Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05260 and MPMX19_05261 overlap by 4 nucleotides MPMX19_05261 and MPMX19_05262 are separated by 90 nucleotides MPMX19_05262 and MPMX19_05263 are separated by 6 nucleotides
MPMX19_05260: MPMX19_05260 - Cobalt-zinc-cadmium resistance protein CzcA, at 792,920 to 796,042
_05260
MPMX19_05261: MPMX19_05261 - Multidrug resistance protein MdtE, at 796,039 to 797,157
_05261
MPMX19_05262: MPMX19_05262 - hypothetical protein, at 797,248 to 797,880
_05262
MPMX19_05263: MPMX19_05263 - hypothetical protein, at 797,887 to 799,308
_05263
Position (kb) 796
797
798 Strain fitness (log2 ratio) -2
-1
0
1
2 at 795.204 kb on + strand, within MPMX19_05260 at 795.204 kb on + strand, within MPMX19_05260 at 795.205 kb on - strand, within MPMX19_05260 at 795.205 kb on - strand, within MPMX19_05260 at 795.205 kb on - strand, within MPMX19_05260 at 795.205 kb on - strand, within MPMX19_05260 at 795.205 kb on - strand, within MPMX19_05260 at 795.216 kb on + strand, within MPMX19_05260 at 795.216 kb on + strand, within MPMX19_05260 at 795.216 kb on + strand, within MPMX19_05260 at 795.216 kb on + strand, within MPMX19_05260 at 795.216 kb on + strand, within MPMX19_05260 at 795.217 kb on - strand, within MPMX19_05260 at 795.234 kb on + strand, within MPMX19_05260 at 795.234 kb on + strand, within MPMX19_05260 at 795.234 kb on + strand, within MPMX19_05260 at 795.234 kb on + strand, within MPMX19_05260 at 795.235 kb on - strand, within MPMX19_05260 at 795.235 kb on - strand, within MPMX19_05260 at 795.345 kb on + strand, within MPMX19_05260 at 795.345 kb on + strand, within MPMX19_05260 at 795.345 kb on + strand, within MPMX19_05260 at 795.345 kb on + strand, within MPMX19_05260 at 795.345 kb on + strand, within MPMX19_05260 at 795.345 kb on + strand, within MPMX19_05260 at 795.345 kb on + strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.346 kb on - strand, within MPMX19_05260 at 795.471 kb on + strand, within MPMX19_05260 at 795.471 kb on + strand, within MPMX19_05260 at 795.471 kb on + strand, within MPMX19_05260 at 795.471 kb on + strand, within MPMX19_05260 at 795.471 kb on + strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.472 kb on - strand, within MPMX19_05260 at 795.600 kb on + strand, within MPMX19_05260 at 795.600 kb on + strand, within MPMX19_05260 at 795.600 kb on + strand, within MPMX19_05260 at 795.600 kb on + strand, within MPMX19_05260 at 795.600 kb on + strand, within MPMX19_05260 at 795.600 kb on + strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.601 kb on - strand, within MPMX19_05260 at 795.605 kb on - strand, within MPMX19_05260 at 795.605 kb on - strand, within MPMX19_05260 at 795.612 kb on + strand, within MPMX19_05260 at 795.612 kb on + strand, within MPMX19_05260 at 795.613 kb on - strand, within MPMX19_05260 at 795.613 kb on - strand, within MPMX19_05260 at 795.669 kb on + strand, within MPMX19_05260 at 795.670 kb on - strand, within MPMX19_05260 at 795.670 kb on - strand, within MPMX19_05260 at 795.702 kb on + strand, within MPMX19_05260 at 795.703 kb on - strand, within MPMX19_05260 at 795.703 kb on - strand, within MPMX19_05260 at 795.780 kb on + strand at 795.780 kb on + strand at 795.780 kb on + strand at 795.780 kb on + strand at 795.780 kb on + strand at 795.781 kb on - strand at 795.781 kb on - strand at 795.781 kb on - strand at 795.798 kb on + strand at 795.798 kb on + strand at 795.798 kb on + strand at 795.798 kb on + strand at 795.798 kb on + strand at 795.798 kb on + strand at 795.798 kb on + strand at 795.798 kb on + strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.799 kb on - strand at 795.801 kb on + strand at 795.801 kb on + strand at 795.802 kb on - strand at 795.802 kb on - strand at 795.802 kb on - strand at 795.802 kb on - strand at 795.942 kb on + strand at 795.942 kb on + strand at 795.942 kb on + strand at 795.942 kb on + strand at 796.160 kb on + strand, within MPMX19_05261 at 796.160 kb on + strand, within MPMX19_05261 at 796.161 kb on - strand, within MPMX19_05261 at 796.622 kb on + strand, within MPMX19_05261 at 796.622 kb on + strand, within MPMX19_05261 at 796.622 kb on + strand, within MPMX19_05261 at 796.622 kb on + strand, within MPMX19_05261 at 796.622 kb on + strand, within MPMX19_05261 at 796.623 kb on - strand, within MPMX19_05261 at 796.623 kb on - strand, within MPMX19_05261 at 796.623 kb on - strand, within MPMX19_05261 at 796.623 kb on - strand, within MPMX19_05261 at 796.623 kb on - strand, within MPMX19_05261 at 796.623 kb on - strand, within MPMX19_05261 at 796.623 kb on - strand, within MPMX19_05261 at 796.712 kb on + strand, within MPMX19_05261 at 796.712 kb on + strand, within MPMX19_05261 at 796.713 kb on - strand, within MPMX19_05261 at 796.713 kb on - strand, within MPMX19_05261 at 796.713 kb on - strand, within MPMX19_05261 at 796.713 kb on - strand, within MPMX19_05261 at 796.754 kb on + strand, within MPMX19_05261 at 796.755 kb on - strand, within MPMX19_05261 at 797.158 kb on - strand at 797.158 kb on - strand at 797.158 kb on - strand at 797.158 kb on - strand at 797.159 kb on - strand at 797.185 kb on + strand at 797.186 kb on - strand at 797.186 kb on - strand at 797.186 kb on - strand at 797.190 kb on + strand at 797.190 kb on + strand at 797.191 kb on - strand at 797.191 kb on - strand at 797.191 kb on - strand at 797.197 kb on - strand at 797.204 kb on + strand at 797.205 kb on - strand at 797.205 kb on - strand at 797.239 kb on + strand at 797.240 kb on - strand at 797.240 kb on - strand at 797.240 kb on - strand at 797.351 kb on - strand, within MPMX19_05262 at 797.410 kb on + strand, within MPMX19_05262 at 797.410 kb on + strand, within MPMX19_05262 at 797.410 kb on + strand, within MPMX19_05262 at 797.410 kb on + strand, within MPMX19_05262 at 797.411 kb on - strand, within MPMX19_05262 at 797.411 kb on - strand, within MPMX19_05262 at 797.411 kb on - strand, within MPMX19_05262 at 797.411 kb on - strand, within MPMX19_05262 at 797.411 kb on - strand, within MPMX19_05262 at 797.411 kb on - strand, within MPMX19_05262 at 797.411 kb on - strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.440 kb on + strand, within MPMX19_05262 at 797.441 kb on - strand, within MPMX19_05262 at 797.441 kb on - strand, within MPMX19_05262 at 797.441 kb on - strand, within MPMX19_05262 at 797.441 kb on - strand, within MPMX19_05262 at 797.638 kb on + strand, within MPMX19_05262 at 797.638 kb on + strand, within MPMX19_05262 at 797.639 kb on - strand, within MPMX19_05262 at 797.639 kb on - strand, within MPMX19_05262 at 797.639 kb on - strand, within MPMX19_05262 at 797.776 kb on + strand, within MPMX19_05262 at 797.776 kb on + strand, within MPMX19_05262 at 797.776 kb on + strand, within MPMX19_05262 at 797.777 kb on - strand, within MPMX19_05262 at 797.777 kb on - strand, within MPMX19_05262 at 797.789 kb on + strand, within MPMX19_05262 at 797.789 kb on + strand, within MPMX19_05262 at 797.789 kb on + strand, within MPMX19_05262 at 797.790 kb on - strand, within MPMX19_05262 at 797.888 kb on + strand at 797.889 kb on - strand at 797.903 kb on + strand at 797.903 kb on + strand at 797.903 kb on + strand at 797.904 kb on - strand at 798.062 kb on + strand, within MPMX19_05263 at 798.063 kb on - strand, within MPMX19_05263 at 798.063 kb on - strand, within MPMX19_05263 at 798.063 kb on - strand, within MPMX19_05263 at 798.080 kb on + strand, within MPMX19_05263 at 798.080 kb on + strand, within MPMX19_05263 at 798.081 kb on - strand, within MPMX19_05263 at 798.081 kb on - strand, within MPMX19_05263 at 798.081 kb on - strand, within MPMX19_05263
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 795,204 + MPMX19_05260 0.73 -0.7 795,204 + MPMX19_05260 0.73 +0.4 795,205 - MPMX19_05260 0.73 -1.3 795,205 - MPMX19_05260 0.73 -1.2 795,205 - MPMX19_05260 0.73 -0.2 795,205 - MPMX19_05260 0.73 -1.1 795,205 - MPMX19_05260 0.73 -0.1 795,216 + MPMX19_05260 0.74 -0.6 795,216 + MPMX19_05260 0.74 +0.0 795,216 + MPMX19_05260 0.74 +1.4 795,216 + MPMX19_05260 0.74 -0.7 795,216 + MPMX19_05260 0.74 -0.0 795,217 - MPMX19_05260 0.74 -0.4 795,234 + MPMX19_05260 0.74 -0.4 795,234 + MPMX19_05260 0.74 -0.8 795,234 + MPMX19_05260 0.74 +0.4 795,234 + MPMX19_05260 0.74 +0.5 795,235 - MPMX19_05260 0.74 -0.4 795,235 - MPMX19_05260 0.74 +1.3 795,345 + MPMX19_05260 0.78 +1.6 795,345 + MPMX19_05260 0.78 -0.4 795,345 + MPMX19_05260 0.78 -0.1 795,345 + MPMX19_05260 0.78 -0.0 795,345 + MPMX19_05260 0.78 -1.0 795,345 + MPMX19_05260 0.78 -0.5 795,345 + MPMX19_05260 0.78 -1.2 795,346 - MPMX19_05260 0.78 +0.3 795,346 - MPMX19_05260 0.78 +0.6 795,346 - MPMX19_05260 0.78 +0.5 795,346 - MPMX19_05260 0.78 +0.5 795,346 - MPMX19_05260 0.78 -0.6 795,346 - MPMX19_05260 0.78 +0.2 795,346 - MPMX19_05260 0.78 -0.7 795,346 - MPMX19_05260 0.78 -2.5 795,346 - MPMX19_05260 0.78 -0.8 795,346 - MPMX19_05260 0.78 -1.6 795,346 - MPMX19_05260 0.78 +0.4 795,471 + MPMX19_05260 0.82 +0.2 795,471 + MPMX19_05260 0.82 +0.6 795,471 + MPMX19_05260 0.82 -1.2 795,471 + MPMX19_05260 0.82 +0.3 795,471 + MPMX19_05260 0.82 +2.0 795,472 - MPMX19_05260 0.82 +0.8 795,472 - MPMX19_05260 0.82 -0.6 795,472 - MPMX19_05260 0.82 +0.5 795,472 - MPMX19_05260 0.82 -1.0 795,472 - MPMX19_05260 0.82 -0.2 795,472 - MPMX19_05260 0.82 -0.9 795,472 - MPMX19_05260 0.82 -0.1 795,472 - MPMX19_05260 0.82 +1.0 795,600 + MPMX19_05260 0.86 -0.7 795,600 + MPMX19_05260 0.86 +0.6 795,600 + MPMX19_05260 0.86 +0.1 795,600 + MPMX19_05260 0.86 +0.5 795,600 + MPMX19_05260 0.86 -0.6 795,600 + MPMX19_05260 0.86 +0.4 795,601 - MPMX19_05260 0.86 -1.5 795,601 - MPMX19_05260 0.86 -0.4 795,601 - MPMX19_05260 0.86 +1.3 795,601 - MPMX19_05260 0.86 -0.6 795,601 - MPMX19_05260 0.86 -0.4 795,601 - MPMX19_05260 0.86 -0.6 795,601 - MPMX19_05260 0.86 +0.1 795,601 - MPMX19_05260 0.86 +0.9 795,605 - MPMX19_05260 0.86 -0.2 795,605 - MPMX19_05260 0.86 +0.3 795,612 + MPMX19_05260 0.86 +0.3 795,612 + MPMX19_05260 0.86 +0.4 795,613 - MPMX19_05260 0.86 +0.4 795,613 - MPMX19_05260 0.86 -0.1 795,669 + MPMX19_05260 0.88 -1.0 795,670 - MPMX19_05260 0.88 +0.3 795,670 - MPMX19_05260 0.88 +0.4 795,702 + MPMX19_05260 0.89 +0.1 795,703 - MPMX19_05260 0.89 -0.4 795,703 - MPMX19_05260 0.89 +0.1 795,780 + +1.3 795,780 + -1.0 795,780 + -0.4 795,780 + -1.5 795,780 + -0.9 795,781 - -0.3 795,781 - -1.0 795,781 - -0.7 795,798 + -1.7 795,798 + -0.3 795,798 + +2.0 795,798 + -0.2 795,798 + -0.5 795,798 + -1.8 795,798 + -1.5 795,798 + -0.8 795,799 - -0.8 795,799 - -1.4 795,799 - -1.3 795,799 - -1.5 795,799 - -1.6 795,799 - +0.4 795,799 - -1.0 795,799 - +0.2 795,799 - +0.5 795,799 - +0.0 795,799 - +0.5 795,801 + -2.0 795,801 + +0.5 795,802 - -0.7 795,802 - -0.5 795,802 - +0.6 795,802 - -0.7 795,942 + +0.1 795,942 + -0.5 795,942 + -1.2 795,942 + -1.1 796,160 + MPMX19_05261 0.11 -0.2 796,160 + MPMX19_05261 0.11 +0.4 796,161 - MPMX19_05261 0.11 -1.5 796,622 + MPMX19_05261 0.52 +1.0 796,622 + MPMX19_05261 0.52 -1.1 796,622 + MPMX19_05261 0.52 +0.9 796,622 + MPMX19_05261 0.52 -0.1 796,622 + MPMX19_05261 0.52 +0.1 796,623 - MPMX19_05261 0.52 +0.5 796,623 - MPMX19_05261 0.52 +0.0 796,623 - MPMX19_05261 0.52 -0.5 796,623 - MPMX19_05261 0.52 -1.5 796,623 - MPMX19_05261 0.52 +0.2 796,623 - MPMX19_05261 0.52 -0.8 796,623 - MPMX19_05261 0.52 -0.7 796,712 + MPMX19_05261 0.60 -0.1 796,712 + MPMX19_05261 0.60 -0.6 796,713 - MPMX19_05261 0.60 -1.2 796,713 - MPMX19_05261 0.60 -2.1 796,713 - MPMX19_05261 0.60 -0.2 796,713 - MPMX19_05261 0.60 +0.6 796,754 + MPMX19_05261 0.64 +0.1 796,755 - MPMX19_05261 0.64 -1.0 797,158 - -1.7 797,158 - +0.6 797,158 - -1.0 797,158 - -0.6 797,159 - +0.6 797,185 + -0.4 797,186 - +0.4 797,186 - -0.4 797,186 - -1.8 797,190 + +0.0 797,190 + -1.1 797,191 - -1.1 797,191 - -0.6 797,191 - +0.2 797,197 - -0.8 797,204 + -0.2 797,205 - -0.7 797,205 - -2.3 797,239 + -0.2 797,240 - -0.4 797,240 - -2.2 797,240 - -1.0 797,351 - MPMX19_05262 0.16 -0.0 797,410 + MPMX19_05262 0.26 +0.5 797,410 + MPMX19_05262 0.26 -0.8 797,410 + MPMX19_05262 0.26 +0.2 797,410 + MPMX19_05262 0.26 -0.1 797,411 - MPMX19_05262 0.26 -0.4 797,411 - MPMX19_05262 0.26 +0.0 797,411 - MPMX19_05262 0.26 +0.2 797,411 - MPMX19_05262 0.26 -0.4 797,411 - MPMX19_05262 0.26 -0.7 797,411 - MPMX19_05262 0.26 +0.0 797,411 - MPMX19_05262 0.26 -1.2 797,440 + MPMX19_05262 0.30 +0.3 797,440 + MPMX19_05262 0.30 -0.5 797,440 + MPMX19_05262 0.30 -0.5 797,440 + MPMX19_05262 0.30 -0.5 797,440 + MPMX19_05262 0.30 -1.5 797,440 + MPMX19_05262 0.30 -1.8 797,440 + MPMX19_05262 0.30 +0.3 797,440 + MPMX19_05262 0.30 -0.4 797,440 + MPMX19_05262 0.30 +0.0 797,441 - MPMX19_05262 0.30 -1.0 797,441 - MPMX19_05262 0.30 +0.7 797,441 - MPMX19_05262 0.30 -0.0 797,441 - MPMX19_05262 0.30 -0.4 797,638 + MPMX19_05262 0.62 -2.0 797,638 + MPMX19_05262 0.62 -0.5 797,639 - MPMX19_05262 0.62 -0.1 797,639 - MPMX19_05262 0.62 -0.1 797,639 - MPMX19_05262 0.62 -0.5 797,776 + MPMX19_05262 0.83 -0.6 797,776 + MPMX19_05262 0.83 -1.0 797,776 + MPMX19_05262 0.83 -0.5 797,777 - MPMX19_05262 0.84 +0.7 797,777 - MPMX19_05262 0.84 +0.6 797,789 + MPMX19_05262 0.85 -2.7 797,789 + MPMX19_05262 0.85 -1.4 797,789 + MPMX19_05262 0.85 +0.2 797,790 - MPMX19_05262 0.86 +0.3 797,888 + -0.4 797,889 - -1.4 797,903 + +1.3 797,903 + -1.1 797,903 + -1.0 797,904 - +0.4 798,062 + MPMX19_05263 0.12 +1.0 798,063 - MPMX19_05263 0.12 -0.2 798,063 - MPMX19_05263 0.12 +2.6 798,063 - MPMX19_05263 0.12 +0.8 798,080 + MPMX19_05263 0.14 +0.1 798,080 + MPMX19_05263 0.14 -1.0 798,081 - MPMX19_05263 0.14 -1.1 798,081 - MPMX19_05263 0.14 +1.4 798,081 - MPMX19_05263 0.14 -2.0
Or see this region's nucleotide sequence