Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04573

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04571 and MPMX19_04572 are separated by 118 nucleotidesMPMX19_04572 and MPMX19_04573 are separated by 12 nucleotidesMPMX19_04573 and MPMX19_04574 are separated by 23 nucleotides MPMX19_04571: MPMX19_04571 - hypothetical protein, at 949,753 to 950,238 _04571 MPMX19_04572: MPMX19_04572 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 950,357 to 951,010 _04572 MPMX19_04573: MPMX19_04573 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 951,023 to 951,814 _04573 MPMX19_04574: MPMX19_04574 - hypothetical protein, at 951,838 to 953,844 _04574 Position (kb) 951 952Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 950.456 kb on + strand, within MPMX19_04572at 950.456 kb on + strand, within MPMX19_04572at 950.456 kb on + strand, within MPMX19_04572at 950.456 kb on + strand, within MPMX19_04572at 950.457 kb on - strand, within MPMX19_04572at 950.457 kb on - strand, within MPMX19_04572at 950.457 kb on - strand, within MPMX19_04572at 950.457 kb on - strand, within MPMX19_04572at 950.514 kb on + strand, within MPMX19_04572at 950.515 kb on - strand, within MPMX19_04572at 950.582 kb on + strand, within MPMX19_04572at 950.582 kb on + strand, within MPMX19_04572at 950.583 kb on - strand, within MPMX19_04572at 950.583 kb on - strand, within MPMX19_04572at 950.583 kb on - strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.591 kb on + strand, within MPMX19_04572at 950.592 kb on - strand, within MPMX19_04572at 950.592 kb on - strand, within MPMX19_04572at 950.592 kb on - strand, within MPMX19_04572at 950.592 kb on - strand, within MPMX19_04572at 950.592 kb on - strand, within MPMX19_04572at 950.634 kb on + strand, within MPMX19_04572at 950.634 kb on + strand, within MPMX19_04572at 950.634 kb on + strand, within MPMX19_04572at 950.634 kb on + strand, within MPMX19_04572at 950.635 kb on - strand, within MPMX19_04572at 950.635 kb on - strand, within MPMX19_04572at 950.708 kb on + strand, within MPMX19_04572at 950.708 kb on + strand, within MPMX19_04572at 950.708 kb on + strand, within MPMX19_04572at 950.709 kb on - strand, within MPMX19_04572at 950.709 kb on - strand, within MPMX19_04572at 950.732 kb on + strand, within MPMX19_04572at 950.732 kb on + strand, within MPMX19_04572at 950.732 kb on + strand, within MPMX19_04572at 950.733 kb on - strand, within MPMX19_04572at 950.733 kb on - strand, within MPMX19_04572at 950.733 kb on - strand, within MPMX19_04572at 950.825 kb on + strand, within MPMX19_04572at 950.825 kb on + strand, within MPMX19_04572at 950.826 kb on - strand, within MPMX19_04572at 950.826 kb on - strand, within MPMX19_04572at 950.826 kb on - strand, within MPMX19_04572at 950.826 kb on - strand, within MPMX19_04572at 950.826 kb on - strand, within MPMX19_04572at 951.287 kb on + strand, within MPMX19_04573at 951.287 kb on + strand, within MPMX19_04573at 951.287 kb on + strand, within MPMX19_04573at 951.287 kb on + strand, within MPMX19_04573at 951.288 kb on - strand, within MPMX19_04573at 951.288 kb on - strand, within MPMX19_04573at 951.288 kb on - strand, within MPMX19_04573at 951.288 kb on - strand, within MPMX19_04573at 951.288 kb on - strand, within MPMX19_04573at 951.329 kb on + strand, within MPMX19_04573at 951.329 kb on + strand, within MPMX19_04573at 951.329 kb on + strand, within MPMX19_04573at 951.330 kb on - strand, within MPMX19_04573at 951.330 kb on - strand, within MPMX19_04573at 951.333 kb on - strand, within MPMX19_04573at 951.333 kb on - strand, within MPMX19_04573at 951.333 kb on - strand, within MPMX19_04573at 951.333 kb on - strand, within MPMX19_04573at 951.431 kb on + strand, within MPMX19_04573at 951.431 kb on + strand, within MPMX19_04573at 951.431 kb on + strand, within MPMX19_04573at 951.431 kb on + strand, within MPMX19_04573at 951.432 kb on - strand, within MPMX19_04573at 951.432 kb on - strand, within MPMX19_04573at 951.432 kb on - strand, within MPMX19_04573at 951.432 kb on - strand, within MPMX19_04573at 951.432 kb on - strand, within MPMX19_04573at 951.489 kb on - strand, within MPMX19_04573at 951.489 kb on - strand, within MPMX19_04573at 951.489 kb on - strand, within MPMX19_04573at 951.560 kb on + strand, within MPMX19_04573at 951.560 kb on + strand, within MPMX19_04573at 951.560 kb on + strand, within MPMX19_04573at 951.560 kb on + strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.561 kb on - strand, within MPMX19_04573at 951.588 kb on - strand, within MPMX19_04573at 951.647 kb on + strand, within MPMX19_04573at 951.647 kb on + strand, within MPMX19_04573at 951.648 kb on - strand, within MPMX19_04573at 951.761 kb on + strandat 951.761 kb on + strandat 951.761 kb on + strandat 951.761 kb on + strandat 951.762 kb on - strandat 951.762 kb on - strandat 951.762 kb on - strandat 951.762 kb on - strandat 951.762 kb on - strandat 951.762 kb on - strandat 951.762 kb on - strandat 952.294 kb on + strand, within MPMX19_04574at 952.294 kb on + strand, within MPMX19_04574at 952.294 kb on + strand, within MPMX19_04574at 952.295 kb on - strand, within MPMX19_04574at 952.295 kb on - strand, within MPMX19_04574at 952.295 kb on - strand, within MPMX19_04574at 952.295 kb on - strand, within MPMX19_04574at 952.295 kb on - strand, within MPMX19_04574at 952.327 kb on + strand, within MPMX19_04574at 952.327 kb on + strand, within MPMX19_04574at 952.327 kb on + strand, within MPMX19_04574at 952.327 kb on + strand, within MPMX19_04574at 952.327 kb on + strand, within MPMX19_04574at 952.328 kb on - strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.330 kb on + strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.331 kb on - strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.333 kb on + strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.334 kb on - strand, within MPMX19_04574at 952.738 kb on + strand, within MPMX19_04574at 952.738 kb on + strand, within MPMX19_04574at 952.739 kb on - strand, within MPMX19_04574at 952.739 kb on - strand, within MPMX19_04574

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
remove
950,456 + MPMX19_04572 0.15 -0.7
950,456 + MPMX19_04572 0.15 -3.1
950,456 + MPMX19_04572 0.15 -1.5
950,456 + MPMX19_04572 0.15 -0.2
950,457 - MPMX19_04572 0.15 -1.1
950,457 - MPMX19_04572 0.15 -0.6
950,457 - MPMX19_04572 0.15 +0.6
950,457 - MPMX19_04572 0.15 -0.2
950,514 + MPMX19_04572 0.24 -0.2
950,515 - MPMX19_04572 0.24 -0.4
950,582 + MPMX19_04572 0.34 +0.8
950,582 + MPMX19_04572 0.34 -0.2
950,583 - MPMX19_04572 0.35 +1.8
950,583 - MPMX19_04572 0.35 +0.2
950,583 - MPMX19_04572 0.35 +1.8
950,591 + MPMX19_04572 0.36 -0.5
950,591 + MPMX19_04572 0.36 +0.4
950,591 + MPMX19_04572 0.36 -0.1
950,591 + MPMX19_04572 0.36 -0.2
950,591 + MPMX19_04572 0.36 -0.6
950,591 + MPMX19_04572 0.36 -1.0
950,592 - MPMX19_04572 0.36 -1.6
950,592 - MPMX19_04572 0.36 -0.4
950,592 - MPMX19_04572 0.36 -0.7
950,592 - MPMX19_04572 0.36 -0.7
950,592 - MPMX19_04572 0.36 +0.4
950,634 + MPMX19_04572 0.42 +1.8
950,634 + MPMX19_04572 0.42 +0.0
950,634 + MPMX19_04572 0.42 -0.9
950,634 + MPMX19_04572 0.42 -0.2
950,635 - MPMX19_04572 0.43 +0.6
950,635 - MPMX19_04572 0.43 -0.7
950,708 + MPMX19_04572 0.54 +1.3
950,708 + MPMX19_04572 0.54 -0.6
950,708 + MPMX19_04572 0.54 -0.7
950,709 - MPMX19_04572 0.54 +0.4
950,709 - MPMX19_04572 0.54 -0.0
950,732 + MPMX19_04572 0.57 -0.2
950,732 + MPMX19_04572 0.57 -1.0
950,732 + MPMX19_04572 0.57 -1.2
950,733 - MPMX19_04572 0.57 +0.5
950,733 - MPMX19_04572 0.57 -1.4
950,733 - MPMX19_04572 0.57 +0.8
950,825 + MPMX19_04572 0.72 -0.9
950,825 + MPMX19_04572 0.72 -0.2
950,826 - MPMX19_04572 0.72 -0.7
950,826 - MPMX19_04572 0.72 -0.8
950,826 - MPMX19_04572 0.72 -0.6
950,826 - MPMX19_04572 0.72 -1.2
950,826 - MPMX19_04572 0.72 +0.3
951,287 + MPMX19_04573 0.33 -1.2
951,287 + MPMX19_04573 0.33 +1.5
951,287 + MPMX19_04573 0.33 -0.1
951,287 + MPMX19_04573 0.33 -0.3
951,288 - MPMX19_04573 0.33 -2.3
951,288 - MPMX19_04573 0.33 -0.8
951,288 - MPMX19_04573 0.33 +0.2
951,288 - MPMX19_04573 0.33 -0.0
951,288 - MPMX19_04573 0.33 -2.9
951,329 + MPMX19_04573 0.39 -1.2
951,329 + MPMX19_04573 0.39 -1.2
951,329 + MPMX19_04573 0.39 -0.2
951,330 - MPMX19_04573 0.39 -1.2
951,330 - MPMX19_04573 0.39 -1.0
951,333 - MPMX19_04573 0.39 +0.0
951,333 - MPMX19_04573 0.39 +0.4
951,333 - MPMX19_04573 0.39 +0.0
951,333 - MPMX19_04573 0.39 -2.0
951,431 + MPMX19_04573 0.52 -1.0
951,431 + MPMX19_04573 0.52 -0.9
951,431 + MPMX19_04573 0.52 -1.0
951,431 + MPMX19_04573 0.52 +0.6
951,432 - MPMX19_04573 0.52 -0.2
951,432 - MPMX19_04573 0.52 -0.8
951,432 - MPMX19_04573 0.52 -0.3
951,432 - MPMX19_04573 0.52 +0.8
951,432 - MPMX19_04573 0.52 +1.3
951,489 - MPMX19_04573 0.59 +0.2
951,489 - MPMX19_04573 0.59 -0.1
951,489 - MPMX19_04573 0.59 -0.7
951,560 + MPMX19_04573 0.68 +0.8
951,560 + MPMX19_04573 0.68 +0.1
951,560 + MPMX19_04573 0.68 -0.9
951,560 + MPMX19_04573 0.68 +0.2
951,561 - MPMX19_04573 0.68 -0.3
951,561 - MPMX19_04573 0.68 -1.6
951,561 - MPMX19_04573 0.68 -0.7
951,561 - MPMX19_04573 0.68 +1.8
951,561 - MPMX19_04573 0.68 -0.2
951,561 - MPMX19_04573 0.68 -0.5
951,561 - MPMX19_04573 0.68 -0.7
951,588 - MPMX19_04573 0.71 -1.8
951,647 + MPMX19_04573 0.79 -0.0
951,647 + MPMX19_04573 0.79 -1.6
951,648 - MPMX19_04573 0.79 +0.4
951,761 + +0.0
951,761 + -2.0
951,761 + -1.6
951,761 + -0.7
951,762 - +0.0
951,762 - -0.4
951,762 - -0.3
951,762 - +1.4
951,762 - -1.2
951,762 - +0.2
951,762 - -1.6
952,294 + MPMX19_04574 0.23 -0.4
952,294 + MPMX19_04574 0.23 -1.5
952,294 + MPMX19_04574 0.23 +0.4
952,295 - MPMX19_04574 0.23 -0.2
952,295 - MPMX19_04574 0.23 +0.5
952,295 - MPMX19_04574 0.23 -0.6
952,295 - MPMX19_04574 0.23 +0.8
952,295 - MPMX19_04574 0.23 -0.4
952,327 + MPMX19_04574 0.24 +0.5
952,327 + MPMX19_04574 0.24 -0.8
952,327 + MPMX19_04574 0.24 +0.5
952,327 + MPMX19_04574 0.24 -1.2
952,327 + MPMX19_04574 0.24 -2.1
952,328 - MPMX19_04574 0.24 -0.3
952,330 + MPMX19_04574 0.25 -1.1
952,330 + MPMX19_04574 0.25 -0.2
952,330 + MPMX19_04574 0.25 -1.6
952,330 + MPMX19_04574 0.25 -0.2
952,330 + MPMX19_04574 0.25 -1.6
952,330 + MPMX19_04574 0.25 +0.4
952,330 + MPMX19_04574 0.25 -0.3
952,330 + MPMX19_04574 0.25 -1.0
952,330 + MPMX19_04574 0.25 -0.4
952,330 + MPMX19_04574 0.25 -1.8
952,330 + MPMX19_04574 0.25 -0.8
952,330 + MPMX19_04574 0.25 +0.2
952,331 - MPMX19_04574 0.25 -1.0
952,331 - MPMX19_04574 0.25 +0.2
952,331 - MPMX19_04574 0.25 -0.4
952,331 - MPMX19_04574 0.25 -1.0
952,331 - MPMX19_04574 0.25 -0.3
952,331 - MPMX19_04574 0.25 +1.0
952,331 - MPMX19_04574 0.25 -0.7
952,331 - MPMX19_04574 0.25 -0.1
952,331 - MPMX19_04574 0.25 -0.9
952,331 - MPMX19_04574 0.25 -0.7
952,331 - MPMX19_04574 0.25 -1.0
952,331 - MPMX19_04574 0.25 -0.1
952,333 + MPMX19_04574 0.25 -0.9
952,333 + MPMX19_04574 0.25 -0.6
952,333 + MPMX19_04574 0.25 +0.6
952,333 + MPMX19_04574 0.25 -0.0
952,333 + MPMX19_04574 0.25 -0.4
952,333 + MPMX19_04574 0.25 -2.5
952,333 + MPMX19_04574 0.25 -0.5
952,333 + MPMX19_04574 0.25 -0.8
952,333 + MPMX19_04574 0.25 -0.2
952,333 + MPMX19_04574 0.25 +0.8
952,333 + MPMX19_04574 0.25 -0.6
952,334 - MPMX19_04574 0.25 +0.4
952,334 - MPMX19_04574 0.25 +0.7
952,334 - MPMX19_04574 0.25 -1.6
952,334 - MPMX19_04574 0.25 +1.2
952,334 - MPMX19_04574 0.25 +1.0
952,334 - MPMX19_04574 0.25 +1.8
952,334 - MPMX19_04574 0.25 -1.2
952,334 - MPMX19_04574 0.25 -1.0
952,334 - MPMX19_04574 0.25 -0.3
952,334 - MPMX19_04574 0.25 +0.0
952,334 - MPMX19_04574 0.25 -0.2
952,738 + MPMX19_04574 0.45 -0.2
952,738 + MPMX19_04574 0.45 +1.3
952,739 - MPMX19_04574 0.45 -0.8
952,739 - MPMX19_04574 0.45 -0.6

Or see this region's nucleotide sequence