Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05505 and MPMX19_05506 are separated by 60 nucleotides MPMX19_05506 and MPMX19_05507 are separated by 3 nucleotides MPMX19_05507 and MPMX19_05508 are separated by 53 nucleotides
MPMX19_05505: MPMX19_05505 - Leucine-responsive regulatory protein, at 209,799 to 210,380
_05505
MPMX19_05506: MPMX19_05506 - Leucine efflux protein, at 210,441 to 211,085
_05506
MPMX19_05507: MPMX19_05507 - Transcriptional regulatory protein DegU, at 211,089 to 211,820
_05507
MPMX19_05508: MPMX19_05508 - Sensor histidine kinase RcsC, at 211,874 to 215,416
_05508
Position (kb) 211
212 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 210.145 kb on + strand, within MPMX19_05505 at 210.145 kb on + strand, within MPMX19_05505 at 210.146 kb on - strand, within MPMX19_05505 at 210.146 kb on - strand, within MPMX19_05505 at 210.315 kb on + strand, within MPMX19_05505 at 210.316 kb on - strand, within MPMX19_05505 at 210.363 kb on + strand at 210.363 kb on + strand at 210.363 kb on + strand at 210.404 kb on + strand at 210.405 kb on - strand at 210.405 kb on - strand at 210.405 kb on - strand at 210.405 kb on - strand at 210.440 kb on + strand at 210.440 kb on + strand at 210.440 kb on + strand at 210.440 kb on + strand at 210.440 kb on + strand at 210.440 kb on + strand at 210.440 kb on + strand at 210.440 kb on + strand at 210.440 kb on + strand at 210.441 kb on - strand at 210.441 kb on - strand at 210.441 kb on - strand at 210.441 kb on - strand at 210.483 kb on + strand at 210.483 kb on + strand at 210.483 kb on + strand at 210.483 kb on + strand at 210.484 kb on - strand at 210.678 kb on + strand, within MPMX19_05506 at 210.678 kb on + strand, within MPMX19_05506 at 210.678 kb on + strand, within MPMX19_05506 at 210.678 kb on + strand, within MPMX19_05506 at 210.678 kb on + strand, within MPMX19_05506 at 210.679 kb on - strand, within MPMX19_05506 at 210.679 kb on - strand, within MPMX19_05506 at 210.679 kb on - strand, within MPMX19_05506 at 210.679 kb on - strand, within MPMX19_05506 at 210.679 kb on - strand, within MPMX19_05506 at 210.679 kb on - strand, within MPMX19_05506 at 210.685 kb on + strand, within MPMX19_05506 at 210.685 kb on + strand, within MPMX19_05506 at 210.685 kb on + strand, within MPMX19_05506 at 210.686 kb on - strand, within MPMX19_05506 at 210.780 kb on + strand, within MPMX19_05506 at 210.780 kb on + strand, within MPMX19_05506 at 210.780 kb on + strand, within MPMX19_05506 at 210.780 kb on + strand, within MPMX19_05506 at 210.781 kb on - strand, within MPMX19_05506 at 210.781 kb on - strand, within MPMX19_05506 at 210.954 kb on + strand, within MPMX19_05506 at 210.954 kb on + strand, within MPMX19_05506 at 210.954 kb on + strand, within MPMX19_05506 at 210.954 kb on + strand, within MPMX19_05506 at 210.954 kb on + strand, within MPMX19_05506 at 210.954 kb on + strand, within MPMX19_05506 at 210.954 kb on + strand, within MPMX19_05506 at 210.954 kb on + strand, within MPMX19_05506 at 210.954 kb on + strand, within MPMX19_05506 at 210.954 kb on + strand, within MPMX19_05506 at 210.954 kb on + strand, within MPMX19_05506 at 210.954 kb on + strand, within MPMX19_05506 at 210.954 kb on + strand, within MPMX19_05506 at 210.955 kb on - strand, within MPMX19_05506 at 210.955 kb on - strand, within MPMX19_05506 at 210.955 kb on - strand, within MPMX19_05506 at 210.955 kb on - strand, within MPMX19_05506 at 210.955 kb on - strand, within MPMX19_05506 at 210.955 kb on - strand, within MPMX19_05506 at 210.955 kb on - strand, within MPMX19_05506 at 210.955 kb on - strand, within MPMX19_05506 at 210.955 kb on - strand, within MPMX19_05506 at 210.955 kb on - strand, within MPMX19_05506 at 210.955 kb on - strand, within MPMX19_05506 at 210.955 kb on - strand, within MPMX19_05506 at 210.955 kb on - strand, within MPMX19_05506 at 211.083 kb on + strand at 211.083 kb on + strand at 211.083 kb on + strand at 211.083 kb on + strand at 211.084 kb on - strand at 211.084 kb on - strand at 211.084 kb on - strand at 211.084 kb on - strand at 211.084 kb on - strand at 211.084 kb on - strand at 211.084 kb on - strand at 211.090 kb on + strand at 211.090 kb on + strand at 211.090 kb on + strand at 211.091 kb on - strand at 211.091 kb on - strand at 211.091 kb on - strand at 211.091 kb on - strand at 211.426 kb on + strand, within MPMX19_05507 at 211.426 kb on + strand, within MPMX19_05507 at 211.426 kb on + strand, within MPMX19_05507 at 211.426 kb on + strand, within MPMX19_05507 at 211.426 kb on + strand, within MPMX19_05507 at 211.426 kb on + strand, within MPMX19_05507 at 211.426 kb on + strand, within MPMX19_05507 at 211.426 kb on + strand, within MPMX19_05507 at 211.426 kb on + strand, within MPMX19_05507 at 211.426 kb on + strand, within MPMX19_05507 at 211.427 kb on - strand, within MPMX19_05507 at 211.427 kb on - strand, within MPMX19_05507 at 211.427 kb on - strand, within MPMX19_05507 at 211.427 kb on - strand, within MPMX19_05507 at 211.427 kb on - strand, within MPMX19_05507 at 211.427 kb on - strand, within MPMX19_05507 at 211.427 kb on - strand, within MPMX19_05507 at 211.427 kb on - strand, within MPMX19_05507 at 211.441 kb on + strand, within MPMX19_05507 at 211.441 kb on + strand, within MPMX19_05507 at 211.441 kb on + strand, within MPMX19_05507 at 211.441 kb on + strand, within MPMX19_05507 at 211.442 kb on - strand, within MPMX19_05507 at 211.442 kb on - strand, within MPMX19_05507 at 211.442 kb on - strand, within MPMX19_05507 at 211.442 kb on - strand, within MPMX19_05507 at 211.683 kb on + strand, within MPMX19_05507 at 211.875 kb on + strand at 211.953 kb on + strand at 211.953 kb on + strand at 211.953 kb on + strand at 211.954 kb on - strand at 211.954 kb on - strand at 211.954 kb on - strand at 211.954 kb on - strand at 211.954 kb on - strand at 211.954 kb on - strand at 211.954 kb on - strand at 212.100 kb on + strand at 212.100 kb on + strand at 212.622 kb on + strand, within MPMX19_05508 at 212.623 kb on - strand, within MPMX19_05508 at 212.705 kb on + strand, within MPMX19_05508 at 212.705 kb on + strand, within MPMX19_05508 at 212.705 kb on + strand, within MPMX19_05508 at 212.705 kb on + strand, within MPMX19_05508 at 212.705 kb on + strand, within MPMX19_05508 at 212.706 kb on - strand, within MPMX19_05508 at 212.706 kb on - strand, within MPMX19_05508 at 212.706 kb on - strand, within MPMX19_05508 at 212.706 kb on - strand, within MPMX19_05508 at 212.706 kb on - strand, within MPMX19_05508
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 210,145 + MPMX19_05505 0.59 -0.5 210,145 + MPMX19_05505 0.59 -0.6 210,146 - MPMX19_05505 0.60 -0.4 210,146 - MPMX19_05505 0.60 -0.2 210,315 + MPMX19_05505 0.89 +0.5 210,316 - MPMX19_05505 0.89 +0.4 210,363 + -1.2 210,363 + +0.2 210,363 + +0.3 210,404 + -0.6 210,405 - -0.1 210,405 - -0.3 210,405 - +0.2 210,405 - +0.3 210,440 + +0.1 210,440 + -1.8 210,440 + -1.5 210,440 + -0.2 210,440 + +0.0 210,440 + -1.2 210,440 + -0.1 210,440 + -1.1 210,440 + -1.0 210,441 - -2.4 210,441 - -0.2 210,441 - -0.2 210,441 - -0.8 210,483 + -0.6 210,483 + -0.5 210,483 + -0.6 210,483 + +0.8 210,484 - -0.1 210,678 + MPMX19_05506 0.37 -1.2 210,678 + MPMX19_05506 0.37 +0.8 210,678 + MPMX19_05506 0.37 -1.2 210,678 + MPMX19_05506 0.37 -0.2 210,678 + MPMX19_05506 0.37 -0.7 210,679 - MPMX19_05506 0.37 -0.5 210,679 - MPMX19_05506 0.37 -0.2 210,679 - MPMX19_05506 0.37 -0.8 210,679 - MPMX19_05506 0.37 -0.3 210,679 - MPMX19_05506 0.37 +0.9 210,679 - MPMX19_05506 0.37 -0.8 210,685 + MPMX19_05506 0.38 +1.1 210,685 + MPMX19_05506 0.38 +1.2 210,685 + MPMX19_05506 0.38 +0.2 210,686 - MPMX19_05506 0.38 +0.8 210,780 + MPMX19_05506 0.53 +0.1 210,780 + MPMX19_05506 0.53 -0.8 210,780 + MPMX19_05506 0.53 +0.2 210,780 + MPMX19_05506 0.53 +0.6 210,781 - MPMX19_05506 0.53 -0.3 210,781 - MPMX19_05506 0.53 -1.2 210,954 + MPMX19_05506 0.80 -2.5 210,954 + MPMX19_05506 0.80 -0.9 210,954 + MPMX19_05506 0.80 +0.5 210,954 + MPMX19_05506 0.80 +0.2 210,954 + MPMX19_05506 0.80 -0.2 210,954 + MPMX19_05506 0.80 -0.6 210,954 + MPMX19_05506 0.80 -1.5 210,954 + MPMX19_05506 0.80 -1.2 210,954 + MPMX19_05506 0.80 +0.2 210,954 + MPMX19_05506 0.80 -0.8 210,954 + MPMX19_05506 0.80 -1.5 210,954 + MPMX19_05506 0.80 -1.1 210,954 + MPMX19_05506 0.80 +0.4 210,955 - MPMX19_05506 0.80 -1.3 210,955 - MPMX19_05506 0.80 +0.2 210,955 - MPMX19_05506 0.80 -2.6 210,955 - MPMX19_05506 0.80 -0.4 210,955 - MPMX19_05506 0.80 -1.7 210,955 - MPMX19_05506 0.80 +0.1 210,955 - MPMX19_05506 0.80 -0.8 210,955 - MPMX19_05506 0.80 +0.2 210,955 - MPMX19_05506 0.80 -0.5 210,955 - MPMX19_05506 0.80 +0.4 210,955 - MPMX19_05506 0.80 -1.5 210,955 - MPMX19_05506 0.80 +0.0 210,955 - MPMX19_05506 0.80 -0.3 211,083 + -0.1 211,083 + +0.0 211,083 + -0.1 211,083 + -0.8 211,084 - -0.6 211,084 - -0.7 211,084 - -0.6 211,084 - +0.2 211,084 - -0.1 211,084 - +0.1 211,084 - -1.5 211,090 + -0.2 211,090 + -0.5 211,090 + -0.6 211,091 - +0.9 211,091 - -0.1 211,091 - -1.0 211,091 - -1.0 211,426 + MPMX19_05507 0.46 -1.8 211,426 + MPMX19_05507 0.46 -0.5 211,426 + MPMX19_05507 0.46 +1.8 211,426 + MPMX19_05507 0.46 +0.6 211,426 + MPMX19_05507 0.46 -1.3 211,426 + MPMX19_05507 0.46 +0.6 211,426 + MPMX19_05507 0.46 -0.8 211,426 + MPMX19_05507 0.46 -1.3 211,426 + MPMX19_05507 0.46 -1.0 211,426 + MPMX19_05507 0.46 +0.2 211,427 - MPMX19_05507 0.46 -0.2 211,427 - MPMX19_05507 0.46 -2.9 211,427 - MPMX19_05507 0.46 -1.5 211,427 - MPMX19_05507 0.46 -0.5 211,427 - MPMX19_05507 0.46 +1.6 211,427 - MPMX19_05507 0.46 -1.2 211,427 - MPMX19_05507 0.46 -1.1 211,427 - MPMX19_05507 0.46 +1.1 211,441 + MPMX19_05507 0.48 -0.1 211,441 + MPMX19_05507 0.48 -0.5 211,441 + MPMX19_05507 0.48 +0.2 211,441 + MPMX19_05507 0.48 -1.6 211,442 - MPMX19_05507 0.48 -1.2 211,442 - MPMX19_05507 0.48 -1.0 211,442 - MPMX19_05507 0.48 -0.6 211,442 - MPMX19_05507 0.48 -1.1 211,683 + MPMX19_05507 0.81 -1.0 211,875 + -2.5 211,953 + -1.3 211,953 + +0.4 211,953 + -1.0 211,954 - +0.6 211,954 - +0.1 211,954 - -0.2 211,954 - +0.2 211,954 - -1.2 211,954 - +0.1 211,954 - -1.3 212,100 + +0.2 212,100 + +0.4 212,622 + MPMX19_05508 0.21 +0.3 212,623 - MPMX19_05508 0.21 +0.1 212,705 + MPMX19_05508 0.23 +0.2 212,705 + MPMX19_05508 0.23 -0.8 212,705 + MPMX19_05508 0.23 -1.0 212,705 + MPMX19_05508 0.23 -1.6 212,705 + MPMX19_05508 0.23 -0.2 212,706 - MPMX19_05508 0.23 -0.8 212,706 - MPMX19_05508 0.23 -1.1 212,706 - MPMX19_05508 0.23 +0.8 212,706 - MPMX19_05508 0.23 -2.0 212,706 - MPMX19_05508 0.23 -2.1
Or see this region's nucleotide sequence