Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05531 and MPMX19_05532 are separated by 132 nucleotides MPMX19_05532 and MPMX19_05533 are separated by 93 nucleotides MPMX19_05533 and MPMX19_05534 are separated by 118 nucleotides MPMX19_05534 and MPMX19_05535 are separated by 30 nucleotides
MPMX19_05531: MPMX19_05531 - Serine acetyltransferase, at 238,519 to 239,355
_05531
MPMX19_05532: MPMX19_05532 - hypothetical protein, at 239,488 to 240,237
_05532
MPMX19_05533: MPMX19_05533 - tRNA-Phe, at 240,331 to 240,406
_05533
MPMX19_05534: MPMX19_05534 - DNA gyrase inhibitor YacG, at 240,525 to 240,764
_05534
MPMX19_05535: MPMX19_05535 - Ribonuclease G, at 240,795 to 242,030
_05535
Position (kb) 240
241 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 239.344 kb on + strand at 239.344 kb on + strand at 239.344 kb on + strand at 239.345 kb on - strand at 239.345 kb on - strand at 239.415 kb on + strand at 239.416 kb on - strand at 239.416 kb on - strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.428 kb on + strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.429 kb on - strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.431 kb on - strand at 239.431 kb on - strand at 239.431 kb on - strand at 239.431 kb on - strand at 239.431 kb on - strand at 239.431 kb on - strand at 239.503 kb on - strand at 239.653 kb on + strand, within MPMX19_05532 at 239.653 kb on + strand, within MPMX19_05532 at 239.653 kb on + strand, within MPMX19_05532 at 239.653 kb on + strand, within MPMX19_05532 at 239.654 kb on - strand, within MPMX19_05532 at 239.654 kb on - strand, within MPMX19_05532 at 239.654 kb on - strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.734 kb on + strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.735 kb on - strand, within MPMX19_05532 at 239.743 kb on + strand, within MPMX19_05532 at 239.743 kb on + strand, within MPMX19_05532 at 239.743 kb on + strand, within MPMX19_05532 at 239.743 kb on + strand, within MPMX19_05532 at 239.743 kb on + strand, within MPMX19_05532 at 239.743 kb on + strand, within MPMX19_05532 at 239.743 kb on + strand, within MPMX19_05532 at 239.743 kb on + strand, within MPMX19_05532 at 239.743 kb on + strand, within MPMX19_05532 at 239.743 kb on + strand, within MPMX19_05532 at 239.743 kb on + strand, within MPMX19_05532 at 239.743 kb on + strand, within MPMX19_05532 at 239.744 kb on - strand, within MPMX19_05532 at 239.744 kb on - strand, within MPMX19_05532 at 239.744 kb on - strand, within MPMX19_05532 at 239.744 kb on - strand, within MPMX19_05532 at 239.744 kb on - strand, within MPMX19_05532 at 239.744 kb on - strand, within MPMX19_05532 at 239.744 kb on - strand, within MPMX19_05532 at 239.744 kb on - strand, within MPMX19_05532 at 239.744 kb on - strand, within MPMX19_05532 at 239.744 kb on - strand, within MPMX19_05532 at 239.914 kb on + strand, within MPMX19_05532 at 239.914 kb on + strand, within MPMX19_05532 at 239.914 kb on + strand, within MPMX19_05532 at 239.926 kb on + strand, within MPMX19_05532 at 239.926 kb on + strand, within MPMX19_05532 at 240.031 kb on + strand, within MPMX19_05532 at 240.031 kb on + strand, within MPMX19_05532 at 240.031 kb on + strand, within MPMX19_05532 at 240.031 kb on + strand, within MPMX19_05532 at 240.031 kb on + strand, within MPMX19_05532 at 240.031 kb on + strand, within MPMX19_05532 at 240.031 kb on + strand, within MPMX19_05532 at 240.031 kb on + strand, within MPMX19_05532 at 240.031 kb on + strand, within MPMX19_05532 at 240.031 kb on + strand, within MPMX19_05532 at 240.031 kb on + strand, within MPMX19_05532 at 240.031 kb on + strand, within MPMX19_05532 at 240.032 kb on - strand, within MPMX19_05532 at 240.138 kb on + strand, within MPMX19_05532 at 240.138 kb on + strand, within MPMX19_05532 at 240.139 kb on - strand, within MPMX19_05532 at 240.241 kb on + strand at 240.589 kb on + strand, within MPMX19_05534 at 240.589 kb on + strand, within MPMX19_05534 at 240.590 kb on - strand, within MPMX19_05534 at 240.590 kb on - strand, within MPMX19_05534 at 240.778 kb on + strand at 240.788 kb on + strand at 240.788 kb on + strand at 240.788 kb on + strand at 240.788 kb on + strand at 240.788 kb on + strand at 240.788 kb on + strand at 240.788 kb on + strand at 240.788 kb on + strand at 240.788 kb on + strand at 240.789 kb on - strand at 240.789 kb on - strand at 240.789 kb on - strand at 240.789 kb on - strand at 240.789 kb on - strand at 240.789 kb on - strand at 240.789 kb on - strand at 240.789 kb on - strand at 240.789 kb on - strand at 240.789 kb on - strand at 240.789 kb on - strand at 240.789 kb on - strand at 240.789 kb on - strand at 240.874 kb on + strand at 240.874 kb on + strand at 240.874 kb on + strand at 240.874 kb on + strand at 240.874 kb on + strand at 240.874 kb on + strand at 240.874 kb on + strand at 240.874 kb on + strand at 240.874 kb on + strand at 240.874 kb on + strand at 240.874 kb on + strand at 240.874 kb on + strand at 240.875 kb on - strand at 240.875 kb on - strand at 240.875 kb on - strand at 240.875 kb on - strand at 240.875 kb on - strand at 240.875 kb on - strand at 240.875 kb on - strand at 240.875 kb on - strand at 240.875 kb on - strand at 240.875 kb on - strand at 240.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 239,344 + +0.8 239,344 + +0.4 239,344 + +1.1 239,345 - +0.0 239,345 - -1.8 239,415 + -0.1 239,416 - +1.7 239,416 - -0.1 239,428 + +0.2 239,428 + +0.1 239,428 + -0.3 239,428 + +0.0 239,428 + -0.2 239,428 + -0.1 239,428 + -1.5 239,428 + -1.1 239,428 + +0.5 239,428 + +0.1 239,428 + -0.8 239,428 + -2.5 239,428 + -0.5 239,428 + -1.6 239,428 + +0.8 239,428 + -1.1 239,428 + -0.0 239,428 + -0.5 239,428 + +0.5 239,428 + +0.4 239,428 + +0.3 239,428 + -0.8 239,428 + +0.6 239,428 + +1.1 239,428 + +0.4 239,428 + -1.6 239,428 + +0.6 239,428 + +0.6 239,428 + -0.7 239,428 + +0.3 239,429 - -2.8 239,429 - -1.4 239,429 - -0.4 239,429 - -0.1 239,429 - -1.4 239,429 - +0.4 239,429 - +0.1 239,429 - -0.5 239,429 - -1.7 239,429 - -0.7 239,429 - -0.2 239,429 - -1.2 239,429 - -1.0 239,429 - -0.6 239,429 - -0.1 239,429 - +0.3 239,429 - +0.6 239,429 - -1.2 239,429 - +0.6 239,429 - -1.1 239,429 - +0.3 239,429 - -0.8 239,429 - +0.5 239,429 - -1.9 239,429 - +0.1 239,429 - -0.2 239,429 - +0.1 239,429 - -2.0 239,429 - -1.0 239,430 + -0.3 239,430 + +0.1 239,430 + -1.2 239,430 + -0.8 239,430 + +1.4 239,430 + -0.8 239,430 + +0.4 239,430 + -1.5 239,430 + +0.2 239,430 + +0.1 239,430 + +0.4 239,431 - +0.6 239,431 - -0.2 239,431 - +0.6 239,431 - -0.7 239,431 - +0.1 239,431 - +0.9 239,503 - +0.8 239,653 + MPMX19_05532 0.22 -0.1 239,653 + MPMX19_05532 0.22 -1.6 239,653 + MPMX19_05532 0.22 -1.1 239,653 + MPMX19_05532 0.22 -1.8 239,654 - MPMX19_05532 0.22 +0.9 239,654 - MPMX19_05532 0.22 +0.2 239,654 - MPMX19_05532 0.22 +1.0 239,734 + MPMX19_05532 0.33 +1.6 239,734 + MPMX19_05532 0.33 -0.4 239,734 + MPMX19_05532 0.33 -0.7 239,734 + MPMX19_05532 0.33 -1.2 239,734 + MPMX19_05532 0.33 -1.6 239,734 + MPMX19_05532 0.33 -0.5 239,734 + MPMX19_05532 0.33 +0.2 239,734 + MPMX19_05532 0.33 -0.4 239,734 + MPMX19_05532 0.33 +0.7 239,734 + MPMX19_05532 0.33 +1.0 239,734 + MPMX19_05532 0.33 +0.4 239,734 + MPMX19_05532 0.33 -1.2 239,734 + MPMX19_05532 0.33 +0.8 239,734 + MPMX19_05532 0.33 +0.4 239,734 + MPMX19_05532 0.33 -1.1 239,734 + MPMX19_05532 0.33 -1.0 239,734 + MPMX19_05532 0.33 -0.2 239,734 + MPMX19_05532 0.33 -0.3 239,734 + MPMX19_05532 0.33 -0.4 239,734 + MPMX19_05532 0.33 +0.2 239,734 + MPMX19_05532 0.33 +1.0 239,734 + MPMX19_05532 0.33 -0.6 239,734 + MPMX19_05532 0.33 -0.7 239,734 + MPMX19_05532 0.33 -0.4 239,734 + MPMX19_05532 0.33 -0.5 239,734 + MPMX19_05532 0.33 +0.0 239,734 + MPMX19_05532 0.33 -0.6 239,735 - MPMX19_05532 0.33 -0.5 239,735 - MPMX19_05532 0.33 -0.9 239,735 - MPMX19_05532 0.33 -0.1 239,735 - MPMX19_05532 0.33 -0.6 239,735 - MPMX19_05532 0.33 +0.2 239,735 - MPMX19_05532 0.33 +0.9 239,735 - MPMX19_05532 0.33 -0.9 239,735 - MPMX19_05532 0.33 +1.1 239,735 - MPMX19_05532 0.33 -0.1 239,735 - MPMX19_05532 0.33 -0.1 239,735 - MPMX19_05532 0.33 -0.7 239,735 - MPMX19_05532 0.33 +0.5 239,735 - MPMX19_05532 0.33 +0.8 239,735 - MPMX19_05532 0.33 -0.5 239,735 - MPMX19_05532 0.33 -1.2 239,735 - MPMX19_05532 0.33 -0.4 239,735 - MPMX19_05532 0.33 -0.2 239,735 - MPMX19_05532 0.33 -0.8 239,735 - MPMX19_05532 0.33 +0.0 239,735 - MPMX19_05532 0.33 -1.2 239,743 + MPMX19_05532 0.34 -1.0 239,743 + MPMX19_05532 0.34 +0.8 239,743 + MPMX19_05532 0.34 -1.4 239,743 + MPMX19_05532 0.34 +0.1 239,743 + MPMX19_05532 0.34 -0.7 239,743 + MPMX19_05532 0.34 +0.0 239,743 + MPMX19_05532 0.34 -0.2 239,743 + MPMX19_05532 0.34 -0.1 239,743 + MPMX19_05532 0.34 +0.7 239,743 + MPMX19_05532 0.34 -0.1 239,743 + MPMX19_05532 0.34 -0.1 239,743 + MPMX19_05532 0.34 -0.6 239,744 - MPMX19_05532 0.34 -0.3 239,744 - MPMX19_05532 0.34 +1.1 239,744 - MPMX19_05532 0.34 +0.5 239,744 - MPMX19_05532 0.34 +0.1 239,744 - MPMX19_05532 0.34 -0.8 239,744 - MPMX19_05532 0.34 +0.1 239,744 - MPMX19_05532 0.34 +0.6 239,744 - MPMX19_05532 0.34 +0.4 239,744 - MPMX19_05532 0.34 -1.1 239,744 - MPMX19_05532 0.34 +0.3 239,914 + MPMX19_05532 0.57 +0.8 239,914 + MPMX19_05532 0.57 -1.5 239,914 + MPMX19_05532 0.57 -0.5 239,926 + MPMX19_05532 0.58 -0.5 239,926 + MPMX19_05532 0.58 +0.5 240,031 + MPMX19_05532 0.72 -1.4 240,031 + MPMX19_05532 0.72 -0.2 240,031 + MPMX19_05532 0.72 +0.1 240,031 + MPMX19_05532 0.72 -1.2 240,031 + MPMX19_05532 0.72 +0.4 240,031 + MPMX19_05532 0.72 +0.2 240,031 + MPMX19_05532 0.72 +0.0 240,031 + MPMX19_05532 0.72 -1.4 240,031 + MPMX19_05532 0.72 +0.5 240,031 + MPMX19_05532 0.72 +0.4 240,031 + MPMX19_05532 0.72 -0.7 240,031 + MPMX19_05532 0.72 +1.0 240,032 - MPMX19_05532 0.73 -1.4 240,138 + MPMX19_05532 0.87 -0.6 240,138 + MPMX19_05532 0.87 -0.6 240,139 - MPMX19_05532 0.87 +0.5 240,241 + -1.2 240,589 + MPMX19_05534 0.27 -0.4 240,589 + MPMX19_05534 0.27 -0.4 240,590 - MPMX19_05534 0.27 -0.5 240,590 - MPMX19_05534 0.27 -0.1 240,778 + +0.8 240,788 + -1.4 240,788 + -0.2 240,788 + +0.4 240,788 + +1.3 240,788 + +0.5 240,788 + +0.2 240,788 + -1.0 240,788 + +0.1 240,788 + +0.0 240,789 - -1.2 240,789 - -1.2 240,789 - -0.6 240,789 - +0.0 240,789 - +0.2 240,789 - -1.4 240,789 - -1.4 240,789 - +0.1 240,789 - -0.4 240,789 - -2.0 240,789 - -0.6 240,789 - -0.5 240,789 - -0.0 240,874 + +0.3 240,874 + +0.1 240,874 + +0.8 240,874 + -0.8 240,874 + +0.8 240,874 + -0.3 240,874 + +0.2 240,874 + -0.2 240,874 + -0.5 240,874 + -0.8 240,874 + +0.0 240,874 + +0.2 240,875 - -2.6 240,875 - -1.9 240,875 - +1.2 240,875 - +0.3 240,875 - -0.5 240,875 - +1.3 240,875 - -0.1 240,875 - -1.2 240,875 - -0.9 240,875 - -1.2 240,875 - -0.4
Or see this region's nucleotide sequence