19_05546 0.13 +0.6 252,341 + MPMX19_05546 0.35 +1.8 252,342 - MPMX19_05546 0.36 +0.1 252,342 - MPMX19_05546 0.36 +0.5 252,389 + MPMX19_05546 0.42 -1.0 252,389 + MPMX19_05546 0.42 -0.5 252,389 + MPMX19_05546 0.42 -0.8 252,389 + MPMX19_05546 0.42 +0.4 252,389 + MPMX19_05546 0.42 +0.6 252,389 + MPMX19_05546 0.42 +0.3 252,390 - MPMX19_05546 0.42 -0.2 252,390 - MPMX19_05546 0.42 +0.2 252,390 - MPMX19_05546 0.42 -1.9 252,390 - MPMX19_05546 0.42 +0.2 252,390 - MPMX19_05546 0.42 -0.2 252,390 - MPMX19_05546 0.42 -0.5 252,644 + MPMX19_05546 0.74 -0.4 252,644 + MPMX19_05546 0.74 +0.5 252,644 + MPMX19_05546 0.74 -0.6 252,644 + MPMX19_05546 0.74 +0.1 252,644 + MPMX19_05546 0.74 +0.0 252,644 + MPMX19_05546 0.74 -0.2 252,644 + MPMX19_05546 0.74 -0.3 252,644 + MPMX19_05546 0.74 +2.1 252,645 - MPMX19_05546 0.74 +0.2 252,645 - MPMX19_05546 0.74 -0.8 252,645 - MPMX19_05546 0.74 +0.6 252,645 - MPMX19_05546 0.74 -1.8 252,645 - MPMX19_05546 0.74 +0.5 252,645 - MPMX19_05546 0.74 -1.3 252,645 - MPMX19_05546 0.74 +0.1 252,645 - MPMX19_05546 0.74 +0.8 252,645 - MPMX19_05546 0.74 +1.9 252,645 - MPMX19_05546 0.74 -0.7 252,645 - MPMX19_05546 0.74 -0.4 252,672 - MPMX19_05546 0.78 -0.6 252,741 + MPMX19_05546 0.87 -0.8 252,741 + MPMX19_05546 0.87 +0.1 252,741 + MPMX19_05546 0.87 +0.0 252,741 + MPMX19_05546 0.87 -1.2 252,741 + MPMX19_05546 0.87 +0.6 252,741 + MPMX19_05546 0.87 +0.1 252,741 + MPMX19_05546 0.87 +0.3 252,742 - MPMX19_05546 0.87 -0.5 252,742 - MPMX19_05546 0.87 -0.2 252,742 - MPMX19_05546 0.87 -0.8 252,742 - MPMX19_05546 0.87 +0.1 252,742 - MPMX19_05546 0.87 +0.3 252,742 - MPMX19_05546 0.87 -0.2 252,742 - MPMX19_05546 0.87 -0.1 252,742 - MPMX19_05546 0.87 -1.8 252,776 + +0.6 252,776 + -1.2 252,776 + -0.5 252,776 + +0.0 252,776 + +0.5 252,776 + -0.5 252,776 + +0.5 252,776 + +0.8 252,777 - -0.8 252,777 - -1.0 252,777 - +0.8 252,777 - -2.2 252,777 - -0.8 252,777 - -0.6 252,777 - +0.2 252,777 - -0.3 252,777 - -0.2 252,777 - -0.4 252,803 - -0.8 252,803 - -0.9 252,919 + -0.1 252,919 + +0.6 252,919 + -0.5 252,919 + -0.8 252,919 + -2.2 252,919 + -0.1 252,919 + -1.8 252,919 + +0.0 252,919 + -0.6 252,919 + -0.2 252,920 - -2.9 252,920 - -2.0 252,920 - +0.2 252,920 - +0.7 252,920 - +0.1 252,920 - +0.3 252,920 - +1.0 252,920 - -0.3 252,920 - +0.0 252,920 - -0.2 253,002 + MPMX19_05547 0.11 -1.5 253,003 - MPMX19_05547 0.11 -2.1
Or see this region's nucleotide sequence