Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05210 and MPMX19_05211 are separated by 212 nucleotides MPMX19_05211 and MPMX19_05212 are separated by 138 nucleotides
MPMX19_05210: MPMX19_05210 - Delta(1)-pyrroline-2-carboxylate reductase 1, at 735,868 to 736,800
_05210
MPMX19_05211: MPMX19_05211 - hypothetical protein, at 737,013 to 737,570
_05211
MPMX19_05212: MPMX19_05212 - Beta-barrel assembly-enhancing protease, at 737,709 to 740,018
_05212
Position (kb) 737
738 Strain fitness (log2 ratio) -2
-1
0
1 at 736.115 kb on + strand, within MPMX19_05210 at 736.115 kb on + strand, within MPMX19_05210 at 736.115 kb on + strand, within MPMX19_05210 at 736.116 kb on - strand, within MPMX19_05210 at 736.116 kb on - strand, within MPMX19_05210 at 736.116 kb on - strand, within MPMX19_05210 at 736.185 kb on - strand, within MPMX19_05210 at 736.185 kb on - strand, within MPMX19_05210 at 736.185 kb on - strand, within MPMX19_05210 at 736.237 kb on + strand, within MPMX19_05210 at 736.237 kb on + strand, within MPMX19_05210 at 736.237 kb on + strand, within MPMX19_05210 at 736.238 kb on - strand, within MPMX19_05210 at 736.238 kb on - strand, within MPMX19_05210 at 736.347 kb on - strand, within MPMX19_05210 at 736.373 kb on + strand, within MPMX19_05210 at 736.373 kb on + strand, within MPMX19_05210 at 736.374 kb on - strand, within MPMX19_05210 at 736.374 kb on - strand, within MPMX19_05210 at 736.374 kb on - strand, within MPMX19_05210 at 736.374 kb on - strand, within MPMX19_05210 at 736.374 kb on - strand, within MPMX19_05210 at 736.526 kb on + strand, within MPMX19_05210 at 736.526 kb on + strand, within MPMX19_05210 at 736.526 kb on + strand, within MPMX19_05210 at 736.527 kb on - strand, within MPMX19_05210 at 736.527 kb on - strand, within MPMX19_05210 at 736.527 kb on - strand, within MPMX19_05210 at 736.700 kb on + strand, within MPMX19_05210 at 736.700 kb on + strand, within MPMX19_05210 at 736.701 kb on - strand, within MPMX19_05210 at 736.846 kb on + strand at 736.846 kb on + strand at 736.846 kb on + strand at 736.846 kb on + strand at 736.846 kb on + strand at 736.846 kb on + strand at 736.846 kb on + strand at 736.847 kb on - strand at 736.847 kb on - strand at 736.847 kb on - strand at 736.847 kb on - strand at 736.847 kb on - strand at 736.847 kb on - strand at 736.848 kb on + strand at 736.849 kb on - strand at 736.849 kb on - strand at 736.884 kb on + strand at 736.904 kb on + strand at 736.905 kb on - strand at 736.905 kb on - strand at 736.905 kb on - strand at 736.905 kb on - strand at 736.906 kb on + strand at 736.906 kb on + strand at 736.906 kb on + strand at 736.907 kb on - strand at 736.907 kb on - strand at 737.139 kb on + strand, within MPMX19_05211 at 737.139 kb on + strand, within MPMX19_05211 at 737.139 kb on + strand, within MPMX19_05211 at 737.139 kb on + strand, within MPMX19_05211 at 737.140 kb on - strand, within MPMX19_05211 at 737.140 kb on - strand, within MPMX19_05211 at 737.188 kb on + strand, within MPMX19_05211 at 737.189 kb on - strand, within MPMX19_05211 at 737.189 kb on - strand, within MPMX19_05211 at 737.189 kb on - strand, within MPMX19_05211 at 737.283 kb on + strand, within MPMX19_05211 at 737.403 kb on + strand, within MPMX19_05211 at 737.403 kb on + strand, within MPMX19_05211 at 737.403 kb on + strand, within MPMX19_05211 at 737.403 kb on + strand, within MPMX19_05211 at 737.403 kb on + strand, within MPMX19_05211 at 737.403 kb on + strand, within MPMX19_05211 at 737.403 kb on + strand, within MPMX19_05211 at 737.403 kb on + strand, within MPMX19_05211 at 737.403 kb on + strand, within MPMX19_05211 at 737.404 kb on - strand, within MPMX19_05211 at 737.404 kb on - strand, within MPMX19_05211 at 737.404 kb on - strand, within MPMX19_05211 at 737.404 kb on - strand, within MPMX19_05211 at 737.404 kb on - strand, within MPMX19_05211 at 737.404 kb on - strand, within MPMX19_05211 at 737.404 kb on - strand, within MPMX19_05211 at 737.404 kb on - strand, within MPMX19_05211 at 737.404 kb on - strand, within MPMX19_05211 at 737.404 kb on - strand, within MPMX19_05211 at 737.404 kb on - strand, within MPMX19_05211 at 737.404 kb on - strand, within MPMX19_05211 at 737.404 kb on - strand, within MPMX19_05211 at 737.404 kb on - strand, within MPMX19_05211 at 737.439 kb on + strand, within MPMX19_05211 at 737.439 kb on + strand, within MPMX19_05211 at 737.439 kb on + strand, within MPMX19_05211 at 737.439 kb on + strand, within MPMX19_05211 at 737.439 kb on + strand, within MPMX19_05211 at 737.440 kb on - strand, within MPMX19_05211 at 737.440 kb on - strand, within MPMX19_05211 at 737.440 kb on - strand, within MPMX19_05211 at 737.440 kb on - strand, within MPMX19_05211 at 737.440 kb on - strand, within MPMX19_05211 at 737.440 kb on - strand, within MPMX19_05211 at 737.440 kb on - strand, within MPMX19_05211 at 737.440 kb on - strand, within MPMX19_05211 at 737.442 kb on + strand, within MPMX19_05211 at 737.442 kb on + strand, within MPMX19_05211 at 737.442 kb on + strand, within MPMX19_05211 at 737.442 kb on + strand, within MPMX19_05211 at 737.442 kb on + strand, within MPMX19_05211 at 737.442 kb on + strand, within MPMX19_05211 at 737.442 kb on + strand, within MPMX19_05211 at 737.443 kb on - strand, within MPMX19_05211 at 737.443 kb on - strand, within MPMX19_05211 at 737.443 kb on - strand, within MPMX19_05211 at 737.443 kb on - strand, within MPMX19_05211 at 737.443 kb on - strand, within MPMX19_05211 at 737.443 kb on - strand, within MPMX19_05211 at 737.443 kb on - strand, within MPMX19_05211 at 737.443 kb on - strand, within MPMX19_05211 at 737.478 kb on + strand, within MPMX19_05211 at 737.478 kb on + strand, within MPMX19_05211 at 737.478 kb on + strand, within MPMX19_05211 at 737.478 kb on + strand, within MPMX19_05211 at 737.479 kb on - strand, within MPMX19_05211 at 737.479 kb on - strand, within MPMX19_05211 at 737.571 kb on + strand at 737.571 kb on + strand at 737.571 kb on + strand at 737.571 kb on + strand at 737.571 kb on + strand at 737.571 kb on + strand at 737.571 kb on + strand at 737.571 kb on + strand at 737.572 kb on - strand at 737.572 kb on - strand at 737.572 kb on - strand at 737.572 kb on - strand at 737.572 kb on - strand at 737.572 kb on - strand at 737.572 kb on - strand at 737.572 kb on - strand at 737.572 kb on - strand at 737.572 kb on - strand at 737.581 kb on + strand at 737.581 kb on + strand at 737.581 kb on + strand at 737.582 kb on - strand at 737.582 kb on - strand at 737.582 kb on - strand at 737.636 kb on + strand at 737.636 kb on + strand at 737.636 kb on + strand at 737.732 kb on + strand at 737.802 kb on + strand at 737.802 kb on + strand at 737.803 kb on - strand at 737.943 kb on + strand, within MPMX19_05212 at 737.943 kb on + strand, within MPMX19_05212 at 737.943 kb on + strand, within MPMX19_05212 at 737.943 kb on + strand, within MPMX19_05212 at 737.943 kb on + strand, within MPMX19_05212 at 737.943 kb on + strand, within MPMX19_05212 at 737.943 kb on + strand, within MPMX19_05212 at 737.943 kb on + strand, within MPMX19_05212 at 737.944 kb on - strand, within MPMX19_05212 at 737.944 kb on - strand, within MPMX19_05212 at 737.944 kb on - strand, within MPMX19_05212 at 738.313 kb on - strand, within MPMX19_05212 at 738.415 kb on - strand, within MPMX19_05212
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 736,115 + MPMX19_05210 0.26 -1.2 736,115 + MPMX19_05210 0.26 -0.4 736,115 + MPMX19_05210 0.26 +1.0 736,116 - MPMX19_05210 0.27 -1.8 736,116 - MPMX19_05210 0.27 +1.2 736,116 - MPMX19_05210 0.27 -0.5 736,185 - MPMX19_05210 0.34 -2.2 736,185 - MPMX19_05210 0.34 -1.1 736,185 - MPMX19_05210 0.34 +1.0 736,237 + MPMX19_05210 0.40 -1.7 736,237 + MPMX19_05210 0.40 -0.6 736,237 + MPMX19_05210 0.40 -0.4 736,238 - MPMX19_05210 0.40 -1.5 736,238 - MPMX19_05210 0.40 -0.4 736,347 - MPMX19_05210 0.51 -1.2 736,373 + MPMX19_05210 0.54 -1.0 736,373 + MPMX19_05210 0.54 -1.0 736,374 - MPMX19_05210 0.54 -1.0 736,374 - MPMX19_05210 0.54 -1.0 736,374 - MPMX19_05210 0.54 -1.8 736,374 - MPMX19_05210 0.54 +0.2 736,374 - MPMX19_05210 0.54 -2.6 736,526 + MPMX19_05210 0.71 -0.2 736,526 + MPMX19_05210 0.71 -0.7 736,526 + MPMX19_05210 0.71 -1.1 736,527 - MPMX19_05210 0.71 -1.5 736,527 - MPMX19_05210 0.71 -0.7 736,527 - MPMX19_05210 0.71 -0.1 736,700 + MPMX19_05210 0.89 -0.2 736,700 + MPMX19_05210 0.89 -0.6 736,701 - MPMX19_05210 0.89 -1.1 736,846 + -0.7 736,846 + -1.7 736,846 + -1.5 736,846 + -0.3 736,846 + -0.4 736,846 + -0.8 736,846 + +0.9 736,847 - -0.6 736,847 - +1.2 736,847 - -1.2 736,847 - -1.0 736,847 - +1.0 736,847 - -0.3 736,848 + -0.7 736,849 - -0.2 736,849 - -1.8 736,884 + -0.2 736,904 + +0.1 736,905 - +0.3 736,905 - -0.4 736,905 - -0.7 736,905 - +0.2 736,906 + -1.5 736,906 + -1.3 736,906 + -1.2 736,907 - +0.9 736,907 - -0.7 737,139 + MPMX19_05211 0.23 -0.0 737,139 + MPMX19_05211 0.23 +1.0 737,139 + MPMX19_05211 0.23 -0.5 737,139 + MPMX19_05211 0.23 +1.6 737,140 - MPMX19_05211 0.23 -0.5 737,140 - MPMX19_05211 0.23 -0.9 737,188 + MPMX19_05211 0.31 -1.7 737,189 - MPMX19_05211 0.32 -1.5 737,189 - MPMX19_05211 0.32 +0.5 737,189 - MPMX19_05211 0.32 +0.4 737,283 + MPMX19_05211 0.48 -0.4 737,403 + MPMX19_05211 0.70 -1.4 737,403 + MPMX19_05211 0.70 -1.0 737,403 + MPMX19_05211 0.70 -0.4 737,403 + MPMX19_05211 0.70 +0.7 737,403 + MPMX19_05211 0.70 -1.2 737,403 + MPMX19_05211 0.70 +0.2 737,403 + MPMX19_05211 0.70 +0.6 737,403 + MPMX19_05211 0.70 -0.7 737,403 + MPMX19_05211 0.70 -1.2 737,404 - MPMX19_05211 0.70 -0.3 737,404 - MPMX19_05211 0.70 -0.3 737,404 - MPMX19_05211 0.70 +0.3 737,404 - MPMX19_05211 0.70 -1.3 737,404 - MPMX19_05211 0.70 -0.7 737,404 - MPMX19_05211 0.70 +0.4 737,404 - MPMX19_05211 0.70 -1.2 737,404 - MPMX19_05211 0.70 -0.4 737,404 - MPMX19_05211 0.70 +0.1 737,404 - MPMX19_05211 0.70 -0.3 737,404 - MPMX19_05211 0.70 -1.6 737,404 - MPMX19_05211 0.70 -0.7 737,404 - MPMX19_05211 0.70 -0.5 737,404 - MPMX19_05211 0.70 -1.5 737,439 + MPMX19_05211 0.76 -0.2 737,439 + MPMX19_05211 0.76 -1.0 737,439 + MPMX19_05211 0.76 +0.3 737,439 + MPMX19_05211 0.76 -0.5 737,439 + MPMX19_05211 0.76 +0.0 737,440 - MPMX19_05211 0.77 +0.9 737,440 - MPMX19_05211 0.77 -0.7 737,440 - MPMX19_05211 0.77 +1.0 737,440 - MPMX19_05211 0.77 -1.5 737,440 - MPMX19_05211 0.77 -1.2 737,440 - MPMX19_05211 0.77 -0.3 737,440 - MPMX19_05211 0.77 -1.1 737,440 - MPMX19_05211 0.77 +0.1 737,442 + MPMX19_05211 0.77 -0.2 737,442 + MPMX19_05211 0.77 -0.7 737,442 + MPMX19_05211 0.77 +0.2 737,442 + MPMX19_05211 0.77 -0.7 737,442 + MPMX19_05211 0.77 -0.2 737,442 + MPMX19_05211 0.77 -0.4 737,442 + MPMX19_05211 0.77 +0.7 737,443 - MPMX19_05211 0.77 -0.2 737,443 - MPMX19_05211 0.77 -1.5 737,443 - MPMX19_05211 0.77 -1.8 737,443 - MPMX19_05211 0.77 +0.9 737,443 - MPMX19_05211 0.77 -1.2 737,443 - MPMX19_05211 0.77 +0.5 737,443 - MPMX19_05211 0.77 -1.7 737,443 - MPMX19_05211 0.77 -1.8 737,478 + MPMX19_05211 0.83 -1.4 737,478 + MPMX19_05211 0.83 -0.5 737,478 + MPMX19_05211 0.83 +0.0 737,478 + MPMX19_05211 0.83 -0.0 737,479 - MPMX19_05211 0.84 -1.1 737,479 - MPMX19_05211 0.84 -0.1 737,571 + -0.5 737,571 + -2.2 737,571 + -2.1 737,571 + -0.7 737,571 + +1.6 737,571 + -0.9 737,571 + -1.2 737,571 + -1.2 737,572 - -0.2 737,572 - -0.3 737,572 - -0.9 737,572 - +0.0 737,572 - -1.3 737,572 - -0.7 737,572 - +0.0 737,572 - -1.0 737,572 - -0.3 737,572 - +0.0 737,581 + -0.2 737,581 + -0.2 737,581 + +0.5 737,582 - -1.8 737,582 - -0.1 737,582 - +0.0 737,636 + -0.7 737,636 + -0.1 737,636 + -1.2 737,732 + -0.3 737,802 + -0.4 737,802 + +0.5 737,803 - -1.5 737,943 + MPMX19_05212 0.10 +0.5 737,943 + MPMX19_05212 0.10 -1.7 737,943 + MPMX19_05212 0.10 -0.5 737,943 + MPMX19_05212 0.10 -0.2 737,943 + MPMX19_05212 0.10 -1.5 737,943 + MPMX19_05212 0.10 +0.3 737,943 + MPMX19_05212 0.10 -0.3 737,943 + MPMX19_05212 0.10 -0.0 737,944 - MPMX19_05212 0.10 +0.4 737,944 - MPMX19_05212 0.10 -1.4 737,944 - MPMX19_05212 0.10 -1.8 738,313 - MPMX19_05212 0.26 -0.8 738,415 - MPMX19_05212 0.31 -1.4
Or see this region's nucleotide sequence