Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05088 and MPMX19_05089 are separated by 0 nucleotides MPMX19_05089 and MPMX19_05090 overlap by 4 nucleotides
MPMX19_05088: MPMX19_05088 - Enterobactin exporter EntS, at 577,134 to 578,369
_05088
MPMX19_05089: MPMX19_05089 - Acetyl-CoA acetyltransferase, at 578,370 to 579,539
_05089
MPMX19_05090: MPMX19_05090 - putative acyl--CoA ligase YhfT, at 579,536 to 581,035
_05090
Position (kb) 578
579
580 Strain fitness (log2 ratio) -2
-1
0
1 at 577.458 kb on + strand, within MPMX19_05088 at 577.458 kb on + strand, within MPMX19_05088 at 577.458 kb on + strand, within MPMX19_05088 at 577.459 kb on - strand, within MPMX19_05088 at 577.459 kb on - strand, within MPMX19_05088 at 577.459 kb on - strand, within MPMX19_05088 at 577.459 kb on - strand, within MPMX19_05088 at 577.459 kb on - strand, within MPMX19_05088 at 577.459 kb on - strand, within MPMX19_05088 at 577.459 kb on - strand, within MPMX19_05088 at 577.624 kb on + strand, within MPMX19_05088 at 577.624 kb on + strand, within MPMX19_05088 at 577.624 kb on + strand, within MPMX19_05088 at 577.624 kb on + strand, within MPMX19_05088 at 577.624 kb on + strand, within MPMX19_05088 at 577.624 kb on + strand, within MPMX19_05088 at 577.624 kb on + strand, within MPMX19_05088 at 577.625 kb on - strand, within MPMX19_05088 at 577.625 kb on - strand, within MPMX19_05088 at 577.625 kb on - strand, within MPMX19_05088 at 577.625 kb on - strand, within MPMX19_05088 at 577.834 kb on + strand, within MPMX19_05088 at 577.834 kb on + strand, within MPMX19_05088 at 577.834 kb on + strand, within MPMX19_05088 at 577.834 kb on + strand, within MPMX19_05088 at 577.835 kb on - strand, within MPMX19_05088 at 577.835 kb on - strand, within MPMX19_05088 at 577.835 kb on - strand, within MPMX19_05088 at 577.835 kb on - strand, within MPMX19_05088 at 577.835 kb on - strand, within MPMX19_05088 at 577.858 kb on + strand, within MPMX19_05088 at 577.858 kb on + strand, within MPMX19_05088 at 577.858 kb on + strand, within MPMX19_05088 at 577.858 kb on + strand, within MPMX19_05088 at 577.858 kb on + strand, within MPMX19_05088 at 577.858 kb on + strand, within MPMX19_05088 at 577.858 kb on + strand, within MPMX19_05088 at 577.858 kb on + strand, within MPMX19_05088 at 577.858 kb on + strand, within MPMX19_05088 at 577.858 kb on + strand, within MPMX19_05088 at 577.858 kb on + strand, within MPMX19_05088 at 577.858 kb on + strand, within MPMX19_05088 at 577.859 kb on - strand, within MPMX19_05088 at 577.859 kb on - strand, within MPMX19_05088 at 577.859 kb on - strand, within MPMX19_05088 at 577.859 kb on - strand, within MPMX19_05088 at 577.859 kb on - strand, within MPMX19_05088 at 577.859 kb on - strand, within MPMX19_05088 at 577.859 kb on - strand, within MPMX19_05088 at 577.859 kb on - strand, within MPMX19_05088 at 577.859 kb on - strand, within MPMX19_05088 at 577.859 kb on - strand, within MPMX19_05088 at 577.859 kb on - strand, within MPMX19_05088 at 577.859 kb on - strand, within MPMX19_05088 at 577.859 kb on - strand, within MPMX19_05088 at 578.233 kb on + strand, within MPMX19_05088 at 578.233 kb on + strand, within MPMX19_05088 at 578.233 kb on + strand, within MPMX19_05088 at 578.233 kb on + strand, within MPMX19_05088 at 578.233 kb on + strand, within MPMX19_05088 at 578.233 kb on + strand, within MPMX19_05088 at 578.233 kb on + strand, within MPMX19_05088 at 578.233 kb on + strand, within MPMX19_05088 at 578.233 kb on + strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.234 kb on - strand, within MPMX19_05088 at 578.342 kb on + strand at 578.342 kb on + strand at 578.512 kb on + strand, within MPMX19_05089 at 578.897 kb on + strand, within MPMX19_05089 at 578.897 kb on + strand, within MPMX19_05089 at 579.038 kb on + strand, within MPMX19_05089 at 579.052 kb on + strand, within MPMX19_05089 at 579.052 kb on + strand, within MPMX19_05089 at 579.052 kb on + strand, within MPMX19_05089 at 579.052 kb on + strand, within MPMX19_05089 at 579.052 kb on + strand, within MPMX19_05089 at 579.053 kb on - strand, within MPMX19_05089 at 579.053 kb on - strand, within MPMX19_05089 at 579.053 kb on - strand, within MPMX19_05089 at 579.053 kb on - strand, within MPMX19_05089 at 579.130 kb on + strand, within MPMX19_05089 at 579.130 kb on + strand, within MPMX19_05089 at 579.131 kb on - strand, within MPMX19_05089 at 579.666 kb on + strand at 579.666 kb on + strand at 579.666 kb on + strand at 579.666 kb on + strand at 579.666 kb on + strand at 579.666 kb on + strand at 579.667 kb on - strand at 579.667 kb on - strand at 579.667 kb on - strand at 579.667 kb on - strand at 579.667 kb on - strand at 579.667 kb on - strand at 579.667 kb on - strand at 579.667 kb on - strand at 579.667 kb on - strand at 579.667 kb on - strand at 579.667 kb on - strand at 579.667 kb on - strand at 579.667 kb on - strand at 579.667 kb on - strand at 579.765 kb on + strand, within MPMX19_05090 at 579.766 kb on - strand, within MPMX19_05090 at 579.766 kb on - strand, within MPMX19_05090 at 579.871 kb on + strand, within MPMX19_05090 at 579.871 kb on + strand, within MPMX19_05090 at 579.871 kb on + strand, within MPMX19_05090 at 579.872 kb on - strand, within MPMX19_05090 at 579.872 kb on - strand, within MPMX19_05090 at 579.925 kb on - strand, within MPMX19_05090 at 579.987 kb on + strand, within MPMX19_05090 at 579.987 kb on + strand, within MPMX19_05090 at 579.987 kb on + strand, within MPMX19_05090 at 579.987 kb on + strand, within MPMX19_05090 at 579.988 kb on - strand, within MPMX19_05090 at 580.167 kb on + strand, within MPMX19_05090 at 580.167 kb on + strand, within MPMX19_05090 at 580.167 kb on + strand, within MPMX19_05090 at 580.167 kb on + strand, within MPMX19_05090 at 580.168 kb on - strand, within MPMX19_05090 at 580.168 kb on - strand, within MPMX19_05090 at 580.168 kb on - strand, within MPMX19_05090 at 580.168 kb on - strand, within MPMX19_05090 at 580.168 kb on - strand, within MPMX19_05090 at 580.170 kb on + strand, within MPMX19_05090 at 580.170 kb on + strand, within MPMX19_05090 at 580.171 kb on - strand, within MPMX19_05090 at 580.171 kb on - strand, within MPMX19_05090 at 580.171 kb on - strand, within MPMX19_05090 at 580.322 kb on + strand, within MPMX19_05090 at 580.437 kb on + strand, within MPMX19_05090 at 580.438 kb on - strand, within MPMX19_05090 at 580.438 kb on - strand, within MPMX19_05090 at 580.438 kb on - strand, within MPMX19_05090 at 580.438 kb on - strand, within MPMX19_05090
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 577,458 + MPMX19_05088 0.26 -0.0 577,458 + MPMX19_05088 0.26 +1.0 577,458 + MPMX19_05088 0.26 +0.1 577,459 - MPMX19_05088 0.26 -1.0 577,459 - MPMX19_05088 0.26 +0.3 577,459 - MPMX19_05088 0.26 -0.8 577,459 - MPMX19_05088 0.26 -1.7 577,459 - MPMX19_05088 0.26 -0.5 577,459 - MPMX19_05088 0.26 +0.8 577,459 - MPMX19_05088 0.26 -0.4 577,624 + MPMX19_05088 0.40 +0.6 577,624 + MPMX19_05088 0.40 +0.6 577,624 + MPMX19_05088 0.40 -1.1 577,624 + MPMX19_05088 0.40 -0.9 577,624 + MPMX19_05088 0.40 +1.4 577,624 + MPMX19_05088 0.40 -0.6 577,624 + MPMX19_05088 0.40 +0.6 577,625 - MPMX19_05088 0.40 -0.0 577,625 - MPMX19_05088 0.40 -0.9 577,625 - MPMX19_05088 0.40 -0.1 577,625 - MPMX19_05088 0.40 -0.9 577,834 + MPMX19_05088 0.57 -0.7 577,834 + MPMX19_05088 0.57 +0.2 577,834 + MPMX19_05088 0.57 +0.4 577,834 + MPMX19_05088 0.57 -2.3 577,835 - MPMX19_05088 0.57 -0.7 577,835 - MPMX19_05088 0.57 -0.7 577,835 - MPMX19_05088 0.57 +1.4 577,835 - MPMX19_05088 0.57 +0.3 577,835 - MPMX19_05088 0.57 +0.4 577,858 + MPMX19_05088 0.59 +0.1 577,858 + MPMX19_05088 0.59 -1.1 577,858 + MPMX19_05088 0.59 +0.3 577,858 + MPMX19_05088 0.59 +0.2 577,858 + MPMX19_05088 0.59 -0.9 577,858 + MPMX19_05088 0.59 -1.7 577,858 + MPMX19_05088 0.59 +0.3 577,858 + MPMX19_05088 0.59 +0.2 577,858 + MPMX19_05088 0.59 -1.9 577,858 + MPMX19_05088 0.59 -0.2 577,858 + MPMX19_05088 0.59 -0.8 577,858 + MPMX19_05088 0.59 +0.1 577,859 - MPMX19_05088 0.59 -0.1 577,859 - MPMX19_05088 0.59 +0.2 577,859 - MPMX19_05088 0.59 -0.5 577,859 - MPMX19_05088 0.59 +1.0 577,859 - MPMX19_05088 0.59 -0.5 577,859 - MPMX19_05088 0.59 +0.7 577,859 - MPMX19_05088 0.59 -1.7 577,859 - MPMX19_05088 0.59 -0.2 577,859 - MPMX19_05088 0.59 -1.7 577,859 - MPMX19_05088 0.59 +0.4 577,859 - MPMX19_05088 0.59 +0.3 577,859 - MPMX19_05088 0.59 +1.1 577,859 - MPMX19_05088 0.59 +0.1 578,233 + MPMX19_05088 0.89 -0.8 578,233 + MPMX19_05088 0.89 +0.4 578,233 + MPMX19_05088 0.89 -1.1 578,233 + MPMX19_05088 0.89 -0.8 578,233 + MPMX19_05088 0.89 -0.9 578,233 + MPMX19_05088 0.89 -1.3 578,233 + MPMX19_05088 0.89 +0.1 578,233 + MPMX19_05088 0.89 -0.6 578,233 + MPMX19_05088 0.89 -1.4 578,234 - MPMX19_05088 0.89 -1.6 578,234 - MPMX19_05088 0.89 +0.0 578,234 - MPMX19_05088 0.89 -0.6 578,234 - MPMX19_05088 0.89 -0.1 578,234 - MPMX19_05088 0.89 -0.1 578,234 - MPMX19_05088 0.89 -1.2 578,234 - MPMX19_05088 0.89 -0.9 578,234 - MPMX19_05088 0.89 +0.2 578,234 - MPMX19_05088 0.89 +0.2 578,234 - MPMX19_05088 0.89 -0.3 578,234 - MPMX19_05088 0.89 -0.4 578,234 - MPMX19_05088 0.89 -1.2 578,234 - MPMX19_05088 0.89 +0.1 578,234 - MPMX19_05088 0.89 -0.4 578,234 - MPMX19_05088 0.89 +0.5 578,234 - MPMX19_05088 0.89 +0.2 578,234 - MPMX19_05088 0.89 -0.4 578,342 + +0.6 578,342 + -1.0 578,512 + MPMX19_05089 0.12 -2.2 578,897 + MPMX19_05089 0.45 -1.1 578,897 + MPMX19_05089 0.45 -0.6 579,038 + MPMX19_05089 0.57 +0.1 579,052 + MPMX19_05089 0.58 -1.2 579,052 + MPMX19_05089 0.58 -1.2 579,052 + MPMX19_05089 0.58 -0.7 579,052 + MPMX19_05089 0.58 -1.8 579,052 + MPMX19_05089 0.58 -0.9 579,053 - MPMX19_05089 0.58 +0.6 579,053 - MPMX19_05089 0.58 -1.5 579,053 - MPMX19_05089 0.58 -0.5 579,053 - MPMX19_05089 0.58 +0.4 579,130 + MPMX19_05089 0.65 -0.4 579,130 + MPMX19_05089 0.65 -0.6 579,131 - MPMX19_05089 0.65 -0.7 579,666 + -1.2 579,666 + -1.3 579,666 + -0.2 579,666 + -1.5 579,666 + -1.7 579,666 + -1.4 579,667 - -0.1 579,667 - -1.8 579,667 - +0.1 579,667 - -0.6 579,667 - -0.9 579,667 - -0.5 579,667 - -0.4 579,667 - +0.4 579,667 - -0.5 579,667 - -1.5 579,667 - -2.1 579,667 - -0.6 579,667 - -0.2 579,667 - -0.8 579,765 + MPMX19_05090 0.15 -0.7 579,766 - MPMX19_05090 0.15 -1.2 579,766 - MPMX19_05090 0.15 -1.4 579,871 + MPMX19_05090 0.22 +0.5 579,871 + MPMX19_05090 0.22 +0.9 579,871 + MPMX19_05090 0.22 +0.2 579,872 - MPMX19_05090 0.22 +1.3 579,872 - MPMX19_05090 0.22 -1.2 579,925 - MPMX19_05090 0.26 -0.8 579,987 + MPMX19_05090 0.30 -0.5 579,987 + MPMX19_05090 0.30 +0.6 579,987 + MPMX19_05090 0.30 +0.6 579,987 + MPMX19_05090 0.30 -1.4 579,988 - MPMX19_05090 0.30 +1.6 580,167 + MPMX19_05090 0.42 -0.5 580,167 + MPMX19_05090 0.42 -0.4 580,167 + MPMX19_05090 0.42 +0.6 580,167 + MPMX19_05090 0.42 -0.9 580,168 - MPMX19_05090 0.42 +0.3 580,168 - MPMX19_05090 0.42 +1.4 580,168 - MPMX19_05090 0.42 -0.7 580,168 - MPMX19_05090 0.42 -1.1 580,168 - MPMX19_05090 0.42 -0.1 580,170 + MPMX19_05090 0.42 -0.3 580,170 + MPMX19_05090 0.42 +0.4 580,171 - MPMX19_05090 0.42 +1.0 580,171 - MPMX19_05090 0.42 -2.1 580,171 - MPMX19_05090 0.42 -0.6 580,322 + MPMX19_05090 0.52 +0.5 580,437 + MPMX19_05090 0.60 -0.7 580,438 - MPMX19_05090 0.60 -1.4 580,438 - MPMX19_05090 0.60 -0.7 580,438 - MPMX19_05090 0.60 -1.3 580,438 - MPMX19_05090 0.60 -0.7
Or see this region's nucleotide sequence