Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05212 and MPMX19_05213 are separated by 16 nucleotides MPMX19_05213 and MPMX19_05214 overlap by 11 nucleotides MPMX19_05214 and MPMX19_05215 overlap by 26 nucleotides MPMX19_05215 and MPMX19_05216 are separated by 38 nucleotides
MPMX19_05212: MPMX19_05212 - Beta-barrel assembly-enhancing protease, at 737,709 to 740,018
_05212
MPMX19_05213: MPMX19_05213 - hypothetical protein, at 740,035 to 740,313
_05213
MPMX19_05214: MPMX19_05214 - ECF RNA polymerase sigma factor SigE, at 740,303 to 740,983
_05214
MPMX19_05215: MPMX19_05215 - hypothetical protein, at 740,958 to 741,437
_05215
MPMX19_05216: MPMX19_05216 - hypothetical protein, at 741,476 to 743,158
_05216
Position (kb) 740
741
742 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 740.023 kb on + strand at 740.023 kb on + strand at 740.023 kb on + strand at 740.023 kb on + strand at 740.024 kb on - strand at 740.024 kb on - strand at 740.024 kb on - strand at 740.024 kb on - strand at 740.024 kb on - strand at 740.024 kb on - strand at 740.025 kb on + strand at 740.025 kb on + strand at 740.026 kb on - strand at 740.026 kb on - strand at 740.026 kb on - strand at 740.026 kb on - strand at 740.026 kb on - strand at 740.036 kb on + strand at 740.036 kb on + strand at 740.036 kb on + strand at 740.037 kb on - strand at 740.393 kb on + strand, within MPMX19_05214 at 740.393 kb on + strand, within MPMX19_05214 at 740.394 kb on - strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.402 kb on + strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.403 kb on - strand, within MPMX19_05214 at 740.441 kb on + strand, within MPMX19_05214 at 740.441 kb on + strand, within MPMX19_05214 at 740.441 kb on + strand, within MPMX19_05214 at 740.455 kb on - strand, within MPMX19_05214 at 740.455 kb on - strand, within MPMX19_05214 at 740.646 kb on + strand, within MPMX19_05214 at 740.778 kb on + strand, within MPMX19_05214 at 740.778 kb on + strand, within MPMX19_05214 at 740.778 kb on + strand, within MPMX19_05214 at 740.778 kb on + strand, within MPMX19_05214 at 740.778 kb on + strand, within MPMX19_05214 at 740.778 kb on + strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.779 kb on - strand, within MPMX19_05214 at 740.814 kb on + strand, within MPMX19_05214 at 740.815 kb on - strand, within MPMX19_05214 at 741.181 kb on + strand, within MPMX19_05215 at 741.181 kb on + strand, within MPMX19_05215 at 741.181 kb on + strand, within MPMX19_05215 at 741.181 kb on + strand, within MPMX19_05215 at 741.181 kb on + strand, within MPMX19_05215 at 741.182 kb on - strand, within MPMX19_05215 at 741.349 kb on + strand, within MPMX19_05215 at 741.349 kb on + strand, within MPMX19_05215 at 741.349 kb on + strand, within MPMX19_05215 at 741.349 kb on + strand, within MPMX19_05215 at 741.349 kb on + strand, within MPMX19_05215 at 741.350 kb on - strand, within MPMX19_05215 at 741.350 kb on - strand, within MPMX19_05215 at 741.400 kb on + strand at 741.401 kb on - strand at 741.401 kb on - strand at 741.401 kb on - strand at 741.421 kb on + strand at 741.451 kb on + strand at 741.452 kb on - strand at 741.501 kb on + strand at 741.501 kb on + strand at 741.501 kb on + strand at 741.501 kb on + strand at 741.502 kb on - strand at 741.502 kb on - strand at 741.502 kb on - strand at 741.502 kb on - strand at 741.502 kb on - strand at 741.502 kb on - strand at 741.502 kb on - strand at 741.558 kb on + strand at 741.558 kb on + strand at 741.559 kb on - strand at 741.559 kb on - strand at 741.559 kb on - strand at 741.559 kb on - strand at 741.561 kb on + strand at 741.561 kb on + strand at 741.561 kb on + strand at 741.561 kb on + strand at 741.562 kb on - strand at 741.582 kb on + strand at 741.582 kb on + strand at 741.582 kb on + strand at 741.582 kb on + strand at 741.582 kb on + strand at 741.583 kb on - strand at 741.583 kb on - strand at 741.678 kb on + strand, within MPMX19_05216 at 741.678 kb on + strand, within MPMX19_05216 at 741.678 kb on + strand, within MPMX19_05216 at 741.679 kb on - strand, within MPMX19_05216 at 741.679 kb on - strand, within MPMX19_05216 at 741.679 kb on - strand, within MPMX19_05216 at 741.679 kb on - strand, within MPMX19_05216 at 741.679 kb on - strand, within MPMX19_05216 at 741.679 kb on - strand, within MPMX19_05216 at 741.768 kb on + strand, within MPMX19_05216 at 741.769 kb on - strand, within MPMX19_05216 at 741.769 kb on - strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.789 kb on + strand, within MPMX19_05216 at 741.790 kb on - strand, within MPMX19_05216 at 741.790 kb on - strand, within MPMX19_05216 at 741.790 kb on - strand, within MPMX19_05216 at 741.790 kb on - strand, within MPMX19_05216 at 741.890 kb on + strand, within MPMX19_05216 at 741.934 kb on - strand, within MPMX19_05216 at 741.934 kb on - strand, within MPMX19_05216 at 742.245 kb on + strand, within MPMX19_05216 at 742.254 kb on + strand, within MPMX19_05216 at 742.254 kb on + strand, within MPMX19_05216 at 742.254 kb on + strand, within MPMX19_05216 at 742.254 kb on + strand, within MPMX19_05216 at 742.254 kb on + strand, within MPMX19_05216 at 742.255 kb on - strand, within MPMX19_05216 at 742.255 kb on - strand, within MPMX19_05216 at 742.255 kb on - strand, within MPMX19_05216 at 742.345 kb on - strand, within MPMX19_05216 at 742.345 kb on - strand, within MPMX19_05216 at 742.345 kb on - strand, within MPMX19_05216 at 742.345 kb on - strand, within MPMX19_05216 at 742.345 kb on - strand, within MPMX19_05216 at 742.345 kb on - strand, within MPMX19_05216
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 740,023 + -1.5 740,023 + +0.7 740,023 + -0.7 740,023 + -1.7 740,024 - +0.2 740,024 - -1.8 740,024 - -0.2 740,024 - -1.6 740,024 - +0.4 740,024 - -0.1 740,025 + -0.8 740,025 + -1.2 740,026 - -0.6 740,026 - -0.1 740,026 - +0.4 740,026 - -0.9 740,026 - -2.0 740,036 + -1.5 740,036 + -0.4 740,036 + -3.5 740,037 - +0.5 740,393 + MPMX19_05214 0.13 +0.8 740,393 + MPMX19_05214 0.13 -1.1 740,394 - MPMX19_05214 0.13 +0.1 740,402 + MPMX19_05214 0.15 -0.8 740,402 + MPMX19_05214 0.15 -1.8 740,402 + MPMX19_05214 0.15 +0.4 740,402 + MPMX19_05214 0.15 +0.6 740,402 + MPMX19_05214 0.15 +1.2 740,402 + MPMX19_05214 0.15 +1.1 740,402 + MPMX19_05214 0.15 +0.6 740,402 + MPMX19_05214 0.15 +0.1 740,402 + MPMX19_05214 0.15 -1.4 740,403 - MPMX19_05214 0.15 -0.3 740,403 - MPMX19_05214 0.15 -2.2 740,403 - MPMX19_05214 0.15 +0.4 740,403 - MPMX19_05214 0.15 +0.9 740,403 - MPMX19_05214 0.15 -0.5 740,403 - MPMX19_05214 0.15 -0.5 740,403 - MPMX19_05214 0.15 -0.7 740,403 - MPMX19_05214 0.15 -1.2 740,403 - MPMX19_05214 0.15 -0.2 740,403 - MPMX19_05214 0.15 -0.8 740,403 - MPMX19_05214 0.15 +0.0 740,403 - MPMX19_05214 0.15 -0.1 740,441 + MPMX19_05214 0.20 -0.9 740,441 + MPMX19_05214 0.20 -1.9 740,441 + MPMX19_05214 0.20 -0.7 740,455 - MPMX19_05214 0.22 +0.4 740,455 - MPMX19_05214 0.22 -1.7 740,646 + MPMX19_05214 0.50 -0.6 740,778 + MPMX19_05214 0.70 -2.1 740,778 + MPMX19_05214 0.70 -1.4 740,778 + MPMX19_05214 0.70 +0.2 740,778 + MPMX19_05214 0.70 +0.4 740,778 + MPMX19_05214 0.70 +0.4 740,778 + MPMX19_05214 0.70 -0.3 740,779 - MPMX19_05214 0.70 +0.5 740,779 - MPMX19_05214 0.70 +0.9 740,779 - MPMX19_05214 0.70 +0.2 740,779 - MPMX19_05214 0.70 +1.5 740,779 - MPMX19_05214 0.70 -0.2 740,779 - MPMX19_05214 0.70 +0.3 740,779 - MPMX19_05214 0.70 -1.0 740,779 - MPMX19_05214 0.70 -0.2 740,779 - MPMX19_05214 0.70 +1.6 740,814 + MPMX19_05214 0.75 -0.7 740,815 - MPMX19_05214 0.75 +0.3 741,181 + MPMX19_05215 0.46 -1.2 741,181 + MPMX19_05215 0.46 -1.7 741,181 + MPMX19_05215 0.46 +0.0 741,181 + MPMX19_05215 0.46 -1.3 741,181 + MPMX19_05215 0.46 -2.2 741,182 - MPMX19_05215 0.47 -0.1 741,349 + MPMX19_05215 0.81 +0.3 741,349 + MPMX19_05215 0.81 -0.1 741,349 + MPMX19_05215 0.81 -0.7 741,349 + MPMX19_05215 0.81 -0.1 741,349 + MPMX19_05215 0.81 -1.5 741,350 - MPMX19_05215 0.82 +0.2 741,350 - MPMX19_05215 0.82 -0.7 741,400 + -0.4 741,401 - -0.7 741,401 - +0.4 741,401 - +0.5 741,421 + -1.4 741,451 + +0.8 741,452 - +1.4 741,501 + -0.4 741,501 + +0.3 741,501 + -1.0 741,501 + -1.1 741,502 - -0.4 741,502 - -1.0 741,502 - -0.5 741,502 - -0.0 741,502 - -0.7 741,502 - -1.6 741,502 - +0.0 741,558 + -1.4 741,558 + -0.3 741,559 - -1.2 741,559 - -0.1 741,559 - -0.2 741,559 - -0.8 741,561 + -0.5 741,561 + -0.4 741,561 + +0.3 741,561 + -0.5 741,562 - -1.5 741,582 + -0.6 741,582 + -1.2 741,582 + -0.2 741,582 + -1.0 741,582 + -0.6 741,583 - -1.9 741,583 - +1.3 741,678 + MPMX19_05216 0.12 -0.7 741,678 + MPMX19_05216 0.12 -0.2 741,678 + MPMX19_05216 0.12 -2.1 741,679 - MPMX19_05216 0.12 -0.9 741,679 - MPMX19_05216 0.12 -0.2 741,679 - MPMX19_05216 0.12 +0.1 741,679 - MPMX19_05216 0.12 +0.7 741,679 - MPMX19_05216 0.12 -0.2 741,679 - MPMX19_05216 0.12 -0.4 741,768 + MPMX19_05216 0.17 -1.7 741,769 - MPMX19_05216 0.17 -0.1 741,769 - MPMX19_05216 0.17 -0.4 741,789 + MPMX19_05216 0.19 +0.2 741,789 + MPMX19_05216 0.19 +0.0 741,789 + MPMX19_05216 0.19 +0.6 741,789 + MPMX19_05216 0.19 -0.0 741,789 + MPMX19_05216 0.19 -1.2 741,789 + MPMX19_05216 0.19 -0.0 741,789 + MPMX19_05216 0.19 -1.7 741,789 + MPMX19_05216 0.19 -1.0 741,789 + MPMX19_05216 0.19 -2.2 741,789 + MPMX19_05216 0.19 -1.8 741,789 + MPMX19_05216 0.19 +0.5 741,790 - MPMX19_05216 0.19 -1.0 741,790 - MPMX19_05216 0.19 +0.5 741,790 - MPMX19_05216 0.19 -0.1 741,790 - MPMX19_05216 0.19 -0.8 741,890 + MPMX19_05216 0.25 +0.3 741,934 - MPMX19_05216 0.27 -1.4 741,934 - MPMX19_05216 0.27 -0.2 742,245 + MPMX19_05216 0.46 +0.5 742,254 + MPMX19_05216 0.46 +0.2 742,254 + MPMX19_05216 0.46 +0.0 742,254 + MPMX19_05216 0.46 -0.4 742,254 + MPMX19_05216 0.46 +0.2 742,254 + MPMX19_05216 0.46 -0.7 742,255 - MPMX19_05216 0.46 -1.8 742,255 - MPMX19_05216 0.46 +0.0 742,255 - MPMX19_05216 0.46 -0.1 742,345 - MPMX19_05216 0.52 -0.7 742,345 - MPMX19_05216 0.52 -0.4 742,345 - MPMX19_05216 0.52 -1.0 742,345 - MPMX19_05216 0.52 -1.2 742,345 - MPMX19_05216 0.52 -1.0 742,345 - MPMX19_05216 0.52 +0.5
Or see this region's nucleotide sequence